Array 1 3587-3991 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040463.1 Caminibacter mediatlanticus TB-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3587 36 100.0 36 .................................... GTTATTTTGTAGAGTCTATAACTATATAGACTCTAT 3659 36 100.0 39 .................................... ATCATCATCTTTCCAGATATAATCCAAGCTAATTTCTAC 3734 36 100.0 36 .................................... AGCAATCAGGTCTACATTTTCTAATAAGTCCATATT 3806 36 100.0 38 .................................... AACCCATTTCCCAACTATCTTCAACTTTTTCAATAATT 3880 36 100.0 40 .................................... ATATTTATAAAATAATTCGTTATTGAAAGTTCCTATTATA 3956 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 100.0 38 GTTACGAAACAAACGACCCGTTAAGGGGATTGAGAC # Left flank : AGATAAATAAACTTTTCAACTTTTATAATATGACACCTATCCTTTTCTAAATCAATAATTTTTGATAATTTTTTTGCAATTTCAATCGCTTCTTTTTTATTAATCAAACACTCTAACGCACTTTTTTGACCTCCAAACGCATAAGAATAAACTAATTTTTGAATTTTTCTTCTTCTTTTATTATCTACAATATCATAAGCAATCAAATACATCAAAAACTCCTTTATAAAATTTTAATAAAATTAAAAGACAAAAAAAGTCGTTAAAAAAATTTTGTATTTTTTATTTTTTTGTTATAATATAGAACAAAAAAGATGATTGAAAACTTAATGTTTTTTTAAAAAACGCCGTTTTAGATAAGATTTCTTTAAGCTTGTTTAAGCAAACTTTAAGGTTTAAAACGCCGTAATTTAGGGCACTTTAATTTTAGTGCCAATCAAAAATAAGCTCTTAAGCAAACTTTAAGAAATAGACTTCCCTAAATTTCGGGCAAAATAGCC # Right flank : CGTTTTAGTCTGTAATGTAAAATAAGGTATTCCAATATATGTTAAAATCTAAAAACCAGTTAAAAGGAAGGAGAGTTCTTAAGAAAATGTCAACTGCTTGTCGTTTTTAAGCTCGCACGAAAGGAACGATAAGTAAAAGATAACTACTTATCTTTTGACGTTCCGCACGGCAAAAGTTATGTTTTAACAACTTTACGCCTGTAATGTTCCGAAGGAACTGACAAACGCCTGAGACTTTTTCAATCGCTACCCTGCCATTTTGCCGCAAGCTGCATAAAACCTGTCCTTATAACAATTCCAAATAAGTTAGTTACTTTAAAAATCTTTAAAACTCCTATTATTTCACATTTTCCATTGTCCATTTTCAATTTTCAATTGGTATTACTTCTAACTTTTTACTATCACACTTTCCCCATTTCCTCTTTTTTGAATTATAATCTTATCTGGCATTTCACTTTGAAGCAACTCAACATGAGAGATAATTCCAATCATCTTTTCAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGAAACAAACGACCCGTTAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 465762-466167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040463.1 Caminibacter mediatlanticus TB-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 465762 36 100.0 39 .................................... GTGTTATTTCTTTAGATGAAGCAAGAATAGTTTTTGCTT 465837 36 100.0 35 .................................... TTTTTCATATTTCTTTTTTATGAAATATTTAAAAA 465908 36 100.0 40 .................................... CCTACTATGAAAGAAATGATAGCTGGAATTACAACAAAAA 465984 36 100.0 38 .................................... CTATCAATAAATCATCTTTGAACCAGATATAATCCAAG 466058 36 100.0 38 .................................... AAATAGTTATTAATTCATATAATTTTTTCTCTTGTTTA 466132 36 88.9 0 ..........G..C......T..............T | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 98.1 38 CTTACAATCCAACTGACCCGCTAAGGGGATTGAGAC # Left flank : TGGATTTAGGCATAGTGATAGGCTTTTGATATCAAAAATAATTAGATTTCATAAAAGAAAAAAGATAAAAAAAAGAGAAATTGAAAAATTTAAAAATCTTCTTCCAAAAAAAGAGATAGTAGAAAAATTATGCAATATCTTTTGGGTTGCAAAACTTATAAATATAAACCTTTCAATGCCAGATGTAAAAATTAGTAAAGAAAAAAATAAAATTATTATTGAAGGACCACATTTATATTTAGCAAAAGAGAGAAGTAAAAGTAGAGAATTGTTTTTTGATTTAGAAATAAAAAATTTGGTATAATAATAAAAAGATGATTGAAAACTTAATGTTTTTTTAAAAAATGATGTTTTAAGTAAGATTTATTTAAGTTTGTTTAAGCAATTTTTAAGGTTTAAAGTGCCGTAATTTAGGGCATTTTAATTTTAGTGCCAATCGAAAATGAGTGTTTAAGCAAACTTTAAGAAATGAACTTCCCTAAATTTAGGGTGAAATAGCC # Right flank : TAACAAACATCCATCTATATCACTTGCACCTATATAAGGTTAGACCCGATAAGGGGACTTTTAATATCAATTAACAATAAAAAAAGATGTAATACCAATTGAAATTGAAAATGGAAAATGGACAATAGAAAATTAGAAAAGATTGAAATAGTAGGAGTATTAAAGAAAGAGCTTTATAGTAACTAACTTCTATCGAATTTATGTTAAAGTTAAAAACTTGCACCAAGGCTAAATTCAAATCTTTGTAGGTCATCTCCTTTTTGGCTTTTAATTGGCCAAGCCCAAATGAAACTAAGTGGTCCCATTGGTGTTATCCAATCAATTTGGAATCCATAACTACTTCTTGTAATGTTTAATTTATTTTCACCAACTGCTCCATAATCAATAAATCCAGTTAACCAAACCCTATTTTTTAAACTTAGAGGTGTTGATATTTCAGGTCCTGTAACAAACTCATATTTTCCACCTATTAAATTACCGCTACTATCTTTTGGAGCAAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTACAATCCAACTGACCCGCTAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 1289483-1288985 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040463.1 Caminibacter mediatlanticus TB-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1289482 30 100.0 34 .............................. TTTGTTTTCTAAAACTAAATCATAGAGTCCTTTT 1289418 30 100.0 38 .............................. TTTTTTATTGCTACATTACTCATCATCCATTTTAAAAT 1289350 30 100.0 38 .............................. TTTTTTATTGCTACATTACTCATCATCCATTTTAAAAT 1289282 30 100.0 36 .............................. AGATTGGACAGTCAGTACATTAGTTTTTACCCACAA 1289216 30 100.0 37 .............................. GGTGGGAGTGGACATATACTCCTCCTGAATACATAGA 1289149 30 100.0 34 .............................. TTTTAATATTAATATTCATAATTTTTGTTATTTA 1289085 30 100.0 41 .............................. ATATTCAATGCTCTTGGTTTATTAGATAAATGGTTTAAAAA 1289014 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 8 30 100.0 37 GTTTCCAAACACTACGTGTATCGGTTAAGG # Left flank : CATTCCCTTTTCCTGTTGCACCATGGGCTACTGCCTCAGCTCCAACTTGTTTTGCTATTTCTATTTGTCTTTTTGCAATTAATGGTCTTGCAATACTTGTCCCAAGTAGATATTCTCCTTCATAAATTGCATTTGCTCTAAACATAGGAAAAACATAATCTCTAACAAACTCTTCTCTTAAATCTTCAATAAAAATATTTTCTGGCTTTACTCCAAGTTTTAGTGCTTTTTCTCTTGCTTCTTCTACTTCTTCACCTTGACCTATATCAGCAGTAAATGTTACTACTTCTGCATTATATTTATCTTGAAGCCATTTTAAAATAACACTTGTATCAAGTCCACCACTATAAGCTAATACAACTTTCATAAAGATCCTTTTTTATGAAATTATACTATTTTTTATGGAATCTTTTTTAGATATTTAGTAGTTTGTTAATATTGAGAAAATAATTATTACAGGTACTTTTTATTGATTAATTTTATTAAGTAAAAACAAAAGA # Right flank : GCATGAGATTTCGGGCTTTTTAAAAGGTTGTTGTCCTAATTTTAGGGATTTTCCAATCATTTTGAAAAAAACAATAAATTTTCAAAAATCACTTTATTTTTGCCATTATACCGAGGTTTTGAAAAAAAATCAAGAAAATGAGGTTGGAAAAATTATTTATAAAAATTTTTTAATATAATTCCAATAAAAAGGCTTACATTGAGAATTGATAAATTTTTAAATGCTGTAAATATAGTAAAAAGAAGAGCAATTGCTACTGAAATGTTAGATGAGGGAGTTGTTTTTGTTAATGGAAAGAAAGCAAAAAAAAGTAAAGAAATAAAAATTGATGATATAATAGAAATAAAATATTTAAATGGAAGTAAAAAATACAAAGTATTAAAACTTCCTGAGAGTAAAACTATTCCAAAATCAAAAAAAGATGAATATGTTAAGGAGATAAAATGAGATTTTCAAGATTATTTTGTTATACACTAAAAGAAGCACCAAAAGATGCAGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACACTACGTGTATCGGTTAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 1311943-1311242 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040463.1 Caminibacter mediatlanticus TB-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================== ================== 1311942 30 100.0 36 .............................. TATCTTTTGTTTCTATTAATGCAGTAGTTGGCATAT 1311876 30 100.0 35 .............................. GACTTCCTGTTGTATTTATTTGTAAAGCAAATATT 1311811 30 100.0 35 .............................. TTGTCAATTGCATCATTCAATGTTTTTTGTGCTCC 1311746 30 100.0 35 .............................. GATGGAGCGAGTGTGCAAGGGAAAGTGCAGTGAAT 1311681 30 100.0 35 .............................. TTGTCAATTGCATCATTCAATGTTTTTTGTGCTCC 1311616 30 100.0 35 .............................. TTAGTATGTTCTAAAATAAATTTTAATCTATCTAT 1311551 30 83.3 37 ........A....G........A.TT.... TTACGATTTCTCCTAAATTAACACTATTAGCAAACTC 1311484 30 80.0 35 A..C......A...T.......A.T..... TTAAATGGATTATCAAAATCTTCCCAAATAGATTG 1311419 30 83.3 35 A..C......A..............T...T TGGTTCTTCTCTATCTGTTTAGTATTTAATAATCA 1311354 30 70.0 53 ......T.A.....A.C.C.T...TT...T TTATTTTTAATTTTATTTTCATTTTAACTCCTTGTATAATAAATTTCCTTTAT 1311271 30 83.3 0 ......T.A..GT..A.............. | ========== ====== ====== ====== ============================== ===================================================== ================== 11 30 90.9 37 CTTTAACCGATACACGTAGTGTTTGGAAAC # Left flank : AATAATAAACGATACTGAATTTATGCCTTTTTTGATTAAGGAGAAAAGATGAAAAAAGATTATAACTTTAATTATGTTTTTTTAATGTATGATATTGCAGATGAAGAGAGTGAGAGTGGCAAAAATAGAGTAAGTAAAGTATTTAAAATTTGTAAAAAATATCTCTCACATCATCAAAAATCAGTTTTTAGAGGTGAGATTACTCCATCAAAACTTTTAAAACTTCAAAAAGAACTTGAAAAAGTTATCGATAAAGAGCTTGATTTTATAAGCATAATAAAATTGAAAAACAAATCATCTTTTTTAGAAACTACATTAGGCAATAAAGACAACGATTTATTTTTATAATTTTTCCAACCTCATTTTCTTGATTTTTTTTCTAAACCTCGATATAATGGCAAAAGCAAAATGATTTTTGAAAATTTATTATTTTTTAAAAAATGATTGGAAAATCCCTAAAATTAGGACACCAACCTTTTAAAAAGCCCGAAATCTCATGC # Right flank : GAAATATTTAATTCTTTTTTAAGTCTTTCAGTTAACTTCAACCAATATAGTAAGTATATTTTTATTATTAGTCCCTCACATATACCTAATCTTTGATATAATTTTCAAAAAAGGCTTTTTTTGAGAGTTGAAATTAATAAAGAAAGTTATAAGAAGCTTCAAAGAAGATTTCCTTGGGTTTATAAAAATGAGATAGTAAATTTTCCTGAATGTAATGCTGGGGATATTGTAGATTTGGTATATAGAGATGAATATGTAGCTACTGCATTTTTTAATCCTTTAAGTAAAATTTCTGCAAGAGTTATTAGTTTTGAAAAAGAAAAAATTAATAAAGATTTTTTTAAAAAAAGAATTGAGAAGGCTATTAAAAAAAGAGAAAATATACCCTCAAACTCATATCGATTAATTCACTCAGAAGCTGATTTACTGCCTGGTCTTATTGTTGATAAGTATGGAGATAATTTGGTTGTGAGTTTTACAACTGCTGGGATGGATAATTT # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCGATACACGTAGTGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 5 1323826-1324513 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040463.1 Caminibacter mediatlanticus TB-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1323826 30 96.7 35 ................C............. CATAAAACAATATAATTAACTTGATTAGTAAAATG 1323891 30 100.0 36 .............................. ATCATAGCAATTGATGCTAACTCTTTTTCAGTGTTT 1323957 30 100.0 35 .............................. TAAATATTAGGCATTTCTATTCCTTTTTTATAAAA 1324022 30 100.0 36 .............................. TTTAAAGTTGCCATATTAGCTCCTCTTAGCCTTCGT 1324088 30 100.0 36 .............................. TTATACCCTTATTGTACAAATGTTAAAAAATATGTT 1324154 30 100.0 36 .............................. TCGTAATTTAATATATTTTTTGTTAAATTATTTCTT 1324220 30 100.0 37 .............................. TTATCTAGTTTAGGTTCTAGGTAATCGAATAACGCAT 1324287 30 100.0 37 .............................. TTTTTATCATCTTTAAATAAAGAATAATTTAAAATAA 1324354 30 100.0 34 .............................. TAGATTGTATGGATGGTAATGTTAAGAAAAAGTC 1324418 30 100.0 36 .............................. AGCATTTAATCTACTGCCTTTTTGTAATCTTAATTT 1324484 30 76.7 0 C.....G.A......A.T.......T...A | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 97.6 36 ATTCAACCGATACACGTAGTGTTTGGAAAC # Left flank : AATTTTACTTCTCTAAATTTAATACCCTCAACTCTTAAAAACTTATCTTCCCACATAATACTACTAACAAGCAAATCAATATATTTTTTATCAAAACTTCTAAAAATAAAATTAGTTTTACCCTCATAATATCCGTCTTTTGGATTATTAAAATTTGAAAAAACATACTTAAATTTATTTTCAAGATGTGAAGTGTCACCTTTACTCATAAAATATGAAGCTAAAAATTTCGATATCACTTCAAGTGAAGACTTATGATAAATTCTATGCTTTAATTCAACATCAATTTTTAATTCAAAATATCTCATTTGACCCCTTTTTCGTTAAAACATTTTAACATATTATTAATTTTTTCCAACCTACTTTTCTTGATTTTTTTTCTAAACCTCGATATAATGGCAAAAGCAAAGTGATTTTTGAAAATTTATTGTTTTTTAGAAATGGTTGGAAAATCCCTAAAATTAGGACACCAATCTTTTAAAAAGCCCAAAATCTTATGT # Right flank : ATCGAATTTTTTTCTTTACATAAATAATCTATATACCTTTAATCAACACGTAAAATAAAAGTATAAGAGTATAAGAAAAATAGAAAATATGAATAAATTTTGATAGATTATAAAAAAATATTTAAAAAAAATCACTCTAAAAGCTTACTTCCAGTAGTAATATAATATTCTGCATTTTTTATTATTTTTTGCCCTTGTGTAAAATCAAATTCTGGTAATATTTCTAATTCTCCTTCAAATTTTTGATTATTAAATTTTAAATAGTTTTTAAGTGGATTTTTATAATTATTGGTTTGATAAATTCCTTTTATAAGGTTGCAGTTATAATTTTTCTCTTTAATACTTTCCAATTTCATCAATCCAAATCCATATCTTACATCACCACCAATATATATCTTTTTTATTTCATCTAAATACTCTTTTTTGCAGTTTATATATCCAACCCACTCTCCAACCCACTCTATATTATTTGGATATATTAAATCTATCTCATGTAAACT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAACCGATACACGTAGTGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 6 1331861-1332943 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040463.1 Caminibacter mediatlanticus TB-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1331861 29 100.0 37 ............................. AATAATCAATAATATCTTTATAAAAAAATTTAAGAAC 1331927 29 100.0 36 ............................. GCAGTAGCTACAGCATTACCCAGTATGTCAGCATCC 1331992 29 100.0 37 ............................. ACTTCTTTGCTGTTGGAGAGATACTTTCTTTCTTCAC 1332058 29 100.0 37 ............................. AATTATCTACTAAACTTACTAAAAAGAGTCTGTTTTC 1332124 29 100.0 37 ............................. TTTAAAAACTTATTTGCTTCTATGCACTCTTTTAATC 1332190 29 100.0 41 ............................. TTTCATATAAACGTTTATAATCTATATTATAAACATTAAAC 1332260 29 100.0 39 ............................. TTGCTGTTGCAGGAAAGTTTATTATCTTTTTTTCCCAAC 1332328 29 100.0 36 ............................. GAATATAGCTTATATTGATTCGTTGTACCTATTGTC 1332393 29 100.0 37 ............................. GTGTTATTTGATGGTATAGGTTTAAATAAAGAAATCC 1332459 29 100.0 36 ............................. TTATCATAATTATCTATAATTTCTCTTTTATTTAAC 1332524 29 100.0 36 ............................. GTGGAAGCATAAGGTAAAAGGAATAGGTCATTAGCA 1332589 29 93.1 36 ..C............C............. GCAATATAATTATCTGCAAACAATAAAACACTTAGA 1332654 29 93.1 35 ..C............C............. AGCTGATAAAGAAGCAAGAAAAAAAGAGATTGACA 1332718 29 93.1 37 ..C............C............. CCTAATGGACTTTGATACACATTTATTGGTTGCAGCA 1332784 29 89.7 37 ..C...A........C............. AGAAAAGGTAACATTTTCTTGATAGGTGTCTTATCTA 1332850 29 93.1 36 ..C............C............. GTAACTTTTGCATAATAATTTGCGGTTGTTTGAATA 1332915 29 79.3 0 ..C.....................ATTTT | ========== ====== ====== ====== ============================= ========================================= ================== 17 29 96.6 37 TTTAACCGATACACGTAGTGTTTGGAAAC # Left flank : AAAAATTTTAGAAGTTGTAGTAAGAGGTAAATTTTTTATAATGTACTCTTCTATATCTGATATTTCTTTATCTTTATATTTATATTTTTCAAAAGTTTTGTTTCGAATTTTTTCAAAAGTTTTATAATCTAAACTTTCATTCTCTTTTACTTCAATACCTGCAAAATAGCAATATACTTCAAACCAAAATCTTAAACTTCCAAATATTGAAGCTGGTTTAAGCTCTGTACATTCTCCATTTATATCACCTGTCCATAAAGGTGTAACTGTTTCAAATGTAACTGTTAATTCTTTTTTACCCATTTTATCATCCTTTCCTGATACCTAATTTTAACAAATTGTTAATATTTTTCCAACCTCATTTTCTTGATTTTTTTTCTAAACCTCGATATAATGGCAAAAGTAAAGTGATTTTTGAAAATTTATTGTTTTTTTAAAGACGGTTGGAAAATCCCTAAATTTCGGACACAAACTTTTAAAAAAGCCCGAAATCTCATGCC # Right flank : TCAAACCTATGTATTTTTTAAGAATATTTAGTTTTTTTATAAATTAAAAATATCTGTCACTTTTATAATCAAAGAGACAAGTTTTTATTCAAATTAAAATTAAAAAAAATATATAAATTTCTAAAGTTTTAAAAAAAATTACCGATTATTTTTTGAAACCAAAAAAGGAGCTTAAAATGGGTTGTTAAACTTTTAAATATTTCCCCTCTTTTTTAACATAATCAATTAAATGTTGATAGGTTTGGTTAGTAGAAAGTGTTTTAGCATCCCCGACAATAATTAGCTTTCTTTTTGGTCTTGTGATAGCGACATTTAATCTTCTTATATCATCTAAAAATCCTATATTTTCTTTTTCATTAGCCCTAACAAGACTAACAATTATTATCTCTTTTTCTCTACCTTGAAAACCATCAACTGATTTTATTTCTATTCCTTCTATTTTTTCATTTTCCATTAATTTTTTTATATATTCTTCGTGGTCTTTATATGGAGTAATAACA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAACCGATACACGTAGTGTTTGGAAAC # Alternate repeat : TTCAACCGATACACGCAGTGTTTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 7 1668030-1668350 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040463.1 Caminibacter mediatlanticus TB-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1668030 36 100.0 33 .................................... GATATTCTAATATTTTATTAACTTTTTTTAATG 1668099 36 100.0 34 .................................... TTTGTAATCACAATCCAATTTGTATTTTTATCTA 1668169 36 100.0 39 .................................... CTCTTAAATAGTGGTATTTGTTAAAAGGTAATCCCTTTT 1668244 36 100.0 36 .................................... TTAATAAATCCATAAGCTTTATATTTTTCGAATACA 1668316 35 88.9 0 .........................A...-G....G | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 97.8 36 ATTACAATCCAAACGACCCGTTAAGGGGATTGAGAC # Left flank : TAAAAGATGGATGATGTTTTTAAGATGGATGGTGAGAGATAGTGATATTGATTTAGGATTATGGAAAGGTATTAAAAAAAGTAATTTAATTATCCCACTTGATACCCATACTCATAAAACTTCATTAAAATTAGGTCTAATAAATAGAAAAAGCTATGATTTGCAAGCAGCAATTGAACTTACAAATAAATTAAAAGAATTTGATAAAAAAGACCCTTTAAAATATGATTTTGTTTTATATAGAATTGGACAATTTAAATTACTTTCTTAAAATATTTATTTTTTGATATAATTATTGTTATAATTCTAAAAAGATGATTGAAAACTTAATGTTTTATTAAAAAATAACCATTTAGGTAAGATTTCTTTAAGTTTGTTTAAGCAAACTTTAAGCTTTAAAATGCCGTATTTTAGGGCATTTTAATTTTAGTGCCAATCAAAAATAAGCTCTTAAGCAAACTTTAAGAAATAAACTTCCCTAAATTTCGGGAAAAATAACT # Right flank : GCCGTTAAGAAAACGACAACTGCTTATCGTTTTTAGGCTCACATGGCAATGTCGATGTTCCGAAGGAACCGACAGACGCTTGAGACTTTTTCAACCGGCACTCTGCCAGGTTTTGCCACAAGCGGCATAAAACCTGTCTTCACTTTGGCCGAAAGCAAAGCAGTTTAATTTGTAGCTTAGACTATCTCGTTCATTATAGTGTTTGACACCAAATATAAAAAATTTTTATACGAATCTTTACATACATAAGCTATTTACTATTTAATAAGTGTCAAAGACTTAATTAGGATAAAATGAAAAAGACAAGAAATTAGCCTTGTCTTTCTTTAATAATTTCTTCTGCAATATTGTTTGGAACTTCTTCGTAGTGATCAAATACCATTGAATAAGTACCTCTACCTTGAGTCATACTTCTAAGGTCTGTTGAGTATCCAAACATTTCAGCAAGTGGAACAAATGCTGTAATTTTTTTAACTCCGTGTTGGTCTTCCATTGAATTT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAATCCAAACGACCCGTTAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 8 1676587-1676928 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040463.1 Caminibacter mediatlanticus TB-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1676587 36 100.0 46 .................................... CTCGTCCCAATATAATACATATTTACTCATTCTCAATCCTTTCTTT 1676669 36 97.2 39 ........T........................... TAACCCTTCTTTTAAAATTGCTATTCCATTTTTATTTTT 1676744 36 100.0 41 .................................... TCTTTATAAGCCCTAATAATATCACTAGAAAAATTATTGTC 1676821 36 100.0 37 .................................... TGAATATATTCTCCATATTTGTCGGCTATACTTATTT 1676894 35 94.4 0 ..............................-G.... | ========== ====== ====== ====== ==================================== ============================================== ================== 5 36 98.3 41 ACAAATTACATAACAGACCCGTTAAGGGGATTGAGA # Left flank : TAATAATTCATCTGATAACTTTTTTACATCAATATCTATTTTATCTGTTTTAAGATAAATTTTAATATTTTGAGGGCTAAAAATATCTTCAAATCTTTCTTTAAACACTAAATCCATTTTCCAACTTTTTTTGACTATTTTTTGTAAATTTTAACATTTTTTGTTAGAAAATCAATGTTTTTTTTATATTGATTAATGCATTTTCCAATTTTTCATTTTCTTGATTTCTAAAAGTCCCATAAATTCGGTATTATAAAACTTAAATTTTCCTTAAAGTTGGAAAATAGATTCTTTTTTGCATTTTTTACATTTATTTTCTAACTTTTACATTTTTAAAAATCCCTAAATTTAGGGGCTTTAAGCTAAATTTAAGCAAAAATAAACGTTTTTTAAAACTTTATTTTCCAACATTTTCCAACTTTTTTGACATTTCCCATAATTTAGGCTATACTTTCTTTAACAAAATGCTCTTTGAAAACTCAAATGTCGATTTTTGGGCT # Right flank : AGCCGTTAAGAAAACGACAACTGCTTGTCGTTTTTAGGCTCGCACGACGCTTGTGATGTTCGCTTGCGAACCACAAGACGGCAGAGACTTTTTCAATTGGTACCCTGCCAGGTTTTGCCGCAAGCGGCATAAAACCTGTCCTCACTTCGGTCGGAAGCAAAGCAGTTTGCTTCCTAACCTTCGGTTACCTCGTTCGCCCGTTAAGGGGATTGAGACTTTCTTTTGACCTCTTTTTTATTTCCCCCTCATCAGGGATTGAACAAATTACATAACAGACCCTAATAAGGGAAGGAGATCCGTTAAGAAAACGACAACTGCTTGTCGTTTTTAGGCTCAGAGGAGGGATATTAAAAGACATATTTTAACAATTTTACATCTAAGATTTTTCAGAGAAATCGAGATACTAATAATAAATCTAATTAGAATCAGAAAAAATTAAAATTTCCTAATAAGAAAAATTATGTAAGATATACAATAAAAACAATAATTATAAAGATATT # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAAATTACATAACAGACCCGTTAAGGGGATTGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //