Array 1 956-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWEK01000186.1 Pseudomonas denitrificans (nom. rej.) strain 106_PDEN 1185_68946_762095_420_,...,77+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 955 29 100.0 32 ............................. CAGCTCATCGAGTACAGCAACGTGCTCAACAA 894 29 100.0 32 ............................. TAGTCATAACGGTCATAGTGCTTAGACGACAC 833 29 96.6 32 ............................A CCGACACCTACACCTCGACCAAGACCGGGGAA 772 29 100.0 32 ............................. CGCTGCTCCTGCTCTGCCTGATCCAGGCCGCC 711 29 96.6 32 ............................C GCAACGCCTCGTCGAGCGACGGCAGCGCGCTG 650 29 100.0 32 ............................. ACCCGGCGAAACCCTGCATATCGGCGACAACA 589 29 100.0 32 ............................. CCACTGGGTTACCCCGTATTGGTAGAGGGTTC 528 29 100.0 32 ............................. GATCGCCTCGTTCTCCGACCCGACGCCTTCCA 467 29 100.0 32 ............................. TCGACCTTGTCGACCCAGGCGACCGCCTTGAG 406 29 100.0 32 ............................. CCCATATGTCGCAATGTTCTATACCAACAGAA 345 29 100.0 32 ............................. TGCCGGTGGCGGTGCCATGCCGGGTGCCGACG 284 29 100.0 32 ............................. TCCTCCACCCGCTGGGTGATTTCCTCGGTACG 223 29 100.0 32 ............................. CGGGATAACAGTGGGAATCAGTCTGTAGGCTT 162 29 100.0 32 ............................. TCGTAGCGCGGACTGATGTCGTTGCAGTACTT 101 29 100.0 32 ............................. CCATGAAGGGTTCCTTCCGCGCCGTAGAGCAG 40 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGTCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTTCGAGGTCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11437-10127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWEK01000186.1 Pseudomonas denitrificans (nom. rej.) strain 106_PDEN 1185_68946_762095_420_,...,77+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11436 29 100.0 32 ............................. CAGCCGTGCATATCGCGCTGGATGTGCAGGGC 11375 29 100.0 32 ............................. CAACGCTTGGCGCGCTGCGAGGCGCTGGCGAA 11314 29 100.0 32 ............................. ACGATCCCGACCGCCAAGATTGGCCGTCGCCG 11253 29 100.0 32 ............................. GCTTGGATTCTTCTGCGTATGCGAAGCCGCAC 11192 29 100.0 32 ............................. ACGATGGCGTCCAGCAGGGTCGGCTCGATGTT 11131 29 100.0 32 ............................. AACGCGATATCGGACAGCGAACCGCCAGCGTG 11070 29 100.0 32 ............................. GCTGGAGCCGCCGGCAAGACGTTCGGCGAGGC 11009 29 100.0 32 ............................. GACGGCGACCTGAAGCGCGCGGATGCGATGAA 10948 29 100.0 32 ............................. ACGTTCTTGTGCTTCTTGCCGGTCAAATCCGC 10887 29 100.0 32 ............................. GCCGGCCAGGTGCTCGGCCAACAGCTCGCGAA 10826 29 100.0 33 ............................. ACTGGTACCGCGCGGGCAATCAGCGAACCCGCG 10764 29 100.0 32 ............................. GCTGCTCAGGCTAGCGCCGCCTCTACTCTCAT 10703 29 100.0 32 ............................. TGTTTACGAGCTTCAGCGGCCCTCCATGTAGA 10642 29 100.0 32 ............................. GAGGAGTTGGAGGCCATGATCGGCGCCAAGTC 10581 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 10520 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 10459 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 10398 29 100.0 32 ............................. CTGCGTGTTCACGCCGAAACCCTTGGCTGGGT 10337 29 100.0 32 ............................. TAGTCCTGGCGGATATCGCTGCACCAGTGCAT 10276 29 100.0 32 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 10215 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 10154 28 79.3 0 A..........A..C.....-..A....T | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGTCGGTGGATGGTCGAGGGGGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTAGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGAAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4271-3693 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWEK01000201.1 Pseudomonas denitrificans (nom. rej.) strain 106_PDEN 1200_4279_54855_631+,439_,390+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4270 29 100.0 32 ............................. CCCGCGCGGCAATAAGGTGAAACTGGGAGACG 4209 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 4148 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 4087 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 4026 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 3965 29 100.0 32 ............................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 3904 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 3843 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 3782 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 3721 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CGGCGAGC # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGTCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //