Array 1 11672-11457 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIJE01000002.1 Cronobacter sakazakii strain C7 NODE_2_length_552459_cov_117.463, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================ ================== 11671 34 97.1 28 ......................A........... CGGCCCACGGAACAGGCGTTAATGGGGA 11609 34 97.1 26 ..................C............... TGGCCCACGGAGCGGAAGTTGACTGA 11549 34 100.0 25 .................................. TGGCCACGGGACAGGCGTTGATGTC 11490 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================ ================== 4 34 98.5 27 ATGTAGGGTGGGTAAGCGAAGCGCACCCACCACA # Left flank : AGCTGATGCTCTACCCTGCCGTACAGGCGACGCGCGAGGCCGTTGAAGCGATTGCCGAAGCGGATTTAATCGTGATTGGCCCCGGCAGTTTTTATACCAGCCTGATGCCGCTGCTGCTGCTTGACGATCTCGCCAAAGCGCTGCGCCGCACGCCTGCGCCGATGGTTTACATCGGCAATTTAGGCCGCGAGTTAAGCCCGGCCGCTGCTGCGCTCAGGCTTGAAGAGAAGCTGGCGCTGATGGAAGCGCATATCGGTAAACGCGTGGTGGATGCCGTGGTCGTTGGCCCGAAGGTGGACGTGAGCGGCGCGCAGGACAGAATCGTGATTCAGGAGCCGCTGGAAGCGAGTGATATCCCTTACCGCCACGACCGCCATCTGTTGCGCGCAGCGCTGGAAAAGGCGATTCAGGCGCTGGGGTAAGCGCTATGGGTGCAATGGGGTTACGGCGGGTGCGCTTCGCTTACCCGCCCTACGGCTCCCGCAATGGGCTTTGATGAT # Right flank : CCACAACCCCCGTCACAACCAGAAGAACTTACGAGGCAGCGATAAACAGCTCGCGCAACTGATGAAGCTTATCGCGCAACTGCGCCGCCTCTTCAAACTCCAGGTTCTGCGCGTGTTGCACCATCTGCGCCTCAAGCTGATGAATTTTCTGCTGCAACGCTTTCGGCGTCAGCGCCAGTTCAGCGGCTTCGGCATCTGCCACGGTGCGCCCTTTTCCGCGTCCTTTCGGCTTGGTTTTCGCAATATTCTCGCCAAGCGCCAGAATATCGACCACTTTCTTATTAAGCCCCTGCGGCACAATGCCGTGCTCTTCGTTATAAGCCTGCTGTTTCTCACGACGGCGTTCGGTTTCGCCAATCGCCTTCGCCATCGACGGCGTGATTTTATCGCCGTAGAGAATCGCTTTGCCGTTCACGTTACGCGCCGCGCGGCCAATCGTCTGGATAAGCGAACGTTCGGAGCGCAGGAAGCCCTCTTTGTCGGCGTCGAGAATAGCCACC # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.24, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGGGTGGGTAAGCGAAGCGCACCCACCACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 182283-183227 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIJE01000003.1 Cronobacter sakazakii strain C7 NODE_3_length_488169_cov_125.597, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182283 29 96.6 32 ............................A CACCCAGCAAATCATGGATTTCTACGACACGC 182344 29 100.0 32 ............................. CCTTTTTCTTCTTTCTGCTTTTTTGCCTTTCT 182405 29 100.0 32 ............................. CAGGAGCTGAACGATATGCAGGAGCTGACGGA 182466 29 100.0 32 ............................. CGCTGGCGCAGGCCCGCGCGCAGAACGCACAG 182527 29 100.0 32 ............................. GGTAAAACTATCTCTGCCCCGTACTGGCAACC 182588 29 100.0 32 ............................. CGGCGGTTGCTGATTATCAATCCAGCGTTATC 182649 29 100.0 32 ............................. GTTGATTATCCGGCCGCAGTATTCAACCGGGC 182710 29 100.0 32 ............................. CGGCCGAGCTGGGAGGAACGGCCCGCCTGTTT 182771 29 96.6 32 .T........................... TCCACGCAAACAGCCGGGGCCGGCGTCTGGTT 182832 29 96.6 32 .T........................... AGCAAACCACTCGGCAGCTACTCGGCGGGCAA 182893 29 96.6 32 .T........................... GCCTTCGAACGGCCCCTTGGCGCGCTACCGGC 182954 29 96.6 32 .T........................... TGGGTCGCAGTAGAGCAAGACGCCAGCGGGGA 183015 29 100.0 32 ............................. AAGCAGACAAACTGGAAAGTTGTTATCTGGAA 183076 29 96.6 32 ............T................ ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 183137 29 96.6 32 ...................A......... TACTTTGAGAAAACCGCGCAATCTGTGCTGGT 183198 29 82.8 0 .............C...A..A....T..T | C [183223] ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.4 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACCGTTAGT # Right flank : TCCCGCGTTCTTCGCGCCTGTCAATCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCATCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 209331-209786 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIJE01000003.1 Cronobacter sakazakii strain C7 NODE_3_length_488169_cov_125.597, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 209331 29 100.0 32 ............................. TGCCCGCGCAACGTCTGGCGGGAAAAAACATT 209392 29 100.0 32 ............................. GTAATGTTGACCTGTTTTGGGAGAGTGGAGAG 209453 29 96.6 32 ............................T GAGGCGCAGCTGGTCAACGCTGTTGTCTCGTC 209514 29 100.0 32 ............................. TTACCAGCCGGGCGGGCGCAATTCCCGGATCG 209575 29 96.6 32 ............................A CCCTCAAAGCGCCGTTTTAACTCTCTGGTGTC 209636 29 100.0 32 ............................. TTCATACGCCGCACCAAAACTACTACCAACAG 209697 29 100.0 32 ............................. TGCGCAGGGTTCAAATTGGGGGGGATAACTGA 209758 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAATGTCCCGCCCCGCCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCGCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GTTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATAAATTGCCAGGTCCGATGGGTGCGCTTCGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGCCCCACAAAACTTTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //