Array 1 175425-174357 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNSM01000002.1 Streptomyces sp. TLI_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================= ================== 175424 29 72.4 32 ...T.T..G....T...A..A...CA... AAGGCCGAGGTCTACCTGCACTTCGAGCACTG 175363 29 96.6 32 ...............A............. CACCAGTGATCTGTGGTCGGGGCCCGGTTGCT 175302 28 89.7 32 .....-........G..........A... CCGCTAGGTGCACCACCGGAGGCGATGTAGGC 175242 29 96.6 32 ..........T.................. TTGTACGCTGCGGCCTTTACCTTCAGGCGGGT 175181 28 65.5 0 ...G......TT.G.......T.AC.GT- - Deletion [175154] 175153 29 79.3 33 ........G.TA.C...T.......C... TTCCCCATGCACGGACCACTTCTTCATCAAGGC 175091 29 79.3 32 ......A....A.C.....A....C...T GCCATGATGGGGCGCTCCTGGCTCGTGTGTGC 175030 29 79.3 32 ........T..CTG...........CA.. GGGAGATCGGCTACGACCAGGAGCTGATCGAG 174969 29 75.9 32 .....T.....TTGA.T........C... ATCCGAGTCAGCACGTGGAAGGAGGAGAAGAT 174908 29 82.8 32 ...........CTG..T........C... AAGACCGCCGAGGACCTCGCGGGCGGTACCGA 174847 29 86.2 65 ........T..T.G...A........... GCTCAGGGATCGTGGCGCCGATCATCTGAGCTGCTCCCTGCTCCCTGCTCCCTGCTCCCTGCTCC 174751 29 79.3 32 ........T..T.G.AT........C... TCCTTGAACGCATCCGCGATGATGTCGGTGTC 174690 29 82.8 32 ..A........C.CT..........C... GAGGTCCAGGCGAAGCTGGCGCTCGGCCTTGA 174629 29 86.2 32 ........T..TTG............... CCGCAACTCTGGCACCTGGGAAGCGCCAGCAT 174568 29 89.7 32 ...........A.C...........C... TCGGTTCCCACCGCACTGCGCGAGGTGTGCGT 174507 29 100.0 32 ............................. AAGTTCGCGGGCTGGAAAGACGGCGGCGAACT 174446 29 100.0 32 ............................. GCGTCAGCCACAGGCTCGACGAACTGGAACGA 174385 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================= ================== 18 29 85.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : AAGGCACCCTCCGAGCCGACCTCGCACGCCACACCCCCGACAGCCCCGCCCGCAAGCAACAGCAAAAAGACTTGCTCCTCAACACCCTGGCCATCCCAGCACACTGGTTCACCCGACAGAAGACGTCCCTGCCCGCCCCCGAGACATGGCCGGTACACCCCGCACCCGCGCTCAAATATATGAACGTCGCCCTGTTCGACCCCGCCGATGGCACCTGTATCAGCGGCCCCCTCGGCCTGACCCTCCACCCGTCCACTGGACTGTCCAGGTGAGTCCCCACAAGGACACAGCCTCGAGCGAACGTTCCTGCCGCTATCGTTTCTCACCTCCGGTCCAGCCGGAGATAGGCCAAGAGTTCATAGATTCTGGCCTTCAGCCCCACCGCCGTGGGGATCACGTGCCGCCCAACCGGGCGGCACGTACCGCCCGGCAACACCTTTGGCTCTCCAGCAATATGGACAGTCACAGGCTGTCTCACCCATCGCCTGACCGGAGCGGAT # Right flank : CGACCTGCCCTTCGTGCGGGCTGGACGGCGAGGTGGGAGTCACCGCCGACGGCAGCCCCGTGCTCCTGGAAAGCAGCGACCCTGCGGCACCGCTGGCAGCGGGCTGCTTTCCGGGTCTGCGTCGATGGCCGCTGTACGGGTAGCACGTCCAGCCCCTGCCGGAGGGCGCCGACTTGGAGACGGTCTGCCGGATCGAGCACGCGGTCGTCTGCCCCGCCCGCCCGTTTCTGCTGGAGCAGCCTGCGCTGTGGAGCCGGTGGCTCTTGAACCAGAAGCGCCGACGGCGGGCCCAGGAACTGGCCGAGGCGGAAGCGGAGGCCCTGGGCGAGGCGTGAGCCGGCGGACGGTGGCCTGTCGTTGCGGGGCGAGCAGGTGCGCCGCAACGTGGAGTCGCTGCCAGGGGCCGACGGCGAAGGCGGCGGGACATCCTTGACCGTCACATCCAGGGCTGCAGCCGACGACGGTAGGCGTCCCGCCATCAGGCTGCTGGCGGTTGGCCA # Questionable array : NO Score: 4.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.28, 5:0, 6:0.25, 7:-0.27, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184061-185065 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNSM01000002.1 Streptomyces sp. TLI_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184061 29 79.3 32 G.C.........GGT........A..... GTAGATACAGCATCACCCAGCGATAGTCTGTA A [184064] 184123 29 96.6 32 ............T................ CAGCGCACCCGGCTGGATGTCGCCCGCGCCAT 184184 29 96.6 32 .....T....................... CTCTGGCGGTTCTCGTACATGTGGGAGCCGGA 184245 29 100.0 32 ............................. GTCACCTGATCGAACGGCACGTCGACCAGAGT 184306 29 100.0 32 ............................. GTCATCAGGGCGATCCCGCAGAGCGGCATCTG 184367 29 100.0 32 ............................. ACCACCAGGTAGGTCAGGAACTGCGTTGCGAT 184428 29 96.6 32 ...............A............. ACCGAGTACACCCCGGCCGAGGTCACCAAGCT 184489 29 96.6 32 ...T......................... ACGGCGGCCTGCGCTCCGTACGCGGGCCTCAT 184550 29 100.0 32 ............................. CCGCTGTGCCAGTCCTGCCGGGCCGACGTGCT 184611 29 100.0 32 ............................. CAGCGGGACACCCGCCGGCGCTTGGGGGTCTT 184672 28 96.6 32 ........-.................... GGCATGCAGGCCGCGCTCGTCGGCTTCCCCGC 184732 29 96.6 32 .......T..................... CACCCGCCAGGCCTCGCGCGGCCCGTCTGCTG 184793 29 96.6 32 .................A........... CAGCAGCCGAAGGATGACCGGCGTGCCCGCGG 184854 29 100.0 32 ............................. AACCTCGTGGTCATCTGCGGCCCTCGGCTGTC 184915 29 89.7 32 ...........A..T.............T ACGCCCTTCCCTGCTTGTCCGTACAGAAGGCC 184976 29 93.1 32 ........T..............A..... CCGGCTCTGGCCGACGCCATCGCCGACAAGCT 185037 29 96.6 0 .....................G....... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 96.2 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GTCGAATCCGACCACCACAAAGGCCTCAAAATCAGCCGCGCCGAAATCCGCGGCACCCTCACCGTCACCCACCCCACAAACTTCACCCACACCCTGACCAACGGCCTCGGAAAAGCCCGCGCCTACTCCTGCGGCCTCGTCCTCACCAGACCCACCAGCAGCTGACCACCCACCAGGAAACCCATCGCAGACGAACCAAAGGAAATCCCGGCAAGCAGGGCACGCAAAAGAGCAGGACCTGCCGTGCTGCGACCAGACAGCACGGCAGAAACCAACCCCACAAACGCAGCAAACAAGACAAGCAACCGGCGTCCTCGAAGAACCGGCCAAGGCGCAGATAGGAAACAGTTCCACCTCACCCGCCGCCTCCCCATCCAGGACCACCCCCACGCAAGCAGAGAGCAGACGACCACACCGTCACCGCCGCAAGGCTCAACGGGGTCCATCCCCGGGCGAGCGGGGAGCAGACGCACGGCGGGAGCGTAGGTCCACCGAAGGAG # Right flank : CCGGCGTCACCGTTACCACCCTCGGCGCTCCCCCGCTCCCGCGGAGGTGGGGAGAAGGTTGGCATTCTGTCGTCAGAACAGTCCCTGATCTTCCTTGCTGGTGTCTGCGATGACGGGTCGGAATTGGGTAGGGAGGTCGTCCAGACGGTCGGGGCCGGCCGCGGCGGCCACGGTAGGGGCAGTCTCCGCCAGCCAGATACGGAACTGTTCGGCGGCTTGGCGGTAGGGGATTTGCGCCAGGTCCCGGTGTTCGCCGGAGGGACAGAAGTCAACTTTGATGGTGAGCAGGCAGGTGTGTGGGGCGTGGTGGCTACCGGTCCAGGACACGCGGAGGGTGCCGCAGGGTTTGCGGCCGCGGGAGCTGTGGGTGTCGCGGTGGGTGGGGCGCAGGGGGCAGCAGGCGGTGTGGGCGGTCCATGCGGCGAGGTGGGGCAGAGGCAGGGTGGTGCGGGTGCGGCAGCCGGGGCAGCGGTGCCAGTGGTGTAGCCAGTGGTGGGCGT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 188577-190415 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNSM01000002.1 Streptomyces sp. TLI_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 188577 29 100.0 32 ............................. GTTGCTCGCGCGGCCGAGTCGCCCCGCAGCAG 188638 29 100.0 32 ............................. GTGGGCTGATCTGCAGGTCGGCGGACCACCGG 188699 29 100.0 32 ............................. CAGCCTCCGGCATATGCGAGAAGAGTCTGGGC 188760 29 100.0 32 ............................. CTCATCACCAGCCGAGGTGAACATGCCACGCA 188821 29 100.0 32 ............................. CGGTGCACGGCCGCCGCGATCCGCTCGCCCGC 188882 29 100.0 32 ............................. GACCCGGGCGGCGACCAGTGCGACGCGTGGTG 188943 29 100.0 32 ............................. GCGGGCAGGTTCATCGACCGCAGCACGCCGTT 189004 29 100.0 32 ............................. AAGGGCGACGGGGTCGCCCGGTGGGTAAAGGA 189065 29 100.0 32 ............................. GCCACGGTGTTCCCTGCGTCCGTCGACACCCG 189126 29 100.0 32 ............................. TCCTGGGGCGTTCTGAGGGGTCCTCTTATGCA 189187 29 100.0 32 ............................. GCAACAGGCCCCGCCAAGGCGGGGCCCGAAGG 189248 29 100.0 32 ............................. ATGAGCGCTTCGCCGACGGACGTCCCGTCACC 189309 29 100.0 32 ............................. GACTCCGTGGCTCGACGAAGGAAGAGCTCGAA 189370 29 96.6 32 ........................A.... GCGATCAGGCGGAGGAGTCCGCCGAAGGTGGC 189431 29 100.0 32 ............................. GTGCCGCTCAAGCGCGAAGCCAAGCAGCGGAT 189492 29 100.0 11 ............................. ATGGCGTCGCT Deletion [189532] 189532 29 100.0 32 ............................. GTTGGCCAGGGGATTCGTACTGACGCCGTACA 189593 29 96.6 32 ...A......................... CGCTCCCGCGCCCTGCGCGCCCGTATCGCTGG 189654 29 96.6 32 T............................ ATCGAGCTCGGCGCGGAGGCCGCGAACCTGAC 189715 29 96.6 32 .................A........... GCCCGAACGATGTCCTCCGATGCATGGATGGA 189776 29 100.0 32 ............................. TTCCGACGCCACTGGATTCCCGCGATTCAGGC 189837 29 96.6 32 ....................A........ GAGATCCTTCAGGGTCTTCAAGGAGAAGAGGT 189898 29 96.6 32 ...............A............. AACGATCAGAAGTACTCCGACCAGCTTCCCGG 189959 29 100.0 32 ............................. CAGTACGACCTGCGCCCGGCCTGTGCGTCGCT 190020 29 89.7 32 .........C..T...............T GCCCTCGGGTGCCGGCACCCCGGCGGAAGGTC 190081 29 100.0 32 ............................. TGGGTCTACGCGACGCTCCCGACCGGGCAGAC 190142 29 100.0 33 ............................. GCCTCCCGGACCAGCGGCTCGGCCTCGTCCCAC 190204 29 100.0 32 ............................. AAGTACGGGGGCTACACGTTCCAGGACGACCT 190265 29 100.0 32 ............................. GGCCTTCCCGAGGTACTGCCGCCCCCGCATGT 190326 29 96.6 32 .........................C... AGGGCTACATCATGGCCATGGACCACGTCGGG 190387 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.8 31 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGCCCCATCCGCGAGTACCTGCGACGGCGGGGAATCCGACACACCATCCCGGAGAAATCCGACAGCCAGGCGGCCCGCATACGCAAGGGCTCACGTGGCGGTCGGCCGACCGGCTTCGATGAGAATCGCTACAAGAAGCGCAACACCGTCGAGCGGGCGATCAACCAGCTCAAGCAACACCGAGCCGTGGCCACCCGCTACGACAAACGTCGCTACGTCTACCTCGGCACCGCCACCGTTGCAGCCCTCACCATCTGGCTCCGAACGTGATCGTCCGGACAAGTCCTAGCCGTGGCGCGAGACTTTCTTCCTGCAGGCCCAACAGTCCCCTCCAGCCATGTGACCATGGAAAGCATCTGACTTGGGGAGAAACGATGCATGAAGCGGGACGCAGGCACCGAGAAGCGTAGGGGTTTTGTCACGCTCTGACGGGTATGGGAAGTTCAGTGAAGATGGTTCAAATCGTTGCGTGTCCCGCAAGAACATGCAGGTCAGCGAGT # Right flank : CTAGGTCTGCTCGATGGCCGGCTGGCTGTCCGACTGCTCCCCTGCTACCAAGAGCAGGTAGCTCCCCTTAACGTTTAGCGGTAGGTACTCACGTGAGTACCTTGTACGTGGCTGCTCTAGCTTCTGTGGAGCGGGCGCCAGTACTCTCCCCGCAGGCCTTTGGACACGGGAAGCGTGATGAGCACAGCGGCTGACTACAGCAACGTCGATCCGGAACAGGCTTTGAAGTACGCCGTCCAGCACATCAGGGGTGACCGCGCCCAGATCATCGAAGGAATCATCGAGCCGGTGTCTCCTACCTGGGATCACGAAGCGGCAGCGGAAACCATCCGCGATCAGATCCGGCCGCGCGCACGGCAACTGGGATGCGTTACTGGATCCGGCAACCTGGACCTGCCCGGCTCCTCCAACTGGTTCGTTCCCGACATTGCGGTCGTCCCGGCAGCCCAGGCTAAGGGAGCCGCTGCTCTCCTGCCCGAGGACACCCTCCTTATCGTCGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 191337-191792 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNSM01000002.1 Streptomyces sp. TLI_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191337 29 96.6 32 ..............T.............. CGCCGATCGGAGAGCCACCAGAAGTGACCGTC 191398 29 100.0 32 ............................. CCGACCCTTCAGGTGGTCGGGATCGTGCCCAG 191459 29 96.6 32 .................A........... CTCACCCGGCCGCGGGTCACCGCCATCCGCGT 191520 29 89.7 32 ...............A.......AA.... CCGATCTACGGGCAGGGCCTGACGCTGGCGTC 191581 29 96.6 32 T............................ CAGTACGACCTGCGCCCGGCCTGTGCGTCGCT 191642 29 93.1 32 .........C..T................ GTGACGGCCCGCAGGATGCCGAGGGAGAACTC 191703 29 100.0 32 ............................. CGGCGGGCCGTCATCTCCGTGTGGACGCTGAC 191764 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGACATTGCGGTCGTCCCGGCAGCCCAGGCTAAGGGAGCCGCTGCTCTCCTGCCCGAGGACACCCTCCTTATCGTCGAGGTGACCTCGGAGTCCAACGGAGATACCGACCGCGTCGTCAAGCGCAAGCGCTACGCCGAGTACAACGCTCCGCTCTATCTCGTTATTGACCGCCAGGAGCAGAGCGTCACCCTCTTCTCGGAACCGGGAAGGCTCGGCTACACCCGCGTTGACGGACCTCACCCTTTCGGGGCCAAAATCAGAATCCCTGAACCCTTCGGTCTCGACATTGACACCAGCGAACTGGCTTGAGCTTGAGGCACTGATCATCCAGGGTGCTGAGTAGCAGTCAGCTGCCAATCGGCAGACCCTTCACCATCTCGACTCACTCTCGATCGCACCTGTGGCCCTGCTCCCACGTCGTGTACTTCATCGACGCGAGATGCCATACCGAGACCACAATGACGCGAGATGAGTAGTGATTCTCCTCAACGGTGCTTCC # Right flank : CAGCAAGTTCGGCCGTCAGGGTGGCCGAGGATCGCACCTCGCGGGCGAGCTCCGCGTTGCGCGAGGATGTAGATGGCGGTCGTCCCCCGGGGCGACCGAGGATCACAACTGGATCGTGAGCGACTTGCCCCACGTGTCCGTCAGGAATGGCGGTCACTCTTACGCGTACGTGTTGACCTCGTGCCGCCACAGGCACGGTCGCTCCGCCCCGATCGCCCCTTCTGGCAACCGGCCGTCGATCCGAGAGTCGCCCTTGACCTCATTCAGCCGCTTTTGGATCTGCGGCTTCGACGGCACCGGGACCTTCACCCGTTGCTGTACCTTCGCTTCCAGCACTTCGTGATCGACGAGTTCAGCCCGCCACCGCTAGGGCGCAGACACTTTGGCAGTGAGAGCGTAGTTGAAATCCCACCTTGCCTTGCCTGCGGGCAGAGAGTCGAGCAGTGTGCGTGTCGGCGGCCGGAACGAGTAGCAGTGGTGGCGCGTCGCGGCGACTACGT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //