Array 1 56499-55514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESHW010000003.1 Pectobacterium brasiliense strain A1 NODE_3_length_123965_cov_200.789261, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 56498 28 100.0 32 ............................ TGCGCGATGTCCTGCGCACTCTGTCCGGGCTG 56438 28 100.0 32 ............................ GCCCCTGTCAACCAAATATGAGGCCGCCATTT 56378 28 100.0 33 ............................ GTTAAAATTTCCCCAAGCGATGTTGCAGGACAT 56317 28 100.0 32 ............................ AACATTGTTCACTGCCGTATAGGCAGCTTAGA 56257 28 100.0 32 ............................ TGGCCAATGCTCAACCCCATTTGCTGATACGT 56197 28 100.0 32 ............................ ATATCAGCAATGAACGATGCTGCAAACGATTT 56137 28 92.9 32 ...........C.....C.......... CGCGCTAATAGCATTGCCGCTAATATCACTGT 56077 28 92.9 32 ...T.............C.......... CTTGTTTCTTTTACAGTATGTGAAAGGTAATT 56017 28 96.4 32 .................C.......... AAAGTAGTCGGTGGTCGCCAAGTCATCATCGC 55957 28 92.9 29 ...........C.....C.......... ACGGTTCGCTACGCCGCCGCCGGTGCATT 55900 28 92.9 32 .................C.T........ CGAGCAACACAGTATTCATCGCTGTGGAAAAT 55840 28 92.9 32 ...........C.....C.......... CGCTCGCGCACCTGGCGTCAAGACCCCGATCT 55780 28 92.9 32 .........T.......C.......... GTCCTGCCAAGCCATAACGGGCTTTCCGGCCA 55720 28 92.9 32 ...........C.....C.......... ATCAGATAATTTCCTCATCAAACAGCAGTTCA 55660 28 89.3 32 ...........C.C...C.......... ATCGAGGACGAGCTTTGCGCGTCCATTGGATA 55600 28 96.4 32 .......A.................... ATGACTGATTTATTGAGCAAAGAAAGGATGGA 55540 27 71.4 0 ............GC...C..-..C.GCG | ========== ====== ====== ====== ============================ ================================= ================== 17 28 94.3 32 GTTCACTGCCGTATAGGTAGCTTAGAAA # Left flank : AGGCGCTCTCGACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAGAGCTTGTCTAACGGGCAGATGTTTTTCGTGTTTGTAGAACATGGCCCGCTACAGGATGCACCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGACAAGAAAACCATATTCTCTTTAACAATCTGGTGGTTATCGAAAAAATTCAACT # Right flank : ATTATCGGGATGCGTCGCTGGTGCGACGCATTTTTGAGGACTACTCCCCGTTGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATAGGGATCGTTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCACTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAACGCCGCCGAGGTATGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGGGCGATAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCACGTGCCAAAATCGGT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 65422-67009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESHW010000003.1 Pectobacterium brasiliense strain A1 NODE_3_length_123965_cov_200.789261, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65422 28 100.0 32 ............................ AATAAAACGCAAGGAATAATCGCGTTTTATCG 65482 28 100.0 32 ............................ ATGCGTCCTTCTGCTGCTCAAGGGCTTCGACG 65542 28 100.0 32 ............................ AATAGTGTGGAACAGACCGCGCTTTGCGCCGC 65602 28 100.0 32 ............................ TGTTTGGCGGCGCGTACTACCAACTCCGACGC 65662 28 100.0 32 ............................ GGAGAAATTATACAAGAACTGGTGAAGTGTCA 65722 28 100.0 32 ............................ AGGCTTGTATCCGCGCTCGGCTTCTATGCGGA 65782 28 100.0 32 ............................ AGTCTGCCGGATAACCTGTCTGTCGGTGGCTC 65842 28 100.0 32 ............................ GCCAGATTGCATCGCCAACACATCCAGGTGGG 65902 28 100.0 32 ............................ ATGACATTGGGCAATACCGCAGGGTTAATTGC 65962 28 100.0 32 ............................ TAACACGCGGGTTTTGTCCGTCGCCTGTATCG 66022 28 100.0 32 ............................ TGCTAAGCCGATCCGGGCTTTCAGGCCACACC 66082 28 100.0 32 ............................ ATTGCGACACCGGCGATCAATTTCGAGCTGGC 66142 28 100.0 32 ............................ GATTGCATCAGCAGCTTTCGCTTGACCGTTCT 66202 28 100.0 32 ............................ GAATGATGACCTCGGCGGTAGTGTAACGTTCG 66262 28 100.0 32 ............................ TGCGCGGTGCGGGTGTAGTTCTCAAACAGGAA 66322 28 100.0 32 ............................ GCGTTTCTTCGGTGATGGCGGGATGAATGTTT 66382 28 92.9 32 ...........G.T.............. TAAAAGAAAAGCGCGAAATAATCGCGTTATGG 66442 28 92.9 32 ...........T.T.............. AGTTTTCTGAACGCTCATCAGCAGACACATCA 66502 28 89.3 32 ........T..T.T.............. GGGGAATTCATCTTCCAGCTTCATTGTTGCTG 66562 28 92.9 32 ...........T.T.............. TTACGCGATATCCGCGCCAGCTCGGTTTCTCC 66622 28 92.9 32 ...........T.T.............. AAAGAGCTATTTATGGGTGCGCAAACCGCTGA 66682 28 96.4 32 .............T.............. TGAACGGACAATGCAGGGAGATCGGCACCTGC 66742 28 96.4 32 .............T.............. GGACAACTGGAGCATTGCGGCGCGGCAGTGGT 66802 28 89.3 32 ...........GTT.............. TTAGGGTTGTAGAATCCCCTGAGCCAGTGATT 66862 28 100.0 32 ............................ TCTGACGTGCATGCGTTCACAAATTCGGCCAT 66922 28 92.9 32 ...........A.T.............. AAGAGATACAAGGATGTTGCGGCGGTATTACC 66982 28 78.6 0 ...........T........T...TCCC | ========== ====== ====== ====== ============================ ================================ ================== 27 28 96.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCTGGCTACA # Right flank : CCTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAGCACTATCGTCAGTATTTGATGCGTTATCATCGTTAAATAACGTATTTCTGATTCCCCTTTCTCGTAACATTTTTAAGTAATGGGTTTCTTTGTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGACCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 73424-72916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESHW010000003.1 Pectobacterium brasiliense strain A1 NODE_3_length_123965_cov_200.789261, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 73423 28 100.0 32 ............................ ACTCTGTCCACTGATTTACATCTCCGTTTCTC 73363 28 100.0 32 ............................ GCTTACCGTGATATCGCGGGAGTCTGGACGAT 73303 28 100.0 32 ............................ AGCAAAAATCACTCTGGCGTACGGTAGTGAAA 73243 28 100.0 32 ............................ ATCCGGCCTTATGAGCAGTGCGGAGGGCAGAA 73183 28 100.0 32 ............................ AGGTGAAGAGGTTTTCTGTCGCTGTTATGTGA 73123 28 100.0 32 ............................ GTCTGCGCGTTGTTGGCAGCCAGAAGTGAAAG 73063 28 100.0 32 ............................ GGGAAAATCGCGCCTTGAGTTTTACGACGCAC 73003 28 100.0 32 ............................ AGTCGCTCAACGTAAGCCCCGCGATTTTCTCA 72943 28 82.1 0 ..C........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGACGCTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAGTTTATATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGACACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTGGCTGTGGCAGATCTGCCTGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAAAGCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //