Array 1 422460-424440 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDJ010000001.1 Salmonella enterica isolate 4273_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422460 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 422521 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 422582 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 422643 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 422704 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 422765 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 422826 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 422887 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 422948 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 423009 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 423070 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 423131 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423192 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423253 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423314 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423375 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 423436 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423497 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423558 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 423619 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 423680 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 423741 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423802 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423863 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 423925 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 423986 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 424047 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 424108 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 424169 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 424230 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 424291 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424352 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424413 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440573-442177 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDJ010000001.1 Salmonella enterica isolate 4273_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 440573 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 440634 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 440695 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 440756 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 440818 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 440879 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 440946 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 441007 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 441068 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 441129 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 441190 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 441251 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 441312 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 441373 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 441434 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 441496 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441599 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441660 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441721 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441782 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 441843 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 441904 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441965 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 442026 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 442087 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 442148 29 96.6 0 A............................ | A [442174] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //