Array 1 49-443 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVBW01000013.1 Cronobacter sakazakii strain MOD1_O21_13 O21_13_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49 29 100.0 32 ............................. ATTTTCTGATTCCACCTTCACAATTTATGATA 110 29 100.0 32 ............................. ACGGCGTTGTTGTGTACGCCCGCACCGGGTTA 171 29 100.0 32 ............................. CGCGAATCGACGATATGATTGAAAGGGTGGAC 232 29 100.0 32 ............................. GGGCTTTGTGGTAACGAAATCCCGATCAGCGT 293 29 100.0 32 ............................. AACTGGCCGAGGATATCGAACGCCAGGTCTGG 354 29 100.0 32 ............................. GCGCTGGTAGCAGCCAAAAAACGGGGCGTTGA 415 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGCGGGGATAAACCGCGCGTCAGATACGGAGATATCCTCGCGATAAGG # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACTACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 90774-92083 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVBW01000014.1 Cronobacter sakazakii strain MOD1_O21_13 O21_13_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 90774 29 100.0 32 ............................. CGAAATTTATCAATTATCTGTCGGTGATAGCT 90835 29 96.6 33 ............................T GAATTGAACGTTCACAAATACCGCCTGGACGAG 90897 29 100.0 32 ............................. CTCTGGCGACGTCGCCAGAGACGATTAAGCGC 90958 29 100.0 32 ............................. CGGGGATGACTGTTGATGAGATTGTGAAAACG 91019 29 100.0 32 ............................. TCGATTACCGGTGCGCTTATGGTTTTGGGGGG 91080 29 100.0 32 ............................. TATTTGGCTGGTTCATGCTATCGCCGTAAACT 91141 29 100.0 32 ............................. CTGTTTATCCTGATAGAGATGACCGCCGTTCA 91202 29 100.0 32 ............................. CTGCTGGTGAAACTGCCTTTCGTGAACGACAT 91263 29 96.6 32 .C........................... GCTACTTCCTTGTAAATCTCTGATTGCAGGCC 91324 29 96.6 32 .C........................... TGTATATTTGCGCAAATAACAGCCAAATGTGG 91385 29 96.6 32 .C........................... TTCGAACCCACGTTGCGCGATAAAATTTTATT 91446 29 100.0 32 ............................. GCACAGGAACGCCGCAGGCAGGCGTGAATATT 91507 29 100.0 32 ............................. CCTGCGTGCCGGAGCTGCGGCGCGCGCGGCCT 91568 29 100.0 32 ............................. CCGAGAATATGTCAAAGGCACATGCGATGAGG 91629 29 100.0 32 ............................. GTGGCCCAGCGCCGGAAGGCTTCGAAAGACTT 91690 29 100.0 32 ............................. CATCCACTTCGCGCCGCGGCGGTATTTTTTGC 91751 29 100.0 32 ............................. ACCGCTATCCAGTGGGGGATTTACAGCCCTAA 91812 29 96.6 32 .C........................... GCTTATATCCTCTCCTGCCTGATTGCCTCCGG 91873 29 96.6 32 .C........................... CATACGGGTCATAGTCTGTGATTGTGCGGCCC 91934 29 96.6 32 .C........................... GGCGGTTTGGATTTGGAAATTTGATACAACTG 91995 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 92056 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 22 29 97.7 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACCGCTGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //