Array 1 63323-66362 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVZB01000004.1 Phocaeicola dorei strain BIOML-A5 scaffold4_size378023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 63323 47 97.9 29 ...A........................................... GATTTAAAACCTTAACACCACCAATCATA 63399 47 100.0 30 ............................................... GTGTGTACATTCAGTTATTCCCAGGGTGAA 63476 47 100.0 30 ............................................... CATCTATTAGTACAATGGCGGTAGTTATAA 63553 47 100.0 29 ............................................... AGGTTCGACAAATTGATTTTCCTCTTTAA 63629 47 100.0 30 ............................................... AATTAGTCTTGCCTTGACGCACCTGCGTGC 63706 47 100.0 30 ............................................... AATCTGCGCATAGACATCTTCACCTTCATC 63783 47 100.0 30 ............................................... CTCCGGCGTATATTTCATACTCTTTTATCT 63860 47 100.0 30 ............................................... ATTACGTCTTTCATTACTTTGTCTTGATTA 63937 47 100.0 30 ............................................... TTTTCTTTTCCTCCTCTTTCTTTGGTTATA 64014 47 100.0 29 ............................................... CCAAGGCTACAGGATGTGGAAAGGCTCCT 64090 47 100.0 30 ............................................... CCCCAGCTCTGATTTTAGGTTAGAATCACG 64167 47 100.0 30 ............................................... GGAGAATGTTCGTAAACTCACTCTCTCCGC 64244 47 100.0 30 ............................................... ATGGGAAGAACCGCTTAAACAGGCTGGCAG 64321 47 100.0 29 ............................................... AAAATAATTGAGAATCTTCCCGATGATTA 64397 47 100.0 30 ............................................... GAAATGATTGAACTGATTGATGCGTCTAGT 64474 47 100.0 30 ............................................... AATCCACCGAAATCTATTCCTTCTGATACA 64551 47 100.0 30 ............................................... ACCAGTGGTTTACTGATGGTGACTTATGGT 64628 47 100.0 30 ............................................... CAACCAAAGAAGTACCTCCATTGGGGTTAT 64705 47 100.0 30 ............................................... CAAATACGTGTACAAAAGAACAACAATATT 64782 47 100.0 29 ............................................... TACGTATAATCTTTATATATTTGTGAAAT 64858 47 100.0 30 ............................................... CCATATTGGAAATTCTCATTTTCCAATCTA 64935 47 100.0 30 ............................................... ACTTTCAATCCCTTGTTACGCAAGAATGCG 65012 47 100.0 30 ............................................... TCGCCATTTCGCATCCTTCGGCTGGTACAT 65089 47 100.0 30 ............................................... AAAAATCCAAGAGACGCTCTTTGTCGGGGT 65166 47 100.0 30 ............................................... ACGGATTGCCTTCCTTCAACTCAGGAACAT 65243 47 100.0 29 ............................................... TTATCAATTTTCTGACCCAGAGTTTGAGC 65319 47 100.0 30 ............................................... TCGCCATTTCGCATCCTTCGGTTGGTAGAT 65396 47 100.0 29 ............................................... ATTAAGAACATCTTCAAGAGACTGAAGAC 65472 47 100.0 29 ............................................... CTTCAACTCAGGAACATACGAGTCTCTTT 65548 47 100.0 30 ............................................... TAGTTAAAGCGCCTTGTTGAACTAGGTTAT 65625 47 100.0 30 ............................................... TCTTCTCATATTCTATACCTGTTTTAAGGA 65702 47 100.0 30 ............................................... TATCATCCTTTTTGGCGCTGTTGCAACAGC 65779 47 100.0 30 ............................................... AATTAAAAATTAATAGATTAAACCATCTGA 65856 47 100.0 29 ............................................... ATCTGAGTAAACGCTTGTGGCAGAGCGCG 65932 47 100.0 29 ............................................... TCCCATTGAGATTCAGAGAAGAAATCATA 66008 47 100.0 30 ............................................... AGCAGCAGAAATAGCACCAATTACAATTTT 66085 47 100.0 30 ............................................... CGGACCAAACGATATATGAATAAAACTAGG 66162 47 100.0 30 ............................................... ACTATTGTCCGGAAGCAATGTACCAGCTTA 66239 47 100.0 30 ............................................... TTCAGTGGGCAAAATATGGACTAACATTCA 66316 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 40 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAACTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CAGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //