Array 1 12734-14777 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYDT01000987.1 Streptomyces acidiscabies strain 98-49 Acid9849_contig000001.1101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================== ================== 12734 36 100.0 36 .................................... CGGTGATGTACGACGCCTCGCACTTGCCGTACGACG T [12747] 12807 36 100.0 36 .................................... GGCTGCACCTCGGTCGGCGTGAACGCGGGCCAGCTC T [12820] 12880 36 100.0 36 .................................... AGCCCGTACTTGCGGATGTACGGCTTGTGGATCTCG T [12893] 12953 36 100.0 37 .................................... CCGTTGCCGGCCCACTGGTACGGCAGGCCGTTCTGGG T [12966] 13027 36 100.0 35 .................................... CCCCTCGCTCAGCACGTTAGACCCTAGGGTCTATG T [13040] 13099 36 100.0 35 .................................... GCGCTTGGGGTCGGTCGCGTGCCGCTCGTACTCGG T [13112] 13171 36 100.0 36 .................................... CCCAACCCCCCCACGTACGACCTCTACCCGAAGGAC T [13184] 13244 36 100.0 35 .................................... GGCAGACAGGGTGGTCACCCCAACTACCGCGCTGA T [13257] 13316 36 100.0 37 .................................... CGTACCGGGCGGGTGGCGTGGGGACCGAGGCCCGGCA T [13329] 13390 36 100.0 36 .................................... TACAACCAGGTCGTGGTCGAGACGGTGTGCGCGCGT T [13403] 13463 36 100.0 36 .................................... CGGTCCAGGTCGGTGTGTGCCGCTGGGGTGCGGCGG T [13476] 13536 36 100.0 38 .................................... CACAGCGACCGCAGCCCGTACCTGGCGCACTCGCGCTC T [13549] 13611 36 100.0 35 .................................... ATCTGTCTGTGCCGGCGCTCCGCCAGTACGACGTG T [13624] 13683 36 100.0 37 .................................... CACCGTGCGCCGCAGCCAGGCGAACCACGCCTCGGCG T [13696] 13757 36 100.0 38 .................................... ATGTCGGTCGGGGCGGCAGCCGACTTCCGGACGCCGGT T [13770] 13832 36 100.0 37 .................................... CTGCGCTGACCTGCACCGGAGCCCCGGTGTCAGAGAC T [13845] 13906 36 100.0 36 .................................... GACGCCGCCAGCGAGCGCCGTCCGCTGGTCGTCTAC T [13919] 13979 36 100.0 38 .................................... ACGGCCATCGGTAGCCTCCGCGTCGAGTACGGACCCGA T [13992] 14054 36 97.2 36 ........T........................... AAAGCGGCCTGCGCGCGGGCGGGGTTGACGCTGACG T,C [14067,14077] 14128 36 100.0 36 .................................... GTCGCCGGGCCGTACGGCAGTCAGCGCGGCCCGGCG T [14141] 14201 36 100.0 35 .................................... GGGATGAGCGTGCGCGGCCAGTCCCTCCTCACCGT T [14214] 14273 36 91.7 37 ...T...........A...C................ ACCGGCACGATCGCTCACACCTTCTTGCCCCAGGGGT T [14286] 14347 36 94.4 35 ........T....T...................... GAGATGACCTACGAGGAGTGGATCGCTACCCAGGT T [14361] 14419 36 91.7 36 ........T........A.C................ ATCCCCAGGAAGTTGCTGACCGTCGTGTACCGGACC 14491 36 94.4 66 ......C............C................ AACCGGAGCGTTGAACGGTTCTTCGGCAACGCCGCGTGGGCGGACCACTTGGGAGCCGAACGCCTG CCC [14504] 14596 36 86.1 35 .....A......TT.....C.....G.......... GCCGTCAACCGGACCGTGGCGACGGTGACCGGGAT T [14606] 14668 36 86.1 36 ........T...T..A..AC................ AGCGCGGTCCAGGCTACCGAGGCACAGCACGACCTG T [14678] 14741 36 86.1 0 ..C........TT......C.C.............. | T [14751] ========== ====== ====== ====== ==================================== ================================================================== ================== 28 36 97.4 37 GTGGCGGTCGCCCCCGGGGTGACCGAGGATCGCAAC # Left flank : TCCTCCGCCACGGCGCTCCACCGCACGAAGCCCGTCCTGCCACGCACACGAGCCTTTTCCCACGTCATGGACCAAGGCCAGGTACTCGGCCAACTCCCCTACCCCGAACACCTCCCCGAACTTCCGAGCCAGAGCCGCTGAACCCCGCAGATGCGCTTCCAGCGAATGCTGCTGCCCCGACACGTCGCTACGGCTGTGCGCGATCAGCACACCCCCGGACCCACCCACAACAGTCCCTCCCGGAAGACGCAGGCCCTTTCGCCGAGCCTTGGTGGGCCGAAACGTACACACCCTCACTGACAACGCCCGCGAAGAAGCCCTCAGTTCCGGTTAGGCTCCTCACCTCGCCGTCGAATCACCGAACGCCATGCTTCGGAACCTCTAGTGCACACGCGACACGCGGAACGCACCTAAGGAAAATGTCCACTTTGTTGGTGTCTGCTTCGCCCTGGACTTGTTCCCACCTCCACTCGATACGATGAATGTGCTGGTCAGCCAGC # Right flank : CAATTTGGAACTGTGCGCCAACTTGTCCGGCGGTCACATGCCACAGTCGGCCTCTGAGCGATCGATCCACTGACGATGGGAAATAAGCGGCACCGGCGGCATATTCGTTGTCCGGAGGTGAGTGTCAGGCGGATTGTTTCTGCTCTTTTGAGGTTCTTGGTAGTGGCGATCGCCGCATATTTGCTGGTGATGTCGTGTTGCCCTGCGGGGTGGAGCGTTTGGCTAGATGCGTGCGCGGAGACGTGGTAGGTGCCGTGTTGGGGAACTGTCTCCCGTTGGGATGAGCGGAGCTGGCAGCAGGATTTCGAACCACGTCGTCTTTCCCGGCGGGTTCGTCTGAGTTCCCCAGATGTCGGCAAGTGCCTCTACGAGGAGGAGGCCACGGCCCCCTTCGTCGTCCGGCCCTGCTTCAGTGACGGTCGGCAACAAGGAGATCATGTCGGTGACTTCGACACGGAGACTCTTGCGAGTGCGTGTCACGGCGATGCCGCACGGGGCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCCCGGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCTCCCGGGGCGACCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.40,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-63] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 403-554 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYDT01000578.1 Streptomyces acidiscabies strain 98-49 Acid9849_contig000001.645, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 403 29 100.0 32 ............................. AGGTCCAGCTGCCACCCGCCGTTCATCCGGGC 464 29 100.0 32 ............................. GAGCCGGCGACCTACACCCCGCCGCCGTTCCC 525 29 93.1 0 ..........................AT. | A [549] ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TCACCCGCCATGCCGGTGCGGCGGGGCGAGCCCGCCGATTGCGGCTCTCCCGCCGTACAGGTCAGGCGGGGACGGGCTCTCCGTTCGCGACTCTCCCGCCGTGCGGGGGGGCGCCGATACGGGGATGGCATCCGCACGAAAGTGGCCACCGAGGGTCGTGCGGCACGCGGGGTCAGGGGGGCGGCACCGTGTCGGAACACGACTCTGGGGACGTACGGTTCGGTACGCGTTGGGGGCGTCTCGGGGTTGAGGTTGTTCGATATCGCGTCCGCGCGGGGTTCTGGCGATGCACTATGAGGGGCGATGGCATCTTCAGGGAGGGACAGCGAGGGAGAAATATCCGTTTCTCTGGAAGTAACGGATTCCGGGCTGACGGCGGAGTAAAGCACCAGGTCGGGGTCTG # Right flank : CCGCCTCGCTTCCAGTTGTCCGAGGTCCGGTTGGCGGAGGAGTTCGGGGTGAACCGGGACACCGTGCGGAACGCGACGCGGTCGTTGCGGGAGAAGGGGTGGATCACGACGACTCCGGCGTTGGGGTCGTTCGTGGCGGATGAGCGGCCGAGGGGCTGAGCTTGGGGTGGGTTGCCCCGTCCGTATGCCGTGGGGGCGGCGTACGGACGGGGCGGGGAGGGCACGGTGAGCTGCTGTCCGCCGTGCCGTGGATTCAGGGAGGCGGCGGGCCGTTCGAGGCGATCCCCCAGACCAGCGCCGACGCCATCGACAGCAGGACCGTGACGTAGGCGATCGTGCGCCAGCGGTCGTTCACGGGGTCGCCCTCGGGATCAGCTCCTCGTAGTGCTCGCACAGGGCGTTCAGGGAGTGGGCCAGGCGCAGGGCCCTGCGGTACTCGCCCTGCGGGTGCGGACCGGTGCCGAGCTTCTGGCGGGCCTCACCGATACAGGCCAGGCAGC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3296-3797 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYDT01000578.1 Streptomyces acidiscabies strain 98-49 Acid9849_contig000001.645, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3296 29 100.0 32 ............................. TGCGGTTCCAGAAGGTCTACTACCAGGCCCTC 3357 29 100.0 32 ............................. CGCTCCTTCTCGTCCGGGATCGACGCGAGGAT 3418 29 100.0 32 ............................. CGTCTTGGTCGGGGCCGTCTGCTGTCCGCGTC 3479 29 100.0 32 ............................. GTCCACCCCGATGAGCACTGCGGCCTCTACCA 3540 29 96.6 32 ...........A................. GCTCACAGGGTGGCCTTGCTGACGGAAGGCGC 3601 29 89.7 32 ...........A..G....C......... AAGGCCGCAGTCGTCGCTGAAGGTGGCGACAA 3662 29 100.0 32 ............................. GTGGCGGTCGTGACCGCCCCTGTCCTCGCCCT 3723 29 86.2 17 ..AA.................A..T.... GGAGCCTGGCTTCAGCA Deletion [3769] 3769 29 75.9 0 ...........C..C.....AA.ACC... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 94.3 30 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ACGCCTCTCGCGTCACGGGGTCCTGAGCCGTCGAGCGACCCGGCCCAGGACCCCGCCCCCGAGCAGGACCGCGCGGCGGACGCGGAACTCGCGCGCCGGCTTGGTGGTGCGGGGTGAACTCTGGTGTGTACGGGGCTGAGGTTCACGTGGGGGTGCAACCGTCCAACTGACGGCAGGGGATGGGCGGGGGCCGAGGGTCTGGGCCTCGTGCGGGGTTCGTCGCCGGTACGGGGATGGCATCCACGCGAAAGCGGCCACCGGGGGTTCGTGGGGCACGCGGGGTCAGGGGCCGGAGCACGAGTCTGGGAGCGTACGGTTCGGGACGCGTTGGGGGCGTCTCGGGGTAGGGGTTGTGCGGTATCGCGTCCGCGCGAGGTTCTGGCGGTGCACTATGAGGGGCGATGGCATCTTCAGGGAGGGACAGCGAGGGATAAATGTCCGCTTCTCTGGAAGTGACGGATTCCGGGCTGCCGGCGGAGTAAAGCATCAGGTCGGGGTCT # Right flank : TCCACCGCCAACTCCACCCCATACCCCCCCC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //