Array 1 191635-193800 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKO01000005.1 Actinomyces oris strain F28B1 F28B1_contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 191635 29 96.6 32 ............................G GAGAGAGACCGATGAGCATGCGACTGTCGTTC 191696 29 96.6 32 ............................T AGAGGGCCTCATATTAATTCAATCTTTATGCT 191757 29 96.6 32 ............................G ATCGCTGATCATCTTCTCCTTATCCTCAAGCG 191818 29 100.0 32 ............................. TCCACCGGGTACGATAAGAAACTTATGGACCT 191879 29 100.0 32 ............................. ACCATCGAATTCAACACTAGTGAATTCTCCTG 191940 29 100.0 32 ............................. CCCTCCTGAGAGGACTCCCCGGTCCCGTCACT 192001 29 100.0 32 ............................. AGCGCTTTTCCCATTTCCCAGGAAAACAGGGC 192062 29 100.0 33 ............................. CAAATCCAGTGGCAGTGCCAAGAGCACAACATC 192124 29 100.0 32 ............................. TCAGAGGTGGTCTCAAGACTCGTGTCCGCGAT 192185 29 100.0 32 ............................. CGCGGCACTGAGGTTCTTCGGGGATATGGTCA 192246 29 100.0 32 ............................. GAACTGGACATGATCGATAGCGACCGCAGGCG 192307 29 100.0 32 ............................. TCGTTAAGCGCGACCCCTTCCTCACAATGAGG 192368 29 100.0 32 ............................. GCCGGTGGTGGCAGCGGGGCGCCCGCTCCTGG 192429 29 100.0 32 ............................. GTTTGATTACTCGGTTTGGGGTCCGGGTACGG 192490 29 100.0 32 ............................. CGCCTCCAACTGGGCCGTACCACCCTTAACCA 192551 29 96.6 32 ............................G AATTCACGTTCATAATCCCCAGCAGCGTGAGC 192612 29 100.0 32 ............................. CATGGAGAAACGCATCCAGCGACGCGTTACCG 192673 29 96.6 32 ............................T GTGGGGACGTGGACGGGGGATCAGTACAACCG 192734 29 100.0 32 ............................. CCCGTGTACACGGCCATGGGGGCGTTTATTAC 192795 29 100.0 32 ............................. AAGGATACCGGCACTCGTATTGATAACGACGG 192856 29 100.0 32 ............................. GGTGTTCAGGCATTCCTGACCACGAAAGATTT 192917 29 100.0 32 ............................. TGTTGATCCATGTCATCCTCCTCGGATGATCC 192978 29 100.0 32 ............................. CTCTCGCAGTACTGTTTAGCCCGCAGGAACAC 193039 29 96.6 32 ............................G ATCGGCCCGGAGAACGCCTGGAAGGCGCCTCC 193100 29 96.6 32 ............................G ATTTTTTCGTCATTGCGGATACGTCTCTTGAG 193161 29 100.0 32 ............................. CATAATAGGGACACTCATAACACTAGGGAAGT 193222 29 100.0 32 ............................. ACGGCAGTCAAGAGGATTAGTTGTCGTCTCGA 193283 29 96.6 32 ............................G TCGGACCACGGGTACCCGCGGTTCACGTGCAC 193344 29 96.6 32 ............................G GCCGACCGGGCCATCTACAGCAAGGCTGACGT 193405 29 96.6 32 ............................G GGTCGTGACGGCAAGAAGTTCCATCATGTGGT 193466 29 100.0 33 ............................. GTCATCCTTGTCATCTCCAGTCGAGGCGGCTGC 193528 29 100.0 32 ............................. ATCGCCGGGGTCCTGGCCTACCTGCTCGCCGC 193589 29 96.6 32 ............................G GCGCAGGGTCCGGTAGTCCCCGTGCCCTCGGC 193650 29 100.0 32 ............................. ACCCGGTACGCAGGCGGCTCCTACGAGGTCAC 193711 29 100.0 32 ............................. CAGGAGCCCACTGTGACCCGGACCACTGACCC 193772 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.9 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTAGCTGGTGGGGCGAACTACGCCGGAGAGGACGCAGGGGGATGGTAGTCCTGGTTCTCTCCGCTGCCCCTGCCTCGTTGCGGGGCTCTATGACCCGCTGGCTGTTAGAGGTCTCTCCTGGGGTCTTCGTCGGGCATCTCTCAGCTCGAGTGCGAGAGCAGTTGTGGGAGCTGGTGCGCGCATACATCGGGGAGGGACGGGCTCTACTGATCTGGTCGGTGCGATCCGAGCAACGGTTCGAGATCGCCTCCCTGGCGCACGAACGTGAACCGGTCGATATCGAAGGGTGCCTTGTCATGCGCACCCCGTACCGGCAGATCGAGGGATCGCAGGCGATCCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGACGCTATCGGAACTCTGCGGAGCGAGCGCTAGGTCGGCAGTGAAGGCAAACGAGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAAGGATCCGCAAGC # Right flank : CCTCGCGGGCGGCCTCCCCGAGACGGTCCCAGGTAAACCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28759-30091 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKO01000025.1 Actinomyces oris strain F28B1 F28B1_contig026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================= ================== 28759 36 91.7 28 ..C...........G..........C.......... TCGTCCCGGTAGTAGACGACGTTCCACA 28823 36 97.2 28 ..............G..................... AGCCGCACGCCGTTGCGTATGGTCGAGA 28887 36 91.7 77 ..............G...AC................ CCAGGGGGATCTCGGTTGAGGTGATGATGCTGGGAATCAGTCACCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 29000 36 100.0 28 .................................... AACTGGCGAGGCAGGGCGATCTCCACGT 29064 36 97.2 28 ...................C................ CTCACGAAGAGCCAGGCGACGAACCTCA 29128 36 100.0 28 .................................... TGGGGTCGAGCCTCAGGTCGGGGTGGTC 29192 36 100.0 28 .................................... ACCGAGGCCGAGGCCAAGCGCGCCCTGC 29256 36 100.0 28 .................................... GCAGCATCACTCGGGTCACTGCCAGGCT 29320 36 100.0 28 .................................... TCAGTGATGAAACGGGCCACGCTCTGCG 29384 36 100.0 28 .................................... TACCCCCGCCCCCACATTGTCGCCCCTG 29448 36 100.0 28 .................................... CAGTTCGCCGGCCAGCGCCGCCTTACGG 29512 36 100.0 28 .................................... GGCTAGGCGTACAGCCGGTGAATCATCG 29576 36 100.0 28 .................................... TGTGAGCGTGCGACGGGAAGCGCAGGGC 29640 36 100.0 28 .................................... GGCCACGACCTCTCCCCATCAACCGCAG 29704 36 100.0 28 .................................... CGGCCGCCCTCGATGAGCGGGACCGGCA 29768 36 100.0 28 .................................... ACCCTCATGTGCAACCCCACCACCCAGC 29832 36 100.0 60 .................................... CCCCGATTGACGGCGAGCTCGACGACGAGCTGGGAATCAGTCACCAGNNNNNNNNNNNNN 29928 36 47.2 28 NNNNNNNNNNNNNNNNNNN................. AGCGGCGCCCGGCCCACTCCGCGGGGTA 29992 36 100.0 28 .................................... AGGCACGTCGCGTGCACGCCGTCGAACA 30056 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================================= ================== 20 36 96.2 32 GCTGGGAATCAGTCACCAGACCCCTTGATAGACTTC # Left flank : TCATCCGGCTCCTGTGCTGGGAGGCTCTCGCCTTCGACGACGAGGTACCCGAGGAGGAGCTGCGGCGCGAGCACTACCAGCGCAAGATCGCCGGGGTGCGCAGCGGTCAGGACTCCGGCGTCCTGACCGGGGACGTCGACCCCGGGGCGCTCATGCTCATGCTTATGTCGCTGACCGGCTGGTGGTCCACCGTGCCCCAGGTGGCGCGGATGCTGTGCGGGCCTCTCGATGACGAGGAGGCGCACATGCGTCAGCGCGCCGTTGTCGTTGACGCGGCACGTCGGCTCGCTGCACCCCGCGACTGAGCGCGGGGAGGCTGGCTGGGCCAAGATGGAGTCATGCGCGACCTGAACGACCTGACCCGCCCCACCGTCCCCTCCGGCGCCATCCAGGAGCGCATGCTCGCTGAGACCGAGGAGCGCCGCGGCGTCGTCGGCCCGGCACCGGCCCTACCCGACGACGCCGGAGTCCCCGCCGCCCTGCGCATATGTCACCTCGCT # Right flank : CAGAAACGTCTATCAAGGGGGTCTGACCAGCGCAAACACCTCGTCAGGGGTCAGAAGATCACGAGTTGTTGGGGCTCTGGCTCGGCCTCGACGGGTTCTTCGTTGCGGAAACAGAGCGCGTGCGACCACTCGCTGTCGGTGACGTACAGCATCCTCACCTCGCCACCGCGCGGCAGGTTGCTCCTGATCGCGCTCGCCCTACGACGCTCGCCGGCCACAGTCGGGGAGTAACGGACGTAGACGCTGTACTGCGCCATCCAGAAACCCTCATCCAGAAGAAGATGCCGGAAACGAGTCGCCTCCTTGCGCTGCTTCTTCGTCGCCACCGGCAGATCGAACATGACCACGCACCACACTGGATCATCCGCCATCAGGACTCACGCCTCGGACCGGTCCACGACGGGACATCCAAGCGGGCTCGATCCCCTTCGCAGTACTGGCCCAAGTGCTGAGCCAGCTCCTCCAAGACGGTTGGGAGCGTGGCACCGTCGTCACGGAAC # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGAATCAGTCACCAGACCCCTTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 3-3265 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKO01000045.1 Actinomyces oris strain F28B1 F28B1_contig046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 ....C.......................G CCTCGCGGGCGGCCTCCCCGAGACGGTCCCAG 64 29 96.6 32 ............................G CACATCGTCCGCTTCGGCACCGACCCGGAGTA 125 29 96.6 32 ............................G GTGGCCGTCAGCGTAGCGATCTCGGCCTCGGG 186 29 96.6 32 ............................G GACGGGTACCAGGTCACCACGAGCCAGATGAG 247 29 96.6 32 ............................G GCCTGCCGGACGGCGGCCTCGCCCTCGCCGAG 308 29 96.6 32 ............................G GCCCTCGCCCGTGCCTACCGGGAGTACAGCCT 369 29 96.6 32 ............................G GACTGCGTGCCCTTCTCTCCGGGCAAATCGAT 430 29 96.6 32 ............................G GTCCCCCGGCGCTGGCGACGGGCGGAGCCCGG 491 29 100.0 32 ............................. ACGTCCGGAATCTTGAGGCGGCGGGTCGGCGG 552 29 96.6 32 ............................G GGCGGTGAGGCTGTCCAGAACGACGGCCTTGT 613 29 100.0 32 ............................. GATAGGTAAGCCCAATGAGTCCCACCCAGCGT 674 29 100.0 32 ............................. TCGACCTGGAGCTTGATGCGCATGTCCTCGTA 735 29 100.0 32 ............................. GCCGGCCTCGTCATCCGTACCCTCGCCCAGGC 796 29 96.6 32 ............................G CGGGAGAGCTTCTCCAGAGTCACGGGGTGATC 857 29 100.0 32 ............................. CCAGGATCGTCCTAGCGCGCCTCATGGAGGCG 918 29 96.6 32 ............................G ACCCGCACCGACATCGCCCGCGAGCTGGGCCG 979 29 96.6 32 ............................T GGGCGCATTTATTACCGCATATGCCCGAAAGG 1040 29 100.0 32 ............................. GACATCTACATCATGGCGCAAGCGATGCGCGT 1101 29 100.0 32 ............................. GGCTTAATGTACACATCCTGGTACTTGCTCTG 1162 29 96.6 32 ............................G CGCTGACATGAGCAGGTACTCGTCCCAGTTGT 1223 29 96.6 32 ............................T GACGTCCACGACGTTCACCACCCTTCCTGGGC 1284 29 100.0 32 ............................. TGCTCCGTGAACTCCTCTGGTGAGATAAACTG 1345 29 100.0 32 ............................. CTCACCCAGACCACTGTGGTGGCCGGGACCGG 1406 29 100.0 32 ............................. TGCTCCGTGAACTCCTCTGGTGAGATAAACTG 1467 29 100.0 32 ............................. CTCACCCAGACCACTGTGGTGGCCGGGACCGG 1528 29 100.0 32 ............................. GGCTCGACGCCTCAGACTATGACTTTGAGGCA 1589 29 96.6 32 ............................G GCCGGCTCTACCGTGTTCGCGCGCGTCGAGGT 1650 29 96.6 32 ............................G GTCGGCAACCTTCAGGACGTGCTAGTCTCTCT 1711 29 100.0 32 ............................. CGCGGCGCTGTTCTCTGACGGCAGCAGGAAGA 1772 29 96.6 32 ............................T GTCCCACCAACCCATAGTCCTGAAATCGTCGG 1833 29 96.6 32 ............................T GTCCCACCAACCCATAGTCCTGAAATCGTCGG 1894 29 100.0 32 ............................. AATGACCACCAACGACCTCCTCGCCGAAGAGA 1955 29 96.6 32 ............................G TCAATAACCACCAACCCACCACACCACAACAG 2016 29 100.0 32 ............................. ACCATCACCTCACCCACCACGCGAATGTGGTG 2077 29 100.0 32 ............................. TGAGTGTCCTGCTCATGAGCACCAGCACGCAG 2138 29 96.6 32 ............................T GTTGTGTTCGCGAGTACCACTCCACCGGGTAC 2199 29 100.0 32 ............................. CACAACTCAAGGTCTACTGACGTAATCGTCAC 2260 29 100.0 32 ............................. GATGACGCCCGCTTCTGCGAGGGCGACAGGTT 2321 29 100.0 32 ............................. CATCATCACCGACCAGGGCGACCAGTACGTGC 2382 29 96.6 32 ............................G GCGGGCGCCGTAGTCCGCAGACGAGACGCTGC 2443 29 96.6 32 ............................G GCACCACCCAGAACAGGTGATGCCTTTCAGTA 2504 29 100.0 32 ............................. AACGACCCAGCTAATGAAGGGTCCAGTTTCCC 2565 29 100.0 32 ............................. TAATGCGGTTCTTGATAGTCTTACTAAAAGGG 2626 29 96.6 32 ............................T CGCCCGTACGTTCAAGAATTGTCTGTGTCATC 2687 29 96.6 32 ............................G CAAGTTCGCGAGGCTTCATAAAGGACTCGCGC 2748 29 96.6 32 ............................T ACCCGTTTACTAAGCCGTTTTCCGTCTTAGGG 2809 29 100.0 32 ............................. CCGGCAGCAAGTACGGGCGCTGGTACGCACAA 2870 29 96.6 32 ............................G GTCCTTCGCGCCCGAGATGCTCACATTAGAGA 2931 29 96.6 32 ............................G GCAGCCTGCACCAGGGGCCACAGGATGCCCAG 2992 29 100.0 32 ............................. TCGCGCTTCACGTTGTCGTTGCCGGTGAAGGA 3053 29 96.6 32 ............................G AACTACGGATGGCCCAGCCCTGATGGCCTCGT 3114 29 96.6 32 ........T.................... TCGCGCCCGGGGGCCGTGTCGGCCTCGCGTGA 3175 29 100.0 32 ............................. TGCGCAGCAATGGTGGTGGGAGACCATGGCGC 3236 28 79.3 0 ..G.......T.....T.....C.-G... | A,A [3256,3258] ========== ====== ====== ====== ============================= ================================ ================== 54 29 97.7 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : CCG # Right flank : CGTGTGCTTGAGGTGGAGTGACCGGCTCATGAGTCCGGGCGGGGTGCCTGGACTGGTGCCCACCTGGACCTCATCAAGCGGGAGGTCGGCTGCGTGGATGCCTCCGTTGTGGCGGACCCGGCTGCGAAGGAGCCCACCGCCACCGTCGAGAAGGTCACCGAGACGGCCACGAGGGGGGCGGCCGAGGCCTGACTCAACACGCTCAGTCGGTTAACTTTACAAATACATCTGGTGTGATGCAGGATAAAGCCGTTGCTCGGCCACCAGGGTCTGGTCGGGCAACGGCGTGCTCCTGTTCCCCCAGGACCGCCTCTGTCATCTCCCTAGCCGGTACTCATCAGGCCGCCGACACGGCGGTCTGAGGGGCGTGCGCGTGTCCCCTCCCTGGGCCGGGCTGCCGGCACTCTCATTAAGAGGTATTGACAATGAGTGTCAAAGGTGCCGCAGAGGTCATTTTCTCCCCTCCGGTTCAGAACTGGTTGAAGCGGGCGATCTACCGT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21975-21211 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKO01000067.1 Actinomyces oris strain F28B1 F28B1_contig068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 21974 37 100.0 33 ..................................... CTCATGGTACCATTCACCGAACCTGTCAGTGAC 21904 37 100.0 36 ..................................... TCTTGTAGAGAAACCACAGCCTGAGCGTGGCTTCTA 21831 37 100.0 38 ..................................... TCTCCTCAGTGAAGACTTGGGTACTGAAGTCTGGGAAG 21756 37 100.0 38 ..................................... AGCATCGCTGAAAAGTCGCATTATGGATCCTCTTTCTG 21681 37 97.3 34 .............................G....... GGCTTCCGAGCGGTCTTCAAAAAGGCTCATGAGA 21610 37 97.3 37 .......G............................. GCTATCGCAATGATAATGACAGCCAGGGTAATTTTCT 21536 37 100.0 36 ..................................... TTGATGTCCCAGCCAGGTGCCGTGTTGTACACCTCG 21463 37 97.3 35 .C................................... ATACTGGCAAAAGCCTTGGCGTAAGCAATCTCCTT 21391 37 100.0 32 ..................................... TTGCGTTCATGGTGGTTGCTCCATGGTCGGCG 21322 37 91.9 37 .C...........TC...................... ACCACTCGCGCCTCTCCCAGCACGGCGGAATCACTCC 21248 37 81.1 0 .........................CGC....C.CGG | T [21216] ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 96.8 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CATGGAGATCGCCTTGGCGGTCCTGACCTTCATAGGGCTGCCGCTGAGCGTGTTCCTGGAGATCTGGTCCAACTGGGAGGCCGCCAAGGGTATCGCGGTCCGGCACCAGCGCATCGGCGGCTGGGACGCGGGATGGGGGTGGATTCTTGGCTTCGGTCTTATCGGGTCGATCCTCATCGGCGGTGGGATCTGGCTGCTCGTCGACAAGGTGGGCGGCCGGGTGGCTCGGCGTAGGAAACGCTCCTGACGCCGAGTCCAGGACCCGGTTCCACCTCCACCACAGCAGGATGTGCCCGCAGTCACGGGCGGGAACGTCGACCTTTTGTCGTCGGAAACTGGTGGCTGAAGGTGCCTGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAAGGGTACTGCTGGCCGGCCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCGTTCCCAGAGGCAGGGG # Right flank : GGCTTGTCGTGCGGTGGTTGCCAACAGCGTTGGATAACGGCCGTCCGACCGCCAGTCCCTTGAACAGGCCCTCCGAGTCGCCCCGAACCACCCCGCCACCACGGGCGCCGTCCTCCTCGACGGCAATCAAGGCCTCCACCCCAGGCGGATTCGTGCCAGGTGAGCTCGCGCGATTCCAGGAAACGTCACGCAGCCGAAACGCCTCTACCGCGGGAGCCGGCCAAGCGGACGCACACAAAAGCGGGCGGCCCCGAGAAACTCGATAACCGCCCACTCGCTGCTGATTTCTCACCTGCCCACGAACAGCAGGACATCAGTCGCCCAGGCGGCCGGGCCGACAACAGCCCAGCCAAGCCGCCTCGCGCGCCGCCCCCGCTTCAGACGCGGCGCAGACGCAGGATGACGAGGCCGCCGGACAGCAGGATCGCCGCCACGGACAGCACACCGATCGCCACACCCGTCACCGGCAGCCACCGCTCCCGGACACTCTGGGCGGAAGG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 36429-35592 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKO01000067.1 Actinomyces oris strain F28B1 F28B1_contig068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 36428 37 94.6 31 .....................C...........T... TATGGCGATGGCTGTACCAAGCACGACAGCG 36360 37 97.3 36 .................................T... CCAACTAGGCACAAAGTCGAAGTCCGTGTTGTTCTT 36287 37 97.3 36 .................................T... GCGAAATAGGAGGGGTAACAAGTACCCAGTTTTGTC 36214 37 97.3 36 .................................T... ATCTTTCCGCCATCCTGGGGAGTATTGATGCTGTCC 36141 37 100.0 37 ..................................... GTTGAAGACCTTCGTGCTGAGCATGATGACTCTCTCT 36067 37 100.0 36 ..................................... CACATCTCGGCGATCATTCCAGCGTTGACCCCAGAC 35994 37 97.3 37 .................................T... TGCAGGTGCTCATGCCCGAAAGTAACGACGCTACCTC 35920 37 94.6 35 ................................GT... ATCTCAGACCCCTGTCATTGCGCCCTACATCTCGG 35848 37 100.0 36 ..................................... TCGGCATACTCCCGCAGGACGTCCGTGGCCCGCAGG 35775 37 100.0 37 ..................................... TTCTTGCGCGCCACCCAATACGCCAGGGTGGCCGGCA 35701 37 94.6 36 .....................C..A............ AGTGCTGTGGCCTGCCACCCGCCCACTGCGTCCTTG 35628 37 89.2 0 .C...................C.........G...G. | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 96.9 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : AAGGTGCATTATGACTATGGCGATGGCTGTACCAAGCACGACAGC # Right flank : ATATATCGGCGTGCACCGGGACACCGCATGCCGATTTTCACCCTTGTCCGCCGGTATCTCGATATCCTGTCCTCAGAGCCTCTTCACGTTCCCGCCCTTGAAAGGCCGCGATGATGCGTCCAGACCCGCCATCACCACCACCATCGTCAACGACACCGCCATCCACACCCCGCCCGCACCGTCGTCGTCGCCGTTCCGATCGCGCGAAACCGGGCCAGCATCTCGGGGAGGACATTCACCCGCTCCAGCACGCAGCAGGATTTACGTCGTCCGAGCCGACCACCGGCACCCCGTTCGAGCGCATCAGCTCCCGCGAGGGCCTGGAGGGAGGCTGGCGCATGGTTCTCACCAAGGACGCCTCCGACGGCATCCTGCAAAAGAAGACCAAGGAGTTCGCCGAGCATCTCGACGACTTCCTCACCGAGCTCTCCGAGTCCCTGCGCTCAGGGACCTACGAGCCCGAACCGCTCCTGAGCTTCGGCATCCCCAAGGGCAACTCC # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTATGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 21971-24501 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKO01000050.1 Actinomyces oris strain F28B1 F28B1_contig051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 21971 27 100.0 34 ........................... CGACGCGGAAGGTGAGAACCGTTGTGTCCTCTTG 22032 27 100.0 34 ........................... CCCGGGCTGGCAGTTCCACGCCCTCAGGTAGGTC 22093 27 100.0 34 ........................... CCTGGGATGAGTATCTTATGATGACGTCTCTGTT 22154 27 100.0 34 ........................... CCCGTATCGGTCTGGTTTACGCGCGGAACTCCAT 22215 27 100.0 34 ........................... CCAGTCCGCGAAACCTGACTGGTCGGGGTTAAGC 22276 27 100.0 34 ........................... CTGATCCGCGCCGAGAAGGTCCCCAAGACCATCC 22337 27 100.0 34 ........................... CCAGTGGTGTTCAATAACTTTTATCTTACGGTAG 22398 27 100.0 34 ........................... CGGTCGGCCACGAGTTGGGCGTCCTGCTCGGCCG 22459 27 100.0 34 ........................... CTGTGCCGTGGGACTCCATGTACAGGGATGTGTA 22520 27 100.0 34 ........................... CCCAACTTCTCCCAACTTGCTTGAGAGTGCGTCC 22581 27 100.0 34 ........................... CCATCAGTCCCCCATCTTGAGACTGACGCGCAAA 22642 27 100.0 34 ........................... CCAGTTTGATTTCGTTGCCATCATCATTTCAAGC 22703 27 100.0 34 ........................... CCGGTTGTTTCTCCGTGTGGACCGACCTTCCGAT 22764 27 100.0 34 ........................... CGTCCTCACGATCCACCGTATGGAAGGCAGTCGC 22825 27 100.0 34 ........................... CTTGCCATCAAGAACGCAATCGAAAAGGGCGAGC 22886 27 100.0 34 ........................... CCTCTTATAACGCGCAGCATGGCACTACGACAGT 22947 27 100.0 34 ........................... CCCCACAGATTCGTTATCTTGATAATGAGACGGT 23008 27 100.0 34 ........................... CCAGTACCGATCTGGGAGGTCCTAATGAGTAACT 23069 27 100.0 34 ........................... CTGATCCGCTCCAAGAATCTCCCCCAAATCGCTG 23130 27 100.0 34 ........................... CCCTCTCCCCTACGGGCGTCCCTGGTGGTCAGAG 23191 27 100.0 34 ........................... CCTTACGATGTGCGAGCACGAGGAGTCTAACCCC 23252 27 100.0 34 ........................... CCATGCGCCAGGGCATGGAAGCCAGGGGCTTCGA 23313 27 100.0 33 ........................... CCATCGGCGCGATCTGGGCCGACTTCGTGATCG 23373 27 100.0 34 ........................... CCCGTGCGATCAGCGGTATTGGTGGTGCTTTTGG 23434 27 100.0 34 ........................... CTGCTGTTTGATCTTAGTGTTCAACTCCTTACGG 23495 27 100.0 34 ........................... CCGCGGACTGCTCGTCCCTGGCCTGCGGGTCGAT 23556 27 100.0 34 ........................... CCTTTATCAACGGGGGCGGGGCCCTTCCAGGACG 23617 27 92.6 34 ............T..A........... GGACAGACGAAAGGGTTTGAAATGTGGGAGAATG 23678 27 92.6 34 ............T..A........... GGCCACCGGAACCATCACCAGCAACCAAACCAGC 23739 27 92.6 34 ............T.C............ CCATTTCCACCATTACCGGGAGCATTCACGCCGG 23800 27 96.3 34 ..............C............ GCGACTTCCAGGATTGGACGTATGAGGCCATGGG 23861 27 92.6 34 ............T..........G... GCGGGTAGGGGTGACACTTAGTTCCACAACCGGG C [23870] 23923 27 92.6 34 ..T....................G... GGGAGTACGCCGACAAGACCGTCTACGGCCTGTC 23984 27 96.3 34 .................A......... GGGTCACTGAGGGCACCGGCTACGAGAACCCTTA 24045 27 85.2 34 ..........T.T.......A..G... GCTTCCCGTCATCCTTAGAGCCCGCATGCTCAAT 24106 27 88.9 34 ...G........T.C............ GCGGGCTCTTACCCCATCCACGGGGACGAGAGAT 24167 27 88.9 34 A.......T...T.............. GCCGGATACGTCGGGCGGCACGCTGAGCCTCAGC 24228 27 92.6 35 ............T......A....... GGGCCGGGGACGATATCGTCTCGAAATGGGCTGAG C [24245] 24291 27 96.3 34 ............T.............. GCGGAATGGACAGGAGCCAGAGTCCAACCTTGAT 24352 27 96.3 34 ............T.............. GCCATGTGCGCCGGTCAGGCTGGGAGTAGCCGAC 24413 27 96.3 35 ..............C............ GCGCTGGGGACGACATCGTCTCGAAATGGGCTGAG 24475 27 88.9 0 .......................TC.C | ========== ====== ====== ====== =========================== =================================== ================== 42 27 97.4 34 GTCAGCCCCGCGCATGCGGGGGTAGAG # Left flank : CGGGCTGGATGCTGCCACTCATCGGTGGGTTGGGCCGCCGTCACCTGCCCGTCCTGCGGGGGGTGCTCGTGGCTGGGGGGCTTCGGCTTCCGTCCGTGGGACTCGCGGTAAGGACGGGGGTGGTTGAGGCCAGACTCGCCGAGACAAGGACATTGGCTTCCCTGCCTCGAGTTCTGCGGGCCGCTACCGTTCCTTCATTGCAATGGACCACTGTTGTGCCGACGGCGGAGGAGCCTGAAGGCATCATGGACATACTCGAGGAATGCGCCTCGGGGCTCGGCTGCAGACTCGTTGCGGCTGAGCGTCACTCCGACTCACGAAGCGACGGAGGTGTCGATGTGCAGCAAGACAACGAGCGCTGGCACGTCTCGGTCGCCTTCGACGCGAAGGTACCCGGGCCGGTGGTCTTCGACGGCACCCTCATGGTTCCCCTGGGGGCCACCACCTTGGCAGTGAACCCACGGCGACCCCGAGCCGACTAGCATCGCAGGTCAGCAAGT # Right flank : CGCGGACTTGCGGCTGACGTTGTCTTGGGGCGGGACCTGGTGAGAGCGCCCGGCCCTGTCACTAAGGCCTCGCCAGACCTCGCGGAGTCGGGCACGTCAGCAGCTCAGTGTCCACGATGCTGACATCAGCGGTCCCGTCGTCGGAACACCCAGAGAGAATCGTTGGAATTTCGCGGTTCTTTCTCGGGTCACGGCATCGGAGCGGCGTTAATGTCAGCGTCATGGACACAGGCGTCCCACCAGGGCGCTGTCAGCGACTCGCTCCTCAGAGAGCCGCGATCTTGAAGGTTCCGACCCGCCCCGCGATCCCCGCCGCCAGGTCCTCGATCATCCTGGCGTCGTGGAGGCGGGCCAGCCAGCCCTCCGGGATGCCGCTGCGCCCGTACAGCGCCCCCGCCAGCTGCCCGTAGATGGCCCCGACGGTGTCGGCGTCGTCGCCCAGGTTCACGGCCAGCAGCGCCCCGTCAAGGAAGGTGTCGGTCCTGGCCAAAGCCCACAGC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGCATGCGGGGGTAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-41] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 6650-5743 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKO01000073.1 Actinomyces oris strain F28B1 F28B1_contig074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 6649 37 100.0 36 ..................................... TCGCTCTCTCCTTCCCTGTTGCGTTCCTGTCTGATG 6576 37 100.0 33 ..................................... ATTGAGGGGATCGTGTTCTGGACTGCTGACAAG 6506 37 100.0 34 ..................................... AACACAACCGCCAACCTGAAAGGAAGACATCATG 6435 37 100.0 39 ..................................... TAGTGATCTCATGACGTTTGTTCGCATTGCCTGGATGTC 6359 37 100.0 38 ..................................... CTGTGTGTCATCCTCGTTGGACTAACCCTCCACATGAT 6284 37 100.0 35 ..................................... GACAGGGACGGCCGCGCCTACGGGATCACCGACGG 6212 37 100.0 37 ..................................... ACAAGGTCAAAGCAACCGGCAGACCCGAGTAAGACAA 6138 37 100.0 34 ..................................... ATGGCTTGTAAGCTTTGTGCCCGTGACGGTTACA 6067 37 100.0 36 ..................................... GAGTAAGGTCATCGACTCCTACGGTAACGACTGGAG 5994 37 97.3 35 ..........................C.......... CGTTGGGCGGGAGCCATTGCGCCCGGCGAGATCAT 5922 37 97.3 34 ..........................C.......... ATTCAGGTGGATGACTCACACCGAGAACGGGGAA 5851 37 97.3 35 ..........................C.......... TCAAGATTGAGGACAGCCTTGAGCATGACCATGAG 5779 37 97.3 0 ..........................C.......... | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 99.2 36 GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Left flank : GGCAGGTCGGGACTGGTGGCATGAATGGTCTCGCACAGGTCCAGGACCTCGCTGCGGGAGATTCTCGTGCTACTATTCGTCATGGCGGTTTGCTTCTTGGTTGGATTGGCTTGAATCACCAAAGATTCTCTCAAGAGCAAGCCGCCACCCTATTTAGCGACACACTATTAACGGCAAAACACCCCAAACACCCCTATGAATAAGCCTCAGGACACTGCTATCCGCGTCCTTGATGCCATTG # Right flank : CCCCTGCCTCTGGGAACGGCGTCGTTGCGCCACTTCCAGGGGCTGGAGCGCCACCGGCTCCGCAAGCACCCCGCGAGGCCGGCCAGCACCGCCCTTATTTAACCACTTTTCGGCATCCTGACGCCAAGCGCCACCGACACCCCCTCAGGCACCTTCAGCCACCAACTTCCAACGACGTCAAGCCAAAAGGTCAACGTTCCCACCCGTGACTGTCGACACATTGTGCTCCCGTGGCCCGGCCGGCGCGCCGCCGGCTCTCGTCCTCTCCGCCTCCTCCTGGCCGTCGATGCTGAAGAACGTCGACCCCTCGAACTCCCCGTACAGGCCGCCTCCCCTCCGGTAGTGTCGCCAGAGAGAAAGAGGCGGACGGCCTTGCGCCGGCCTCCCGCCACCAGCCGGCGCCGCCGTCGGCCTCCACTGCTGCACCCACCACACATCACGCCGCAAAGGAGCCCCGTCGAGTGCCCGCCACCGTATTCGTCCGCTTCGATGCGCCCGGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Alternate repeat : GTCTTAATGCACCTTCTGGTGCTGGGCGCTTTCTGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //