Array 1 292619-292050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEZ010000006.1 Pectobacterium brasiliense strain IPO:4073 NAK:248 FHJNKMAD_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 292618 28 96.4 32 ...........C................ TAGCGCTGAGGAAATTAGTTTCCCCGCCACTG 292558 28 96.4 32 ...........C................ ATCTATTTTGACGCGATATGTTGAGCTGGTTT 292498 28 96.4 32 ...........C................ TGGTGAACATCCCGAACGGGGACAAGGAAGGC 292438 28 96.4 32 ...........C................ AAACCAAAAACCAGCTCAACATATCGCGTCAA 292378 28 100.0 32 ............................ ATATTACAGCCCCAGCCACAACAGCCAGGCGT 292318 28 100.0 32 ............................ GAAAAGACAGGGAATGTCTCAGATTCGCGTTT 292258 28 100.0 32 ............................ ATCACCAAAGCACTTACCGGAGGTAATCATGA 292198 28 100.0 33 ............................ GATCGCAATGCTGCTGAATGGGTAATCCATCAA 292137 28 100.0 32 ............................ TGAGAGCCGCCGATAATCATCGCTGACTGGAG 292077 28 85.7 0 .............C.........G.T.C | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCCACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAAGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTGTAGAACATGGTCCGCTACAGGATGCTCCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTTCCCTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTCCGACAAAAAAGTCGCATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : TATCGAAATGCGTCACTGGTGCGACGCATTTTTGAGGACTACTCCCCGTTGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCATTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCCGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACATTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 300972-301600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEZ010000006.1 Pectobacterium brasiliense strain IPO:4073 NAK:248 FHJNKMAD_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 300972 28 100.0 33 ............................ GATCAATTGGTCGTCTATGTACAGAAGGGTAAT 301033 28 100.0 32 ............................ TTCATAGCCCGTATGTAGGAAACGCAACGTTG 301093 28 100.0 32 ............................ CAATGTCACAAGCGCGTAAAAACGCCATTCTT 301153 28 100.0 32 ............................ AGTCTCGAATATTATCAATGTACACCGCCACA 301213 28 100.0 32 ............................ CAGAATTTCTCCAGCGCGTGGCCGGAGTACCA 301273 28 100.0 32 ............................ ATGAAGCGTATGTCACAGACATGATGTCACCA 301333 28 100.0 32 ............................ TCAATTTTCATCGAGCATTTTCAAACGGGTCG 301393 28 92.9 32 ...........T.C.............. ATGAACGTATCGAGAATGTCGTCGTTTTTGTG 301453 28 96.4 32 ...........T................ GAGTGGGACGATTGCGCGCCTACGGAAATGCC 301513 28 100.0 32 ............................ TGGGTGCGGTTAGAGGACAAAGAACGCGCGCT 301573 28 75.0 0 .........T.T.C..........TCCC | ========== ====== ====== ====== ============================ ================================= ================== 11 28 96.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGACTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : CCGGTTTTAAGTGCCATTATCTGGCTATTATCGAGGTAACGCTATCGGCAGAGTTTGATGTGTTATCGTCTTTAAACAACGTATTTTTGATTCCCTTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTATGGGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGGGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCCGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGAACATCTTGATTTTAAAAAACAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAATATTCATGCCATATTAACTACGCAGGAAGCGACGTATTTTTTGCAGACGTTATGCACGCCTAACCCTAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGATCCTG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 308272-307944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEZ010000006.1 Pectobacterium brasiliense strain IPO:4073 NAK:248 FHJNKMAD_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 308271 28 100.0 32 ............................ AGAAGCCCGCGAGGGGGATTATCTGGTTGGCA 308211 28 100.0 32 ............................ AGTCACGGAACCGTATTATCACGACTATCGGA 308151 28 100.0 32 ............................ TGAAATTTACAGCGCTGTTATAAAAATGGGGG 308091 28 100.0 32 ............................ ACGCTTCCTCCAGACGTAAAAAACCCGCTCAG 308031 28 100.0 32 ............................ ACACCTGAGCGATCGTTAAATCTTTTATTCTT 307971 28 82.1 0 ..C........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGAAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAGGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATAAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTCAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATATCTGACATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTATGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCATCTCTGATAAAAAAGGGTTCTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAAC # Right flank : ATAAAACGCAGCAAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTTGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGAGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //