Array 1 284436-287250 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKK01000002.1 Moraxella catarrhalis strain 129/464/4 NODE_2_length_348652_cov_30.663645, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 284436 28 100.0 32 ............................ ATGATAGATCGAGCGATAGCAAAACCTTTCTC 284496 28 100.0 32 ............................ TGGTTGCTATTATAGGGTATCTTACATTAAAA 284556 28 100.0 32 ............................ TACTGTTTGCAGTTTAACGACTTTGCAGGGGC 284616 28 100.0 32 ............................ CAAAAAAAGAAGTTTCGGTGATTAAGGCCCAT 284676 28 100.0 32 ............................ TGTCAAGTTTTGGCGGTTTTGGCTGATTTCAA 284736 28 100.0 32 ............................ GCTGGCGGACGGTGTTGATGTCTTCACGACCG 284796 28 100.0 32 ............................ GGACCATTTCCAGCCAACCTTGGCATGATGGC 284856 28 100.0 32 ............................ ATCTACAAGACCATATATTTCACCCTCTGATA 284916 28 100.0 32 ............................ GCCATCACGAATGGACGATGAATAGCAGTGAT 284976 28 100.0 32 ............................ ATCAGGAAAGTTCGGCTCGCCATTGTCGTTAA 285036 28 100.0 32 ............................ ATTAAACAGCGACTTTCAAAAACCCACAGTAG 285096 28 100.0 32 ............................ TTAGCGTACAGGGGGTATTATTTGGCATGAAT 285156 28 100.0 32 ............................ GGGGTCAAGATTGGGCGTTGGCATTAGCAGAC 285216 28 100.0 32 ............................ TGTTCATCAAGAAAGGTTTTGATGGGCAAGAT 285276 28 100.0 32 ............................ ATCTGATGCTTGCCTAATTGCCGATAAACTCG 285336 28 100.0 33 ............................ TTCAAAATGAGCGCCCAAAATTATTACAAGATT 285397 28 100.0 31 ............................ ATCCTGCCACCACTGTATCCAGCCCATTGTC 285456 28 100.0 32 ............................ TTGCACCAACACCGCTCATGACAATGAGCAAT 285516 28 100.0 32 ............................ AATATAAGTTATCATCAACTGTGTGTAGCTTT 285576 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 285636 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 285696 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 285756 28 96.4 32 ..........A................. TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 285816 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 285876 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 285936 23 82.1 0 .......................----- - Deletion [285954] 285959 28 100.0 32 ............................ GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 286019 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 286079 28 100.0 33 ............................ TTCAAAATGAGCGCCCAAAATTATTACAAGATT 286140 28 100.0 32 ............................ AGCCACAACACCAAGTGCACCCCAAAGATCAT 286200 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 286261 28 100.0 32 ............................ TTGTAGCTCAAAATTGGCTTTGGCGATGTCCA 286321 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 286381 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 286441 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 286502 28 100.0 32 ............................ TTGTAGCTCAAAATTGGCTTTGGCGATGTCCA 286562 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 286622 28 100.0 32 ............................ TCATTATTATCGCCAAAACTCACCCAGTCAAA 286682 28 100.0 34 ............................ TCTCAAACCCTGCCCCGTTTAGCGTATCAATAAT 286744 28 100.0 31 ............................ AAAGGTTTGCATCCCCTTTTGATGGTTTATA 286803 28 100.0 32 ............................ AGTTATCGGGCTTGTATTCGCCATTTTCTTTA 286863 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATAACCTT 286923 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 286983 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 287043 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 287103 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 287163 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 287223 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================== ================== 48 28 99.4 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGACGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //