Array 1 259611-259953 **** Predicted by CRISPRDetect 2.4 *** >NC_015571.1 Porphyromonas gingivalis TDC60, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 259611 37 100.0 43 ..................................... CCAAAACTGCTAAGGCTGCAGCTCAGAATGCACTAGACCAGTT 259691 37 100.0 39 ..................................... TATAGTTCAAGCTTCTGATACAGACTTGATTGAAGAAGA 259767 37 100.0 41 ..................................... CGGGAGTGCGACAAGATACTTGGCTCCGGCCGCACGATTGG 259845 37 100.0 35 ..................................... CGTATATCCGGCATTAGTAGGAGAGGTTATGATAA 259917 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 5 37 100.0 40 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : TACGAGCCTGTCCCCCGAAAACGACCGAACTTTCCTTTACGGACAAATCCGCCTCTTGGAAGTTCACAGACCGGAAATGCTCGGATTGCGGAGCGTGTTTTCGGGAAAAGCGGCGCGAGAATTTTTTCGCTGTGGCGCGAGAATTTTTCACTTCCCGAACCAAAACGAAAAAGTTCCCGCGCCACGTTTTTCAGAGCATCGATAGTCTTCTCCAAAGAGTCCGTTATCCACTTTTATAAGACCGCTACACAACTCGCTTGTGCGTTTGGCATCCTCGTAGATGTGTGAATACGAAGGATGTTTTGAGTTGTTTGCTGTTGTTTTTCTATCGGTTGGACTCTCCCTTTACTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGATTTTTCGTCTATTTCACGCCATAGAGCACAGAAGCCCGGGCATACGCTTAAGATTGTAGGCCATCGCTTCCAGAACACTCTGTGTATGCATTCGTTCTAACCCTCGGTAATCAGT # Right flank : GTACTTGAGCGACTGCAAGTTACGAATAATCCCAAACGTAACGCATTGGCAGAGAACGATTCTATTTTTTTCGAAAATACAAGTTGAGAAATGCAGCTATAACACTATTTTTGCAGTTGAGCTGATTATATCTCATTGATATACAATCAAATTACCTGATTTTCCGTTTTCGAAAATAAGAAAGAGGGAGCCTTCGTTTTTTAGATTTTCGAAAAAGAGAGAAAGACACCGTTTGATAATCAAACACTTACAAATAGCGAAAAGCCTCTATTTTTCGAAAATAAAAGTCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACAGGAGAAAAGAGTTGTTCTTGCAACCGACTGATAATCAATACGTCAAAGAGCGATATGTGATTCGATTTTTTTCGAAAAACTAAACCACTATACTTTTCCTTTTTCTCCGGCTCTTAGGGAGGGTCGGATGTCCGCTCATCCAAGCAGCGGTGTAACAATGCTGACAGAGAGGAAGAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 293621-294703 **** Predicted by CRISPRDetect 2.4 *** >NC_015571.1 Porphyromonas gingivalis TDC60, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 293621 30 96.7 36 A............................. GGGGATGAGCGGCGATGGCTTAATCGGGCGTCTGTT 293687 30 100.0 37 .............................. TTGCATACCGACCTCTTCCAACGAGCCTGCATCGCTC 293754 30 100.0 37 .............................. TTCCAGCCTGCAGACGACAAAGCAGGCGCCTCGAAGG 293821 30 100.0 36 .............................. GGCGTACCCCCTATGACAGCTACCCGGCTACTCATC 293887 30 100.0 37 .............................. GATAACTGGTTCGAGGAGTACGAGCGTAATATGGATA 293954 30 100.0 36 .............................. GGGGGGCGGGCAGCACGGCGGTGATCTGCTTTTCGG 294020 30 100.0 36 .............................. ACGATCGCCGGCGAGGATCTTACCGGTTACACGGTA 294086 30 100.0 34 .............................. CGGAATGCTACTTACTATGCGCGCGCATCCTCGC 294150 30 100.0 36 .............................. GACGTTTATCTTATAGTCGAATTGATTGCTCATTGT 294216 30 100.0 34 .............................. GAACAAGCTGGTCGTTCAGAATCATTATCACTTT 294280 30 100.0 36 .............................. CGGTAGCGAAAACTACTTTTTATTTCAGGACAAAGA 294346 30 100.0 37 .............................. TCTTCATAGAACTGTTGTTTATTAGTGATGATATGTT 294413 30 100.0 35 .............................. TGAGCTATTTCTTTGTCGTCTTGTCTTGAGACTTG 294478 30 100.0 34 .............................. TAGAACATACTATTAATAATACATCAAGAACATC 294542 30 100.0 37 .............................. AATCGGCGCAAAGGACTACGCCGCCGGCAACCACGGC 294609 30 100.0 35 .............................. TTCGCTCCCTTTTTAACCCCGAGCGCGGGCATATT 294674 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.8 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : GTCGGGAGATACCTCTTCCATCTTCAGCCCCAAGAATCGGGAAAAGGTGATCGAATCATTGATGCGCTCCTCCAAAGCACAATCACTGAGGTTGTACCATGTCTCCAAAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGGGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGTTAAGCGTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGAGGAGTATTATGCTGTTTTTAATGCTCAAATATACGAAATAACTCCCTATTATACAATGAATTAACAAGCAAAATACACGCTAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : TTGTCATGAGACCTTTGCAAAATAAGGAGGTGGAGGGAAGAGGAGTTCTTCGCATAAAAGGAGCGAGTGAAAGGGGTGGTAGTAAGGAGTGAAAGTAGTTGTAAATCCCCCCTTGCGGAGCTACTTGAACGAGCTCCTCAAGGGTGGTTATGCCTTATCCTACGGATGAGGACATAATTATCCCCGGCGTTCTGTATAAATTAAAGGCGATGCTTTCAAGAATGTTTTGAGTATGGGTCTTGGCAAGTCCCCGGTATCGACATCGTCCGCCATGAAACCACCGGCGAATACTGCCAAAGGTGCGTTCGATGGTGCTCCGTATCGGACCGATTGCTTTGTTTCGTTGCTTCTCTTCCTCGGTCAATGCCCTGTTTCGTTGTGCCTTGTGCATAATGCCGTCTTGAAGGTGATGGGTTTGCAGGTAGGAACGATTTTCCCCGCAAGCATATCCTTTGTCCGCCAAGACGGCTGTACCTTGAGGTATGTTTGCACCCTGCAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 3 296084-300394 **** Predicted by CRISPRDetect 2.4 *** >NC_015571.1 Porphyromonas gingivalis TDC60, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 296084 30 100.0 36 .............................. TGTCATATAGATATGACATCTTAGATATTGGTACTA 296150 30 100.0 36 .............................. TGTCATATAGATATGACATCTTAGATATTGGTACTA 296216 30 100.0 36 .............................. TGTCATATAGATATGACATCTTAGATATTGGTACTA 296282 30 100.0 36 .............................. TGTCATATAGATATGACATCTTAGATATTGGTACTA 296348 30 100.0 35 .............................. TGTCGTAACAGCAGGGATGAACTATGCGCTGCACG 296413 30 100.0 34 .............................. CGTTATACCTTCTATCGTCTTCAAATCTAAGGAT 296477 30 100.0 36 .............................. GGGTGGCGAGCAATGACGCGCTCCAGAACCCGACCG 296543 30 100.0 37 .............................. CCTTTGCCGTACGGGCGCGGCCGTAATGCGATCAAAG 296610 30 100.0 36 .............................. AATACGTAGGAGGCGGACTATGATAGTAGCGATTAT 296676 30 100.0 36 .............................. CGTCAGCGCTTCAAGTACTCCACCCGCTCCTACGAG 296742 30 100.0 37 .............................. TTGTAGAATCTTATGTTTTTAGAGAACTATTTAATCA 296809 30 100.0 38 .............................. ATGAAATAACCCCAAAGATAAATCCAACTACAGGCAAA 296877 30 100.0 34 .............................. TAAATAATCATTTAATTGTAACATTTTGTGAATA 296941 30 100.0 35 .............................. ATAGTATCACACAACATCAAATGTTAGATGGATAT 297006 30 100.0 38 .............................. TTAGTAGGAGATGAAGACGACTTTTTTAACGTGGTCAA 297074 30 100.0 35 .............................. CTTTGTAGATTTATCGGATTATTTCGATATTATAA 297139 30 100.0 37 .............................. TTAATGCAAAAACTATAGTCCTCAACGCTAAAGACGC 297206 30 100.0 36 .............................. AGTATGCCTGACACGCGAGATCGCACCTTGTCGAGG 297272 30 100.0 38 .............................. ACGGGCGTTGTTCAGTCGGTCGTTATCGGAGTAATCGA 297340 30 100.0 35 .............................. ACTATTCGGGAGGGAAGATATACAACGAGACCGAT 297405 30 100.0 38 .............................. ACGGGGATGGCTCAGCCCTCGATTAGCCGGTTTCTGGC 297473 30 100.0 36 .............................. CTTGCCTTTAGAGCTCTTTTTTTATCAAGCTCATTG 297539 30 100.0 36 .............................. GCATTCGCGATTTTTCCGACCTCGAACGAATCGTAT 297605 30 100.0 35 .............................. GACGCAGGCGCGGGCGGACGTGTATAAAAAGTACT 297670 30 100.0 35 .............................. TTCGGTGGCATCGTCTTCGTTCGCATACAGAACGT 297735 30 100.0 37 .............................. ATTTCTTACGCCCCATTCAAACTCATCCAGAAATTCT 297802 30 100.0 35 .............................. TGTTTCAGGATTTACCGTTGTGTACGTTCTGAGCT 297867 30 100.0 35 .............................. GTGAACGGAGCGTCGAAACAATGCCACGTTCCGAA 297932 30 100.0 37 .............................. CCGAGCGATAAGACCACATAAGGAGAAACGATCCGCT 297999 30 100.0 36 .............................. ACCTGCAATAGATATACGACATAATTTCGTATTGCA 298065 30 100.0 36 .............................. CCTCTAAAATCATGTACGATTTTAGGGGGTTGTTTA 298131 30 100.0 35 .............................. AGTAATTATTCAAATTTCTTGTTTATCGGATCTCT 298196 30 100.0 35 .............................. GAGGCCTCATTCGGCTCTATCTTCGCACCCGACAC 298261 30 100.0 36 .............................. TGTTGGCTTCCAACTTGTCGGCTTTGATCTCAACAT 298327 30 100.0 35 .............................. CCGACCTGCTTCCACCCTCTTCCGCCTTTATTCAA 298392 30 100.0 36 .............................. TCTTTTTTTGAAGAAAATTCATAGAAACAATGTAAG 298458 30 100.0 36 .............................. GCTTTTTCACCTTTCGCGCCAATCGCTCAAAGCTCA 298524 30 100.0 36 .............................. GCTTTTTCACCTTTCGCGCCAATCGCTCAAAGCTCA 298590 30 100.0 35 .............................. GTGATACGATTAATACGTTAGCGTTATTCTTCATG 298655 30 100.0 35 .............................. TTCTTTATCGTGATATTTTGTCCGCTCTTTTTGAC 298720 30 100.0 36 .............................. AGGTTGCGCATTTCTTCTCCATGCAAGATGTAAACA 298786 30 100.0 37 .............................. TTCATGTCTATTCCTCTTCTTTATAGGTTCCTAATTT 298853 30 100.0 34 .............................. TAAATGCGTTCTCAATCACACCAATCTTGCCGGC 298917 30 100.0 35 .............................. CGTTCAGTTGTTCGCATTCAGTCGCCGACTGCCCC 298982 30 100.0 35 .............................. ATCCACATTAGACGCATTCGCACTCGTCCAGCCCG 299047 30 100.0 35 .............................. CTGATGACATACAAAGAGTATATCGCGGCAATGGT 299112 30 100.0 36 .............................. TATCCTCGTACAGGTTTGCCACCTTGTCGGAGACGT 299178 30 100.0 38 .............................. ATGCTTATTCAAAGGTGGATCGCGTGGTGATTTCTCAG 299246 30 100.0 36 .............................. CCTTCTACGATTACTGCCATTTACTTTACTTTTTTT 299312 30 100.0 35 .............................. TAATAGTCCACACCCCAACGCCAAAGGATGAATCG 299377 30 100.0 36 .............................. CGGTAATCCTCCAGCGACGCCAGCCCGTCCGTGGCG 299443 30 100.0 36 .............................. AACGTCGATGTCTCAGGCGACTATGGCACAGCCACA 299509 30 100.0 36 .............................. CGACATGCCACCCGCAGGACACGATATGCCGCGAGA 299575 30 100.0 36 .............................. GCGGCCCTTGTCGGCCGCTCTCTCTTTCGTTATCGA 299641 30 100.0 36 .............................. GCGTACCCGCCTCTGCAGTTGCAAACACAGCTGCGA 299707 30 100.0 35 .............................. CCAGCCTTGTTTTTCGAACCCGAGGTGGCAAGGAC 299772 30 100.0 37 .............................. GTACAGGCGATTACGGGCGTGGTGGGTAAAGAGTTCG 299839 30 100.0 36 .............................. CCGCGTCGGACAAGTCCGCGGGCTGGAGACCCAGTA 299905 30 100.0 36 .............................. TTTCTCTGACATTAAAATAGAAATCATCGCTGAAGA 299971 30 100.0 35 .............................. CCTCCGCCCCCAGCCCGCTATCGACCCCCACCTGC 300036 30 100.0 36 .............................. AGGGCTGACGTGTATAAAAAATACCTGGGGGATAAT 300102 30 100.0 36 .............................. CTCAACCAGTTCGGGCTGGAGGCGTCGGAGGCGGCT 300168 30 100.0 35 .............................. ACTTCGCCGTCCGCGGTAATGTGACCAATACCGAC 300233 30 100.0 35 .............................. CACCCACCCACGCCAGCACCCTCTGCCACCAGCGC 300298 30 100.0 37 .............................. AACTCAAAAAAACTACAATAAATATGCCAACAGTAGT 300365 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 66 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : AGTGCCGAACGAAATCGACTGATGGTGCTGTGGTCGGGAGATACCTCTTCCATCTTCAGCCCCAAGAATCGGGAAAAGGTGATTGAATCATTGATGCGCTCCTCCAAAGCACAATCACTGAGGTTGTACCATGTCTTCGGAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGGGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGATAAGCCTCTCAACCTGATTGAGGAAATCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAATATTATGCTGTTTTTAATACTCAAATATACAAAATAACTCCCTATTATACAATGAATTAACAAACAAAATACACACTAATTGCCATGCAAAGGTCTCTGTCATATAGATATGACATCTTAGATATTGGTACTA # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 4 605409-604390 **** Predicted by CRISPRDetect 2.4 *** >NC_015571.1 Porphyromonas gingivalis TDC60, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 605408 30 83.3 37 A.AC..CC...................... TTGCATACCGACCTCTTCCAACGAGCCTGCATCGCTC 605341 30 100.0 37 .............................. TTCCAGCCTGCAGACGACAAAGCAGGCGCCTCGAAGG 605274 30 100.0 36 .............................. GGCGTACCCCCTATGACAGCTACCCGGCTACTCATC 605208 30 100.0 37 .............................. GATAACTGGTTCGAGGAGTACGAGCGTAATATGGATA 605141 30 100.0 36 .............................. GGGGGGCGGGCAGCACGGCGGTGATCTGCTTTTCGG 605075 30 100.0 36 .............................. ACGATCGCCGGCGAGGATCTTACCGGTTACACGGTA 605009 30 100.0 34 .............................. CGGAATGCTACTTACTATGCGCGCGCATCCTCGC 604945 30 100.0 37 .............................. GACGTTTATCTTATAGTCGAANTTGATTGCTCATTGT 604878 30 100.0 34 .............................. GAACAAGCTGGTCGTTCAGAATCATTATCACTTT 604814 30 100.0 36 .............................. CGGTAGCGAAAACTACTTTTTATTTCAGGACAAAGA 604748 30 100.0 38 .............................. TCTTCATAGAACTGTTGTTTATTAGTGATGATATGTTG 604680 30 90.0 35 T...A.T....................... TGAGCTATTTCTTTGTCGTCTTGTCTTGAGACTTG 604615 30 100.0 34 .............................. TAGAACATACTATTAATAATACATCAAGAACATC 604551 30 100.0 37 .............................. AATCGGCGCAAAGGACTACGCCGCCGGCAACCACGGC 604484 30 100.0 35 .............................. TTCGCTCCCTTTTTAACCCCGAGCGCGGGCATATT 604419 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 98.3 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CTCCTCCAAAGCACAATCACTGAGGTTGTACCATGTCTCCAAAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGGGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGATAAGCGTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAATATTATGCTGTTTTTAATACTCAAATATACAAAATAACTCCCTATTATACAATGAATTAACAAACAAAATACACACTAATTGCCATGCAAAGGTCTCTTTAAGAATGCCAAGAAGCCTCTTCGGACTATATCTTGTGTGGAGCTTTTGGAGGAGACAATGAAAAATGAAGAGACAAAAGCACCGAAGCCTACGTGGTGCAGAAGCAAAATCGTTTGGCAATTTCAGATTTA # Right flank : TGTGGATGAGACCTTTGCAAAATAAAGGAGGTGGAGGGAAGAGGAGTTCTTCGCATAAAAGGAGCGAGTGAAAGGGGTGGTAGTAAGGAGTGAAAGTAGTTGTAAATCCCCCCTTGCGGAGCTACTTGAACGAGCTCCTCAAGGGTGGTTATGCCTTATCCTACGGATGAGGACATAATTATCCCCGGCGTTCTGTATAAATTAAAGGCGATGCTTTCAAGAATGTTTTGAGTATGGGTCTTGGCAAGTCCCCGGTATCGACATCGTCCGCCATGAAACCACCGGCGAATACTGCCAAAGGTGCGTTCGATGGTGCTCCGTATCGGACTGATTGCTTTGTTTCCTTGCTTCTCTTCCTCGGTCAATGCCCTGTTGCGTTGTGCCTTGTGCATGATGCCGTCTTGAAGGTGATGGGTTTGCAGGTAGGAACGATTTTCCCCGCAAGCATATCCTTTGTCCGCCAAGACGGCTGTGCCTTGAGGTATGTTTGCACCCTCCAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 5 1515311-1515077 **** Predicted by CRISPRDetect 2.4 *** >NC_015571.1 Porphyromonas gingivalis TDC60, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1515310 36 100.0 30 .................................... AAAATAATCACACTTATATAATATGGCAGT 1515244 36 100.0 30 .................................... CTGAGCAGCCTATCGAACATTGGCCACTTC 1515178 36 100.0 30 .................................... TTTGCGGAAGAGTGCATCTACAGCCACATC 1515112 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : CGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCAATGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACTTTTCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACAGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACAATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //