Array 1 49829-50117 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXI01000014.1 Thermodesulfobacterium thermophilum DSM 1276 H529DRAFT_scaffold00014.14_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 49829 29 100.0 36 ............................. TATCCGATATGGAGAAACGAGGACTGTATGTACAAA 49894 29 100.0 36 ............................. TATTGTAAATTTACGAATAAAAGCTTTATAATTGTC 49959 29 100.0 36 ............................. CTTCAATTTCTTAAAAGAAAAGAATGTAGTGTTTTA 50024 29 100.0 36 ............................. TACCTTTCCATGTACTACAGAAATTTATCTTCTTTT 50089 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 100.0 36 CTTTATATCCCACATGGTTCAGATGAAAC # Left flank : TATGTTAATAGAAGTCGTATTACAAAAAGGGGCAGATCCTTCTGACTTATTTGATGATCCTCAAAAGTATCCTTTTGACCACTGGTGGTGGCATTTAGATAAAATTGGAGAGAAAACTTATCCTGTTCAACTTCTACCGGAATATTTGAGAAATATTTATTTAAAAAATAAATAAAAATATTAAGGGAGATATTTAAGTTTTTCTTTAAGAAGCCTTCTTAAATATCTCCTTTTTTTCTTTTTTATAAGATAAGGAATCAAATAGGCTTCTACTAAATTTTTTAAAAACACAACAACTAAAAAAACAACTAAAAATGTAATAAAAAATAAAACCATCAAAGGACCGATGAGAAGACCTATGATAGACTTTAAAGACAAACTCAACATAGCAGGCATACGAATGTATTCCAAAGTTAAAAGAATACATTAACTAAAGTATACTACTAATTTCTAAAGAAACAAAATATATTTCTAACATTGCCAATTGATTTGGGAGTTCC # Right flank : AATCCTATAAAGATGCTTTTTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATATCCCACATGGTTCAGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 41101-41392 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXI01000015.1 Thermodesulfobacterium thermophilum DSM 1276 H529DRAFT_scaffold00015.15_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 41101 29 100.0 36 ............................. TTAAAAAGAAAGTATCTTCAAGTGTTGACCTACTTG 41166 29 100.0 36 ............................. CTCTTCTTCATTTTTAGCAAAATATTGATAAAGCAA 41231 29 100.0 38 ............................. TCTGCTGATGCGGTAATAACATTACTAATCGCCTTTCA 41298 29 100.0 37 ............................. AATCATGCAAGGCCACAAAAGCATTTAATCTTGTTGT 41364 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 100.0 37 GTTTCATCTGAACCATGTGGGATATAAAG # Left flank : AACCTTTTAAGGCTTGGTGGTGATATATGCCGTATTTGATTGTTACCTATGATATAGGAGAAGAAAGGCTAAATAAAGTGAGAAAAATTCTTAAAAAATACTTTATGTGGGTTCAGAATTCGGTTTTTGAGGGAGAGATTAGTGAGGGAAAGTTATTAAAGTGCAAGTTAGAGCTGGAAAAGGTAATCGATAAAGAAAATGATTCTATATATTTTTACAGTCTTGAGAACAGGTTGAACTACAGAAAAACAGTCCTCGGAATTGAAAAGGATATGACAGGGAATATTTTATGATTTTGCATCGAACCTGGTTTTCTGCCAAAATTTGAATAAACTTAATGAATGCTACATAATGAAGATATTTTTTATTAGCTTTTTTAAAATCGATTGAAGGTTTGATGCAGATAAAATCAAATCTAGGTTGTAGATAAAATTATAGATTGTTTTAAAATTTTTATGTATAAAGCTTTTGCATGTAATTTTATGTTCTTTGACAATTGG # Right flank : ACTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCATGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 69692-69939 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXI01000004.1 Thermodesulfobacterium thermophilum DSM 1276 H529DRAFT_scaffold00004.4_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 69692 35 100.0 37 ................................... CTTACATTCCTTATTCAACACATACTGAGTGTATTTC 69764 35 100.0 35 ................................... ACTATATCCCCGTTCTCTAATTGGATAAAATATTT 69834 35 100.0 36 ................................... CAATTACCTCAACCCTCTCCATCAGCCTCTATTTTT 69905 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 4 35 100.0 36 GTAGAAACCTGCCCTACTTAAAAAGGGATTGCGAC # Left flank : TTTATTTAACCACGCGGGCTCATCACAACCATTACAAATTAGACTCTAAACCCCTCCCTACTTTTCAAAATTATATTTTTAAACTATTTATCTTGTAAAAATTTTGTTTTATATTATAATTTTTAATATATCTTAGGTCTTTGACAAGAGAATAGGCTACAGGGCAGGGGCAATCTTGAGCTTTAAGGGGCTAGCATAACTTTTTCAAGGGTGTGTGTAAGTATATTTGGTAAACAAATAAACATTTTTTGCCCTTCCCTACAAATAAGATTTTATGCGACATAAAGAAGGGTGTTTTTAGAAGTATTTTATTGAGTCTCATTTGCAATTAAAGTAGCTAAAAAGTATCTTTATAAGTTATTGATTTTATGTAAAAATTTTTTGTTATCCCTGACTCTCAAACATAGATTTTATCAGCATTTCAAAGGGCTATTTTTTAAAATTTAGTTTTATACTAAACTTTAAAAAGTTAGATTTTATCAGGGTTCCACGGGGTAAGA # Right flank : CGCGTTTGAATAAAAACGGAAAGTATAGTTTGTTTGCTTCTACTGAATGTAGAAATCTTCCTTATTTAAAAATAATCTGGTGATTGGTAAGTGGTCTGAGTTGCTTAAAATATCTGCAATTATAAACGAACAGGGGAAAACCTCTAAATTCGGTGGCTATTCCATTTTTAGTGAGAAGAAAAATAAAGAATAGCTTTAATCTTACTCCATTAACGCAATTGTTTGATAGAGCGTACTCATAAAATTAATTTGTAAGGCTATACTAAAGTTTTGCTTAGGTTAAAAAGTTTAGTTTTACAGGTAGTTTTTATTAGCTCAGCCTCAGGTAAAAAAGACCAGATTTTGTGAGTTATCAAAGAGATAGCAAGGTGGACTCCATCTGTTGGGTCAGGATGGTCTGAACTATGAACAGAAATAAGAATCCCTCTGGTTTCATAAGGATTTACAGCTACAAAAAACCGTTGTTGCAGACTCTTTTCTAACACTATGAGGTCTATAAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAACCTGCCCTACTTAAAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1518-1354 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXI01000030.1 Thermodesulfobacterium thermophilum DSM 1276 H529DRAFT_scaffold00030.30_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1517 30 100.0 36 .............................. TTAATTGTTCTATAATACATTAAATAAAATGCTGTA 1451 30 100.0 38 .............................. GCAGATAGGCAGTTGGTTGAAGGACAAGGTGGATGTGT 1383 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 38 AACTGCAAGCCTACCTTTGAGGAATTGAAA # Left flank : TTTTTCCGAGGACAAGATAACCCATTTTTATTTAGCAGTAAGTAACTATTTTCAAGTCCCTAAGGAAAAAATTGTTATTCTAAAAAGAGGTTCTCTCATTAAGGAAGAAGAACTTCCTTTAGTTTTATATTTAAGCCATAAAAAGAAAGTAAGCCCAGAGTTTATTATAGACCTACGTAATCGAGGCTATAGTTGGTATAAAATTTTTATTTATTTAGGTCTTAAACCAGAAAGGGAGTTTGAAAAATGGGTTGTAATCTATCAGCCCGCTTATGGTCCCCCTTATGGTAAGGCTTGGGGATACCATAAAAAACATCCCACCCGTAAAATAGTTTTTAATGATCATGACTTGATAATATTATCTAATGTCCATTTTATGTCAAACTATTATCAAATAAAACCTATAAAAATAAGAGAAGGACTTGAGAAACATCGAAATATTTTAATATTACACGAACATCTATTTAAAAACAAACACCGAATAAAAAATAATAAATAGT # Right flank : AGTGTTTTGAAAAAAATTTAAAAATCAATTTCTAGTTTATGTCTTTTTATGAATTCTAAATCATCTATATAGGTAAAGCCTTTGGTAGTTAAATAATTTCCTGTCATTAAAGCATTGGCTCCTGCAAGGAAAATCCAAGAAGCAAATTCTTTAAGTATAGGTCTTCCTCCACAAACTCTAATATCTTTTTTGGACAAAATAATTCTAAACATAGCAATAATTTTTAAAGCTTCAAAAGGAGACAAAGGGTTGATATGTGCTAAAGGAGTTCCTTTTATTGGTGTAAGAAAATTAATAGGTATAGAATCTACATCCAGAGATTTTAAAAAGTATGCCATATCAATTCTATCTTCCCAGGATTCACCCATTCCAAAGATACCACCAGAGCATATAGAAATTTTGGCTTTTTTCGCTGCTTCAAGAGTGCGAACTTTATCAGCAAATTTATGAGTAGTACATATTTTAGGAAAAAAATTTTCTGAAGTCTCAATGTTACAGTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTGCAAGCCTACCTTTGAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [83.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //