Array 1 219332-219489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLHE010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-041 tig00000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 219332 26 100.0 39 .......................... AAACTCAGCAATAGCTGATAGGAGGGTCAAAAAGTCTCG 219397 26 100.0 41 .......................... CCGACACTGCGAACTAATCATTTGTGACTCCTTTCGTCTCG 219464 26 88.5 0 ...TT.G................... | ========== ====== ====== ====== ========================== ========================================= ================== 3 26 96.2 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGTTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGCGCTTGATACCTTTGATAAATTTGTTAGTTGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAAGGTGTGATTGAGATGAGGCAAAGCATCTTGACTTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGAAGTCATTGGTACAG # Questionable array : NO Score: 8.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 153180-153042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLHE010000002.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-041 tig00000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================= ================== 153179 24 100.0 33 ........................ CCAGGGTGATGATATCAGAGAGCCAGAAAAGCT 153122 24 95.8 33 .............G.......... TTATGGTAATGATATTAGAAAACCTGAAAAGAC 153065 24 95.8 0 .....................G.. | ========== ====== ====== ====== ======================== ================================= ================== 3 24 97.2 34 CCCAGAATTACCAAATGAAAAAGG # Left flank : GGTAAAGCAGTAAATATACAGAATGTCGTTAAAAAAGATAGTATAGAAACTTCTTTTACTATTTATAGTGATTCAATTGATCTAGAAAAAATTAATTATTGGACAGATTCCTTCAATAATTGGTCATAATAACTAACTCTTTATAGTAATATGATTACTCCAGATAAAGCACACAGCAATAGACTCAGCCAGTAAGGAAAGGACGATAACAAAACGATGCTAACAAACCAAACGGGGTACAGGCATAGACTTAGTAAGCAGAAGCTACCTATTAGCATGGTTTCCTGCTTGCTAGGAATGGGGGTATTTATCTCTCCAACCTCTATCTCAGCTGATAGCCCTCCTACTATCACTATTAAATCCGCTGCAGATAAGGATATTAGTTCAAATCTACCAAAAGTTCCCCTGTCTAACGCTAAACCCGAAGAAAAACTGGAAGATACGCCTCAGCTACCAAATGAAAAAGGTCAAGGTGATGATATCAGAGAGCCAGAAAAGCT # Right flank : TCAAGGCGATGATCTAAAGAAGGAGGAGGATCTCAAAAAGCAACGTAAAGAGCTTACAGAAAAGCTTCGTGGCTTAAAGACTGTTGAGGAAGTTTTAGAATTCCTGAAAATGCCAATTCCAGGTTTTGTAACAGATGTGGACTGGCAATTCCTAATGGCATTTGTTGAAAAAGGAACAGCTAATAAGACCTTTGAGAAAGACAAGTTGACATTACTAGATATTTACTCAACCTCAAGTGGTCATATGATATGGCTAGGCTACCTAGTGCCAGAAAAACCAGAACCAATGCCTAAACCTGAGCCTAAGCCGGAACCAATGCCTAAACCTGAGCCTAAGCCAGAGCCAATGCCTAAGCCAGAGCCAATGCCTAAGCCAGAGCCTAAGCCAATGCCTAAGCCAGAGCCAATGCCTAAGCCAGAGCCTAAGCCAATGCCAGAGCCTAAGCCAATGCCTAAGCCGGAGCCAATGCCTAAGCCAGAGCCTAAGCCAATGCCAGAGC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGAATTACCAAATGAAAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 30614-32496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLHE010000006.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-041 tig00000602, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 30614 36 100.0 30 .................................... AGCTTGTCAGATTCTGAGGCATTAACACCA 30680 36 100.0 30 .................................... TGTATCGAATGCTCTGTTTACTTTTTGTTT 30746 36 100.0 30 .................................... TATGAGTAGTAAAGAGATTGCGGATAATCT 30812 36 100.0 30 .................................... TATATAAGTTTGCACCAGAACCATTTGTCT 30878 36 100.0 30 .................................... AAATTGTTGCATTCCCCCACCCCCTTTCTG 30944 36 100.0 30 .................................... CTGTGGTCGAACTATGTCCCCTCAACACGT 31010 36 100.0 30 .................................... CCAAAGCTTTCGCCAATTTCTTCAGAGATG 31076 36 100.0 30 .................................... CTGACAAGTGTTCAGTCTGACAATGCAGCT 31142 36 100.0 30 .................................... CGGAAGTCTGTCGCAAACTCCCCCAGATAG 31208 36 100.0 29 .................................... ATCAACAGGTGTTTCTTCAATAACCTTTA 31273 36 100.0 30 .................................... TAATCAACGTGAGAACTGGCAATTAGCCCA 31339 36 100.0 30 .................................... TACGTTTGTTCTTGATACGTATGATAAGAT 31405 36 100.0 30 .................................... CTAAGGTGCTTGAAGCCGAGAAGCTAGCCA 31471 36 100.0 30 .................................... AAGTTATTTTTTACTGATATGTTGTATGGT 31537 36 100.0 30 .................................... ACATAATCCGTAGGGTTATTAGCTAAGTGT 31603 36 100.0 30 .................................... TCATTGTCGAAATAAGCTAACTCTACATTA 31669 36 100.0 30 .................................... CAAAAAACAACACACTTTACCTGCCACCAG 31735 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 31801 36 100.0 30 .................................... AGCTATCAGACAGTGGAAAGATGATGGTAA 31867 36 100.0 30 .................................... ATTTAAAAATGCTAACTGCTGCAATTTATA 31933 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 31999 36 100.0 30 .................................... ACAAGTATCAGCTAGAAGAGCGGAAGAACT 32065 36 100.0 30 .................................... GTCAGTACCAAGCCTATGACGTGTTTACGG 32131 36 100.0 30 .................................... TATCAAAAATAGTTTGTAAATTATCAATAT 32197 36 97.2 30 ..................T................. ATGGCCGCATGCACTATACATTTACCGCAA 32263 36 97.2 30 ..................T................. TCGTTTCACATTCAAGTAAGTGTGCCCGAT 32329 36 97.2 30 ..................T................. TTTGCTAGGGCTTCCGCGTCCCATTTTTGT 32395 36 97.2 30 ..................T................. AGATGAGACGTGTAATGAATGGTTTGAACA 32461 36 86.1 0 ..................T..........TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.1 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTATTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : TCAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTACTTTTATTTTTCTACCCTACTATTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //