Array 1 4248-3090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWIN010000057.1 Streptococcus agalactiae strain 1297 NODE_57_length_10546_cov_9.51504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4247 36 100.0 30 .................................... ATCAGTTTGCAGTGGTTGACCTCCGACTTC 4181 36 100.0 30 .................................... ATATTAGATTTGATGATGAAGAGTTAATTG 4115 36 100.0 30 .................................... TTAACAGTTTCAGGGAAGTATAAACTTTTA 4049 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 3983 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 3917 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 3851 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 3785 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 3719 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 3653 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 3587 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 3521 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 3455 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 3389 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 3323 36 100.0 30 .................................... GCTAGCATGGCACAAAAATAGCGTTGGAAT 3257 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 3191 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 3125 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //