Array 1 42-1004 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMB01000037.1 Methanobrevibacter smithii TS96A Contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 42 31 100.0 37 ............................... ACAGTTCCCAATTATGTTATTAATTCATTTTTATTGT 110 31 100.0 34 ............................... AGCAATAGACAATGGAGAATTTGATAATAAATTC 175 31 100.0 38 ............................... AGGATTATGGGTTGGATTGATACTAACACTAATTTTAA 244 31 100.0 38 ............................... TGTTCCTTATTATTTGATTAAATACCATTTTTAACACT 313 31 100.0 33 ............................... CATTATATGCAATGAGTGGAGGATTTTATGCTG 377 31 100.0 35 ............................... GTAGGAAACCACGTACGTGCACGTACGTACGTACG 443 31 100.0 35 ............................... AACATAAACTACAAACATTACTATCTTCAGCAGTT 509 31 100.0 34 ............................... CAATACTTGTAGTGTGACTCATATGCTTCACACA 574 31 100.0 34 ............................... TCAACCCCCTGAAATTTTTTCATTTCAGAAGGAG 639 31 100.0 36 ............................... TTGTATTCGTTTAGCACTCCATCGAAATCCACACAT 706 31 100.0 37 ............................... CATCTTGCTTATCAGGAAGTAAGGTTCACCACAACAG 774 31 100.0 35 ............................... AAGGATAATCCTGATACTCTGAAAGGATTTGCTTT 840 31 100.0 36 ............................... TTCAAAACTCTTGGGACAACTTCTCTGCAGAGTATA 907 31 100.0 36 ............................... GTACTTCACCGGACTCCATGCCTTCAGACCATTCCA 974 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 15 31 100.0 36 GTTAGAAATAAGACTATAATAGGATTGAAAT # Left flank : GATTGAAATATGTTCGTGAGTTTGAAATAATTTTGATCTGCG # Right flank : TTCATTTTGCACCTATTGATATATAAATTTAATGATGGTTAGAAATAAGGCACTGTCAATAACTTTGGTGATGAATGCCTCGGAAGTTTCTCTGCACCCAGTATTTGGTTTTGAGAGAAAATCTTGTCCTAGCTCCTTCAAAAGTTCTTAATGTTTTTTTAATATGCTTAGGGAAAACTTTTTGAAAGAAATTTTCAATTTTATTACTTGTAGTTGGAACATTACTATTTTCAAGATGAAATGTTATTGTTTTAAAGTAAGGAATGATGAAAAACCACAATAAATTAAAAATAACTTTCGGCAAATTGTTTTGTATACTAATAAGATAATCTCTACCTTTTTTAGCAGATTCTAAATCATTAGCATCTAAAACATCAAAAACTAATTGTTTACAATAATTTAAGTATTCCAATTCTTCATCAGAATAATTATTTCTTTTCTTATTCTCCCTAATGTTCCTGTTTATCTTTTGTTTTGTGTGAAACATACAGAATTGATGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAATAAGACTATAATAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 531-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMB01000045.1 Methanobrevibacter smithii TS96A Contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 530 31 100.0 36 ............................... ATGTCAATGTCAAATCCTTCAACGTACATTGTTTGC 463 31 100.0 35 ............................... GTATGGGGTTTATGATATTGAATTTGTTGATGGTG 397 31 100.0 36 ............................... ATCCGTTTAATTAAACAAACATCACCAATCGACCGA 330 31 100.0 38 ............................... TACAACAACAGATACACTGAAGATGACTATCATTACAT 261 31 100.0 37 ............................... AAAAATAAATAATTAATTCATCTAAAGTATACTTTTT 193 31 100.0 36 ............................... CACATATATCCTCTATCAAAAGGATATTATATGCTC 126 31 100.0 33 ............................... TCTAAAAATAAAGGTTATTGAAGATTTTTAGGT 62 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 8 31 100.0 36 GTTAGAAATAAGACTATAATAGGATTGAAAT # Left flank : GGTTATGGAAATGTTTCTAATTCTTTAGTTGTTGGTAATAAGACTGCTGGTGTTAATGTGACTGTTCCTGAGATTATTCCTGATAAAACAGTTAATGTTGCTAATCCTAATTTCGGTGATAATGTGACTTATACTGTTACTGTTTCTAATGATGGTATTGGTGATGCAAACAATGTTGTTATTGTTGATAGGCTTGGTGAAGGTTTGACCTTTGTAAGTGCTTCTGATAATGGTGTTTGGGATCCTGTTAAACGTACTGTTACTTGGATTGTTGATTTGGCTAAAGGAGAAAGTAGAACTTTCTATGTAAATGCTACTTAGCC # Right flank : TCTTTAAAACTTGGGTTAATGATACTAAGGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAATAAGACTATAATAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 1-4027 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMB01000030.1 Methanobrevibacter smithii TS96A Contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1 37 100.0 35 ..................................... TTCCTAACGAATGGCAATCCGTATGTAACTTCGTT 73 37 100.0 35 ..................................... TTTCTAAGCATTTTTAGAAATGCTTGTTTTTTTGA 145 37 100.0 38 ..................................... TTGTTCTTCGTATTGACTTATGATTTCAGCTATTTCAT 220 37 100.0 35 ..................................... GTCCTTGAAACTTTTTCAACATTTTTATAAATCTT 292 37 100.0 36 ..................................... GATTTATCCCATGTATGATTATTGGTGCTTATTACA 365 37 100.0 36 ..................................... TTCGTTTTGATTGAATTTTTCATTAATCATTTATAA 438 37 100.0 37 ..................................... CTTTTAAATTCATAATTAACACCTTAACGGGCTACAA 512 37 100.0 36 ..................................... TAATTTTATCTTCTTTATTGATTTTCTCTTGTCTGT 585 37 100.0 35 ..................................... CAATTTGCTAAAACACTATCAGTGTGTTTAAACGT 657 37 100.0 37 ..................................... TTTTGGCTATTTTAAAGCCTAATTTTATTGCATTTTC 731 37 100.0 34 ..................................... TTTTTCTAAAACAATTTCTTTATTATTGTTAATG 802 37 100.0 38 ..................................... TATCTATTAATCTATTAGATAGACCGGCTTTATTACAA 877 37 100.0 36 ..................................... ACATTTCCTCCATGCGATTGCTTAATTCTTCTCTTT 950 37 100.0 36 ..................................... TTTGTAAAATTCTTCTTTTAACATTTTACTGCCTCT 1023 37 100.0 36 ..................................... TATTCAGTATCTGGAATTTCTTCGTCCAAATACTTT 1096 37 100.0 35 ..................................... TTTATTCCTCCCAAAATTCCTCATTAAGTTTATAA 1168 37 100.0 35 ..................................... TAATGTTTTAGTAATTATATCTTGTTCCATACTTA 1240 37 100.0 37 ..................................... TTTGTAAAAATTCTTCTTTTAACATTTTACTGCCTCT 1314 37 100.0 36 ..................................... TCCCTTACGGATATTATTTAGTTCCTTTCTTTCTTT 1387 37 100.0 36 ..................................... ATTTGTGGGCTGTTATATCCCCTGCAATCTATATAG 1460 37 100.0 36 ..................................... TCCAAGAGCTTTATTTGTCCTACTGAATGTGTTAAC 1533 37 100.0 34 ..................................... AATTTTAAAATTTAAATCCATTTTATCACCTTAA 1604 37 100.0 35 ..................................... TAGGTTCTTCGTCTAGATACTTTTTGCTTAAATAA 1676 37 100.0 35 ..................................... AAGTCTATCTGTTTTTATAGACTTTTTTTCTAGTA 1748 37 100.0 35 ..................................... CGATATCTATTACTCTGGTGATGGAGTAGTGGGTT 1820 37 100.0 38 ..................................... TTTTATTGATTTGAAATTTTGAAACATTTTTTCACCAT 1895 37 100.0 34 ..................................... AGATATCTTGTGTTAAGTCTGGGCCTACTTCGTA 1966 37 100.0 38 ..................................... GTATCATATGCTATTATAGCATCTGATCTGCTTTTTCT 2041 37 100.0 34 ..................................... ATATTGTCACGAACTTTGATGCTTTTGTATTTTT 2112 37 100.0 35 ..................................... TACATACTTGGTCATTCTTATGGATTTAAAATCTT 2184 37 100.0 35 ..................................... CGGCGTCGCTTATTTCGTTATCTAAGTATTTTTTG 2256 37 100.0 36 ..................................... TGTTTAAAAACTATAATTTTGAACATTGTAGGACCT 2329 37 100.0 36 ..................................... TTGTCAAATGACTCATTTATTTTTTCTTTTGAGTCT 2402 37 100.0 34 ..................................... GAGGTTTTTAAACCTTTCCGTTCTTTATTTTTGT 2473 37 100.0 36 ..................................... TTTGCACCCTACAATGTCCTTGAATACACTCTGGGC 2546 37 100.0 36 ..................................... ACTTTTAATAGCTATTTAAAAGCTCAATAATCCGTA 2619 37 100.0 35 ..................................... AAAACTGATTTCGATAACTCCTAATCCTTCTATGT 2691 37 100.0 34 ..................................... AAAAAGTGGATTCGGGATCCTACAAGCACACTTT 2762 37 100.0 35 ..................................... TCATCTGTTTTTAACAGATGATACTTATTTATTAT 2834 37 100.0 34 ..................................... CTGTGGAAGTTGAGCCTTTTTGCGACCCAGAGTT 2905 37 100.0 35 ..................................... TTGACAGTTTATATCAGTTAAAGGCATACTACACT 2977 37 100.0 33 ..................................... ATAAGTATTAATATTATCCCTTTTAACGGTATT 3047 37 100.0 35 ..................................... GTAATTCGTACATTTTATTCACCTATTAATTTTTG 3119 37 100.0 35 ..................................... CATCGAAGTCTAATTCTTCGAGAGTGTCGAGATAG 3191 37 100.0 36 ..................................... TTATCGTGTTTTAAATTAAAGTCCTCAAGTTGTCCG 3264 37 100.0 34 ..................................... TTAAAATCAACAATTCTTAAAAAACCACTTCTAA 3335 37 100.0 36 ..................................... TTGTAATACATTTAATAATGTTTTCTTCGTCTATAA 3408 37 100.0 35 ..................................... TTAATTAATTCGTTATAAGCTTGTCCACTTGATTT 3480 37 100.0 37 ..................................... TTGCCCTTCAAATTCTATAAAGTTCGCATTTGCTAAT 3554 37 100.0 36 ..................................... AATATCTATTACATCAGTACTAATAAATTGTTTTAT 3627 37 100.0 36 ..................................... GCTTGTTGCCGTTTTTGTTGCCGTTTTTGTTTCTGA 3700 37 94.6 37 ..........T.......T.................. GCATTAAATGTTGCAAATAACTCTGGCATTTGCTTAT 3774 37 100.0 35 ..................................... TGCAGATTTTACTCTGCTTAATTTGTTGCTCATAT 3846 37 100.0 35 ..................................... TATTCTACCATTCTTGGTATTTGTTTTTCGTTGTA 3918 37 94.6 36 ..........T.......T.................. TATTGGACTCTTATATCTGTGCCTGGTAGAGTACGT 3991 37 94.6 0 ..........T.......T.................. | ========== ====== ====== ====== ===================================== ====================================== ================== 56 37 99.7 36 ATTGCAGAAAACCATCTACTAAAATAAGGATTGTGAC # Left flank : | # Right flank : CATATCATTATATGTAGTAATAAATTCTCTAAATGGTATTTCAAAAAAAACTATCTACTAAAACAAGGCTTAAATGAGTTTTTATCATAATCAACTATTTCCAGTTGATTTTTATAAAGTGAATTCTAAAAAGATTATTAACAAATTGTTGCAGTGTTATATATGAATGTTGAAAGTTTGCAAATCATTTCTAAATTTATGAATGATTATGAATATGAAAAAGCTATGGAATTATGTGATGAGCTTTTAAAAAAAGATAATGAAAACAGCCATCTTTGGGCTTTAAAAGGATGCTGTTTAAATCATTTTGAAAAATATGTTGAAGCAATGGAGTGTTACAACAGATCCCTAAGCGTGGATGATGAAAACCCTTTTATCTGGTTTCATGTGGGTAAAATTTTAATGGAATATGATTTATTTGATGATGCTATGGAGTGCTTTAACAATTCATTGGAAATTAATCCTGCTGATGATATGGCACTGTATTCAAAAGGGGAGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAGAAAACCATCTACTAAAATAAGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //