Array 1 175499-173970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAS010000003.1 Pectobacterium polaris strain NAK:226 PLAFHBKO_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 175498 28 100.0 32 ............................ AGGGGCCAGAAACGTTTTACGTTATCGACTCA 175438 28 100.0 32 ............................ AGCGCAATGGCCACACACGACAAGTGGCGCAC 175378 28 100.0 32 ............................ AGCCCGACGAACAGCACCACCCGTTCGATCTC 175318 28 100.0 32 ............................ AGATTAATAGTGCTAAGCGATGCAGGTTTCAG 175258 28 100.0 32 ............................ TTCTATGGGCCGGTTAAGGCCCACTGGTTAAT 175198 28 100.0 33 ............................ AGCCATGCGCCAGGCCAACGCGTCGCGGAATAT 175137 28 100.0 33 ............................ TATCGACCCCTTCACCGCGGCGAGGTTGTCTTA 175076 28 100.0 32 ............................ GTTACTGAGCGCGTCCGTGACTGGACTGATGC 175016 28 100.0 32 ............................ AGCGTATACAGCAACAAACATTTGTTCAAAAG 174956 28 100.0 32 ............................ CACCGATTCAGGCAAATATAAAAGTCGAGCTG 174896 28 100.0 32 ............................ ATAGCAACAATAGCCGCTGGCGTTTTACCTAC 174836 28 100.0 32 ............................ AAAATTGCCGTAGGTTTTTCGCTACCGTCAGT 174776 28 92.9 32 ...........G.T.............. ATCGCCGCGGTGCATAGCACAATAATGAAAAT 174716 28 92.9 32 ...........G.T.............. CTGAGGAATTGGCAGTACATCATACTTATTCA 174656 28 92.9 33 ...........G.T.............. AACGGCGACGCCTGCACCAATCCCCCGCAATTC 174595 28 92.9 32 ...........G.T.............. CGCGCGCGACGTTGATCATCAGTGATGGCCAA 174535 28 92.9 32 ...........G.T.............. TGTTAGCTATTAGTCGTAACTACGACGGTGTT 174475 28 92.9 32 .............T.A............ ACGGATGGCTTGCGCGAAGCGGCGGGGAGAAT 174415 28 96.4 32 .............T.............. ATGAACTCCTGTCAGATTTTTAGATTTTGGAA 174355 28 92.9 30 ...........C.T.............. AGGTCGCGGGTTTCTGCGGTTATGTCTCGG 174297 28 92.9 32 ...........C.....A.......... TCACCACGATTACCCACATTAACGAGTGCGTC 174237 28 92.9 32 ...........C.T.............. CTCAACAGCTTCAGGGCGAAATCGAGGCCACG 174177 28 96.4 32 .............T.............. TGTCAGTGCAGTCGCCTGTATACGCGCAGCAA 174117 28 92.9 32 ...........G.T.............. CCTACGCGTTGCGCCCGTTTGCCTATAAGCCT 174057 28 92.9 32 ...........C.T.............. AGTCTGCCGGATAACCTGTCTGTCGGTGGTTC 173997 28 85.7 0 ....................T...TCT. | ========== ====== ====== ====== ============================ ================================= ================== 26 28 96.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGACGGAGGTGCCGGTTCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGCTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATCGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACTATTTGATAAGAAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACGAAAGGGCGGAAAAAAAGGGTTTTTGCGACGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCAACG # Right flank : CGGATTTAAGCGCTGTTGTCTGGCTATTATTGAGGTAGCGTTGCGCCAAGTGCTCAATGCGTTTACCCCTTAAATAACGCATATTGATGACCTTCTTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGAAAAATTGTGGATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGATCGTTGACTTAAGTAAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCGGTTTTAAAAACGTTTGTGGATGATGACTATCGGTTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCAAATCCTAATGACTCCTGGAAAACGGCAATATTTGGCTGTACCGACCCCATC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 184448-185017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAS010000003.1 Pectobacterium polaris strain NAK:226 PLAFHBKO_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 184448 28 100.0 32 ............................ GAACAGCTCTTCGTACTGCTGTTGAAGATCTG 184508 28 100.0 32 ............................ TGTCAAGTACCATTCCATCGCAGCACGGAATG 184568 28 100.0 32 ............................ CGCTATCGAAATGAATGATGCGCTGCTGTCGG 184628 28 100.0 32 ............................ TATCAGATGGCGGCGGCCGTCCAGTGGTTCTA 184688 28 96.4 32 ................A........... TTCACCGCTGCGAGGTTGTCGTAATGGCGAGA 184748 28 100.0 33 ............................ TGCTTGATGTGTGGGGTAGCGTGTAGCCATGGT 184809 28 85.7 32 ...T........A..A.C.......... GGTTTGAAGCCTGCATCTGGAAACTTAACGGA 184869 28 96.4 32 .................C.......... AGACAATCCGGAAGAATTCCCATCAATGTTAA 184929 28 89.3 32 ...........CA....C.......... ATGATTTACATGTACGCAACTGAGTTAATCAC 184989 28 85.7 0 ............AC...C......C... | A [185012] ========== ====== ====== ====== ============================ ================================= ================== 10 28 95.3 32 GTTCACTGCCGTGTAGGTAGCTTAGAAA # Left flank : AGGCACTCTCTACGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGTCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTAAAGAGCAGCGCTGAACGGTTGCGCCGACGCTCCGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGTAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGCCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCCGTCGCTGGCCGTTTCTCTTCTTACGGTTTAAGCGCAGAAGCCACCGTTCCCTGGTTCTGACCCTTTTCTGGCGACCGGCTGCAACTGATTGATTTTTAATTGCGGTTGGTCGCTCTAATAAAAAAGGGGTTTTCGACAAAAAATCCATATTTTCTTTAATAATCTGGTTGTTAGTGTAAAAATTTAACG # Right flank : ATATCAGGACTTGCACTTCGCCAGACATCATCCGGTCAGACTGACCGATTATTTAACCCAATCTTCCAACGTCAGCCCCTGCACTCTTTCAAACTCTCTCAGATTATTGGTAACCAATATGGCCTTAGCGCTGATGGCATGACCAGCGATGGCCGTATCATTTGGGCCAATAGGCGTGCCTGCGGCGGCTAACGCAATTTTGATTTTCGTAGTAGCGTCTACTGCTGCGCTATCCCAAGGTAACACCGCATCGAGCCGACGACAGAAAGCATCGACTAGTTGCATATGGCGTGGCGAAGCTTTTTTTCCAACCGCCCCGAAACGCATTTCAGCGTAAGTGATGGCAGAGACCACGATCCGATCACGCCGCAATGTGCACTGCTGTAGCTTGTCAATCACCGCTGTCGGGTGTTCACGCATAATGAAGGAACATATATTGGTATCCAGCATGAACAAGCGACTCACAGTTCGAATCTCCCCTCTTCGACTACATCCTGACG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 185994-186552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAS010000003.1 Pectobacterium polaris strain NAK:226 PLAFHBKO_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 185994 28 100.0 32 ............................ AGCCAGATGGCGCGGGCTAAATTATCGATATC 186054 28 100.0 32 ............................ TGGACGAACCAATAGTTCATCCAAATCTTTTT 186114 28 100.0 32 ............................ TCAGTGACCGCACAGAGTTTCGCGGACGGATC 186174 28 100.0 32 ............................ AACTACATGCATTGCGATGCGATGCGCCGCAT 186234 28 100.0 32 ............................ AGTAAACAGCCTGCGCGTATGTCAATCGGCAG 186294 28 96.4 32 .............T.............. GCGTCAGCGGGGCGGGGCGCTGTACTGCGCGT 186354 28 96.4 32 .............T.............. CACGGCGGGCAATTAATCCCTGTTGTCAGACA 186414 28 92.9 27 ...........T.T.............. CGAAGGGGACGAGACAGCTTGCTGGCT 186469 28 89.3 29 ...........T.T...T.......... CATTGCGTAGTGCCCATAACAACACAGCG 186526 27 89.3 0 ...........T.........-....T. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.4 31 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAATGAATGCCAATTGGGTTTAACCGGACGCAGCATGATGGTATCCCCCTCACGCACGATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTATTGCCATTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCTTTCATATAAAATTCAGCCAGCCACTTACCATTTGTTATTGCTGGCTAAAACATAAGCTAAGTATAGGTATTAATCACTCGATTGTATATTCATAGCATATGCATATGCATATACCTAGCATAGGCCTATCGACATACGTTCATGACCCTTTTTTTACGCACCACCGTAACTCATTGATTTTTAATTTCGATTATCGACTCTGATAAAAAAGGGTTTTTCGGGAAAAATGTTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ACTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGGGAGCTATTCCCCGTTGAGTGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTACGATGTTCACACAGGTAAATGCCCTGCCAGGTGCCGATATTCAGGCGTCCGTTGGTGATGGGAATCATCAGGCTGTTGCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGACGGTAGTACGGTTCATTCTCCGGCACTAACCGATTAAAGAAACTCTCGAAATCTTGCCGCACCGTGGGGTCGGCATTCTCATTAATCGTTAGCGCTGCCGAGGTATGTTTGATGAACACGTGCATCAGCCCAACGTTTATCTGGCGCAGAGCGGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTGCCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATAGGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //