Array 1 968-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKBU01000022.1 Rubrobacter taiwanensis strain Yellowstone NODE_22_length_32691_cov_63.525711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 967 37 100.0 35 ..................................... GCTGCGCGATCATGGACTCCCGGGGCGAGGTGATC 895 37 100.0 36 ..................................... CGCAGGGACTTCTGCGCGAGGAGCTCGGCGTAGTAT 822 37 100.0 37 ..................................... GGGACGGCTGGCGGACGCCATGGAGCGGTTCGTGTGG 748 37 100.0 35 ..................................... TTCTCGGCGAGGGCCTCGCGCTCAGCGCGGTGCCA 676 37 100.0 36 ..................................... TCCGAGTAGCCGGGGGTGGAGCGCAGGAAGCCGTAG 603 37 100.0 37 ..................................... CGGGCGAGAAGTACGTCTTCTCAATGTACGTTCAGGG 529 37 100.0 36 ..................................... GTGCAGCAGCTCGCCATTTGCGTCGAACTCCCGGAA 456 37 100.0 36 ..................................... ACTCACCCCGCCTCACGGCTCCAGATTACCGCTAAG 383 37 100.0 37 ..................................... TGGGCCGCAGCGCCGGGGTTGCTTCCGACTCGCTGGA 309 37 100.0 36 ..................................... ATCTTCGCGCCGCGCACCCGCTTCGCCGCCCCCTCC 236 37 100.0 38 ..................................... GGGCTTTTCCTCTTCCCCATACCCGGCATTCTATGCCG 161 37 100.0 37 ..................................... AGTAGTCGAGCACGTGACGCATGGTGGAGCGCGTTAG 87 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 36 GTTGCAGACACCACTCCGCTACATAGGAGACTGAAAG # Left flank : CATCGAACGGCAGCCGGACGGGAGAGCTCACAAGCTCCAGCTTTCCGCTATGGCTACGGATCTCGAACCCGGCTTCCCGCAGAGCGCTCACGTAACGCCGGAGCGTGCGTTCGTCCCGCCCGATGCCGAACTCTTCTTCGAGCCGGGCCAAGAGCCTCTCTCTCGATGCAGCCCCCTCCGAGAGGATCTTCAGCACCGCGAGCGTGCCCAGTGTAGCCCCCATCCTGCTCACCTCAGCCCCCCTCTTTCGCAAACCCCTGTAGCAAGGTGTGCCAATCCTTCCGAGTAAGCTTGCAGCATTATCCGGTAGCAGCTCATTTTACCTGCAAACCTGCGACAAAATGTCTTTCGCAAACTCCCCGCCGGCCGGTGCAGAAGCCCAGCTTTCGAAGGTAGCTTCATCTGCAGGATCATGCTAGCATCCAAAAACGAACACTTGAGCCTTGAAAACCGCGAATCTTCGCGGAAATATATACCATACAATCTGTTGCATGGGTCTG # Right flank : GGTGCCCGAGGAGGGGGTGAGCGGCCATTAGCTTCGAGGGTTGCAGACACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGACACCACTCCGCTACATAGGAGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 1-330 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKBU01000054.1 Rubrobacter taiwanensis strain Yellowstone NODE_71_length_242_cov_40.855373, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1 37 100.0 36 ..................................... GTGATGTTCTTTATAGCGTTCCAGGCCGCTGCGACG 74 37 100.0 36 ..................................... GCCTCGTGTGTGGCGCGAGGCTACCGGCGGCGAGGA 147 37 100.0 36 ..................................... GCGAAGTACGAGCGGTAGGTGTGGTAGGCGGGGGTG 220 37 100.0 37 ..................................... TTGCTGCGGTGCTCTCGATCGTACGCGAGCGCTGGAA 294 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 36 GTTGCAGACACCACTCCGCTACATAGGAGACTGAAAG # Left flank : | # Right flank : | # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGACACCACTCCGCTACATAGGAGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 41-1181 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKBU01000016.1 Rubrobacter taiwanensis strain Yellowstone NODE_16_length_117837_cov_68.600914, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 41 37 100.0 36 ..................................... GCGTGGGCCTGCTGGGACCTCATGCGTGCCGATTGG 114 37 100.0 36 ..................................... TCCTCATAGCGGCAGCCGCCATAGCCGCCATAGCCG 187 37 100.0 39 ..................................... GCGTAGAGCACGAACCTCTTTCCGTGCTGCTCAATGAGG 263 37 100.0 37 ..................................... AGGCCGCATCGGCGACGCGCAGGTTGAGCCAGTCCAT 337 37 100.0 36 ..................................... AGGGTGACGATTTGGACTGGCCGGATAAGGAACAAG 410 37 100.0 37 ..................................... CCAAGGTAGGGGGTGGGGTATCGGGGTGGGGCTATGC 484 37 100.0 36 ..................................... AGTTTTCCTTCGCCACCATCCCCGCGGGCCGGGGAG 557 37 100.0 36 ..................................... GGCGTGCCAGCGCGCCTTCTCCAGATCATTGAGTAG 630 37 100.0 38 ..................................... ATCTCCTCAAGTCGGCCCAGAACCTGAAGCTGGGAGAT 705 37 100.0 36 ..................................... CGGATGCGGGATCGGCTATGATGCCAGCTACGTGAG 778 37 100.0 37 ..................................... TGGTCCACAACTGTGACCCGCCGTACCTGCTCGACTC 852 37 100.0 36 ..................................... GCAGCGGCGGGTCGGGGATGCGCTCGATAGCAACCG 925 37 100.0 37 ..................................... AATCCGGCTTCTCCTTGCCCTCGGCCTGCGCGCGGGG 999 37 100.0 36 ..................................... ACGATCGAGCGGATCCGGCTCGACCAGGCGATCCCA 1072 37 100.0 36 ..................................... GCGCATACCCCACTGCGAAAACGAGCGCCGAGAGGA 1145 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 100.0 37 GTTGCAGACACCACTCCGCTACATAGGAGACTGAAAG # Left flank : AAGGATGGCACAATTAGGACGAGGCAATATCCGCCTGGCAG # Right flank : GTCGACCTCCGCAGGCTCGGCATCGAAGCGTCCGAACGCGAGATGGCCGAGCGGGCCACCCGGGAGCTCATCTCACAGCTCGACCGGGAGGTCGGCTACAAGATCGACCCACTCCCGCGCAAGCTCTACCGGGCTATGGATCTTCTCAGGAGTAGCAGGTCCTTGAGACCGCTGGCCAGAAAGCTCGCTCGTTCTCTGGCCAAAGCCGCCTCAACCTACGCCGAGGTTCGCGGAGAGCTTGCGGCCAACGAGGAGCAGGGCACGGGATGGTGGGAGTGGGTAAACCGCGACGACGAGCGGGTGCGCCGCTCGCACCAGAACCACCCCATCGGAGTGGGCCGGACGGTGCGGCGGGTAGGTACGCTGTTTGCCAACGGCTGCCGGTATCCCAGAGATCCTTTGGGACCCGTCGGCGAGGTGGTGGAGTGCCGCTGCCGTACACGCCCGGTCCTGCCTCCTACGGGCGGGCCTGGAGAGGGCGGAGAGGGGGGTGGGTCCGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGACACCACTCCGCTACATAGGAGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //