Array 1 1701-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYUA01000110.1 Streptomyces sp. TRM68085 scaffold110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================== ================== 1700 29 100.0 32 ............................. GCCACCGCGGCCACCACACCAGCCGCCACGAA 1639 29 100.0 32 ............................. GCGGGGGTCGGCGCCGGGCGGCGGAAGAAGCG 1578 29 100.0 32 ............................. GAGGACTCGGGGCGGTAGGCCTCGGTCTTGTT 1517 29 100.0 32 ............................. CGGGGCTTCACGAGCACAAGGCCCCGGGCGGA 1456 29 100.0 32 ............................. TGGTCTGGGTCACGATCACTGCCATGGCGTCT 1395 29 100.0 32 ............................. TACGAGGCACCCCTCGGGGTGCCTGTGCGGTA 1334 29 100.0 32 ............................. GGAAGCCGCTGAGGAACGCGTCGGGCCGCGCG 1273 29 100.0 32 ............................. TTCCGGTAGACGAACCACGTCGTCATGGCGCA 1212 29 100.0 32 ............................. GTGAAGATCACGGTGGCCCCGACCGGGCTCAA 1151 29 100.0 33 ............................. TGCTCGACAGAGACCGCCATCACGCACCCCCCC 1089 29 100.0 32 ............................. ACGCCGTAGTTCTCCGCGAGGTGGTAGGCGTC 1028 29 100.0 32 ............................. CCGGCAGCGTCGTAGGTGCGGCCAGCCGGGCG 967 29 100.0 32 ............................. CTGGACGACATCCGCGCCATGACGGCCAACGG 906 29 100.0 32 ............................. GACATGGCCGTGTCGGCGACCGGGGCAGTGGT 845 29 100.0 32 ............................. TCAGCGAACTTGCCGACGGAGAGCATCGCGGT 784 29 96.6 32 .....................T....... AGACCGACCGCCGTACTGCCGCTGACCGCGAT 723 29 96.6 32 ............................T CGGGTACGGGGTCAGGCACAGCACCCGGTCCG 662 29 100.0 32 ............................. GCAGCCTCTGGCCATCGCCGTAGCGGTGGCGG 601 29 93.1 32 ........T...........A........ GCCGGCTCCCTCCGCCCCGCCCCGGGCTTCTA 540 29 100.0 32 ............................. ATCATCGTCGGCACAGCGGGCAAGGCGTATGC 479 29 93.1 8 ..............TG............. CGGTAGGC Deletion [443] 442 29 72.4 50 ........T.CG.CGG..A......C... GAGGCTTCCTACGTCTGCTCCCCGCGCCGCTGCGGGCTGTCGTGAGAGTC 363 29 79.3 142 .....T.....C...G.T.A...A..... CGCCAGGTCCCCGCCAGCCCTGTGGAGGCCGGGCCTCTGCTCGCGAGGGATAGTCTCGGTGGAGCAGGTAGTGAAGGAGTAGCGGCATGGCCGTTTTGTCGGAATCGGTGAAACTGCTCGAGAACGATGCAGGTCAGGAAGT G,GT [345,354] 189 29 96.6 32 .............A............... GACACCACCGGACCCCCAGGCCCCAACCCCGA 128 29 96.6 32 .............A............... TCGGAGACCGCCCCGGGCGAGCTCACCACTGG 67 29 93.1 0 .............A..............T | ========== ====== ====== ====== ============================= ============================================================================================================================================== ================== 26 29 96.8 36 CTGCTCCCCGTACGCACGGGGATGGTCCC # Left flank : ATGGTCCCGGCCGCTCCGCCGACAATGTCAAGGTCCGCCACTGCTCCCCGCGCCCGCGGGGATGGTCCCGCCTCCTCGTACCCAGGGTGGCCGCTGTACGGCTGCTCCCCGCGCCCGCGGGGATGGTCCCTGTTCCGAGAAATTGAATCCTCGGATCAGCGTCTGCTCCCCGCGCCCGCGGGGATGGTCCCGTTCCGATGCCCGGCTCCATGTAGGCGAGTCCCTGCTCCCCGCGCCTGCTGGGATGGTCCCGCGACCTGTACGTCTCCGAGCGCCACCCAGAAGCTGCTCTCCGCGCCGCTCACGCTCGGTTGTCGTGTAAGTCCTCCCGCGTCGGCTGGGATAGTCCTCGCCAGCACTGAGGAGTCCGGGCCTCTGCTCGCGGGGGATAGTCTCGGCGGAGCAGATAGTGAAGGAGTAGCGGCATGGCCGTTTTGTCGGAATCGGTGAAACTGCTCGAGAACCGCGTAGTCACGTCGTAAAGATGCAGGTCAGGAAGT # Right flank : TCCGAGGACACCGGGGCCTGCGGTGTCGGGCTGCTGCTC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTACGCACGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2894-1949 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYUA01000110.1 Streptomyces sp. TRM68085 scaffold110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2893 29 100.0 32 ............................. TTTTCCGCCTGAGGAAAGTTGCGATCCAGGCA 2832 29 96.6 32 .........................C... TCCTGCTCAGGCGGCCGTGAGCCCCACTCTCC 2771 29 96.6 32 .........................C... CACTATGACCTGATGGACGATCAGTACTTCTA 2710 29 96.6 32 .........................C... TTCGCCTTGGCCTCGGCCTCCGCCGTGCGGGC 2649 29 100.0 32 ............................. GACCACGGCCCCCACTGCCTCGCGGCGGTGGG 2588 29 96.6 33 ............................T GTGTCCCCAGTGACGTCGCCGCGGCCAAGCGCG 2526 29 100.0 32 ............................. CAGGCCCTCCGGTTCCCCGGCAGCTTCAATGC 2465 29 100.0 32 ............................. TGGTCAGTCTCGTCGCGCTCGAATCCGCGGCG 2404 29 100.0 32 ............................. GCCCCCTGCGCTTGTCGGAAGGAAACACACGG 2343 29 100.0 32 ............................. GGCTACCAGGCAGGGCCCCGGTTCACGAACTA 2282 29 86.2 32 ..........CG.C.G............. TCCCCAGAGAGTTTGTCAAGATCCTTCCGATT 2221 29 86.2 32 ..........CG.C.G............. GGCCGCTCCGCCGACAATGTCAAGGTCCGCCA 2160 29 86.2 32 ..........CG.C.G............. GCCTCCTCGTACCCAGGGTGGCCGCTGTACGG 2099 29 86.2 32 ..........CG.C.G............. TGTTCCGAGAAATTGAATCCTCGGATCAGCGT 2038 29 86.2 32 ..........CG.C.G............. GTTCCGATGCCCGGCTCCATGTAGGCGAGTCC 1977 29 79.3 0 ..........CG.CTG.T........... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 93.5 32 CTGCTCCCCGTACGCACGGGGATGGTCCC # Left flank : GGTCCCTGGGTGTTGGAGCCGGCCGGGACGTCGGTCG # Right flank : GCGACCTGTACGTCTCCGAGCGCCACCCAGAAGCTGCTCTCCGCGCCGCTCACGCTCGGTTGTCGTGTAAGTCCTCCCGCGTCGGCTGGGATAGTCCTCGCCAGCACTGAGGAGTCCGGGCCTCTGCTCGCGGGGGATAGTCTCGGCGGAGCAGATAGTGAAGGAGTAGCGGCATGGCCGTTTTGTCGGAATCGGTGAAACTGCTCGAGAACCGCGTAGTCACGTCGTAAAGATGCAGGTCAGGAAGTCTGCTCCCCGTACGCACGGGGATGGTCCCGCCACCGCGGCCACCACACCAGCCGCCACGAACTGCTCCCCGTACGCACGGGGATGGTCCCGCGGGGGTCGGCGCCGGGCGGCGGAAGAAGCGCTGCTCCCCGTACGCACGGGGATGGTCCCGAGGACTCGGGGCGGTAGGCCTCGGTCTTGTTCTGCTCCCCGTACGCACGGGGATGGTCCCCGGGGCTTCACGAGCACAAGGCCCCGGGCGGACTGCTCCC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTACGCACGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24101-21753 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYUA01000056.1 Streptomyces sp. TRM68085 scaffold56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24100 29 100.0 32 ............................. CAGGCCCTCCGGTTCCCCGGCAGCTTCAATGC 24039 29 100.0 32 ............................. GGGATACCGGCGGCTTCGGAGAGTTCCCGGAT 23978 29 100.0 32 ............................. CTGCCCATGATGGTGGACCCCTTGTCCTCACA 23917 29 100.0 32 ............................. TCCATGGCTTGGATGCCGTGCGAGATCGCGTA 23856 29 100.0 32 ............................. AGCGTCGGTTCCCGCCGGACCCCCGGCGGCGG 23795 29 100.0 32 ............................. CCCGTCTCCGTGTCCACCGGAGCCAGGTGGTC 23734 29 100.0 32 ............................. TACGAGGACGTCGAGACCGCGGGCACAGACCT 23673 29 96.6 32 ........T.................... TCGGCTTCGGCCGCGGACCGCTCGATTTCGGC 23612 29 100.0 32 ............................. CCAGTGGGTTGGTGGCCGCTCCCTGTTGTGCT 23551 29 100.0 32 ............................. GCCACGCAGCCCCCGGCGATGGGCACCACGCA 23490 29 100.0 32 ............................. AACGACAGCGGCGAGTGGACGTTCGCGGACAG C [23478] 23428 29 100.0 32 ............................. TCGCGGCGAGTCCGCTGGTAGCCCTCCACTGC 23367 29 100.0 32 ............................. AATAGGCAACAAGCGGCAGGGATGCAAGGGGA 23306 29 100.0 32 ............................. CCGGCCGCGGACATGCTCGCTGACGAGCTCCG 23245 29 100.0 32 ............................. GTCCCGGTCCGGTACGGAGCGCCCGATGTTCG 23184 29 100.0 32 ............................. GGCGCCGACATCGCCCAGCTGCTCATCACCCA 23123 29 100.0 32 ............................. GCGGCGGAAGAACACGACGCGGAGGAGGCGAA 23062 29 100.0 32 ............................. AGCGACCAGGACGGTCCGGAAGCCGGTGATCA 23001 29 100.0 32 ............................. CTCTCGCCCGTCGGCCCCTGGCGGCCTCCGTG 22940 29 100.0 32 ............................. CCGCTCATCGGCACCACCGACAAGGTCAACGC 22879 29 96.6 32 ............................G CCCTCAAGGCCCGCCGCCCCGGCGACTTCGGC 22818 29 100.0 32 ............................. AACGGCATCGACGACGTGGTCGCCGAGCTCCG 22757 29 100.0 32 ............................. CGAAGCCGCCCGCCTCCTCGTAGCCGAAACCG 22696 29 100.0 32 ............................. GATGTGGTCGAGGGCGCCCTGGCGGTGGCCCG 22635 29 100.0 32 ............................. CCGACCTGGAACAACGCCACGCTGGACTGTGA 22574 29 100.0 32 ............................. GAGAGACCCGGCCGTCAGCTCCGACCAGAGCA 22513 29 100.0 32 ............................. TACAGGACTCGACCGCACGAAGGACACCGATG 22452 29 100.0 32 ............................. CACCCGCGGGATGACTGCGGCCGAGCTCGGCA 22391 29 100.0 32 ............................. GGCGGCAACACGTACGGCCCGTTCTCCCGGTT 22330 29 100.0 32 ............................. GTGAGCTGGTGACGCTCTGGACCAAGGGTCGG 22269 29 100.0 32 ............................. CCCGGGTCGGAGTGGGTGCGGCAGATCCGCAG 22208 29 100.0 32 ............................. TACCCGGGCAAAATACGGCCCCGGAAGGATCA 22147 29 100.0 32 ............................. GTGATCGGCATGCGGGGCTCCTAGGTGGCGGT 22086 29 100.0 32 ............................. AACTCCCCAGCCAGCGGGAACCGCGGGCAGAG 22025 29 100.0 32 ............................. CGGAGCCTCCGCCAAGGGGCCCTGGACCAGAA 21964 29 100.0 32 ............................. CAGAAGGGTGTGCCGTATGAGATGAAGGTGCG 21903 29 100.0 32 ............................. CCGCAGCCTGGCCTCCTCGCCCGCATCGCGAA 21842 29 96.6 32 ....................C........ CGCCCGGTGACCTGCTGCAGCGTGTTCGAGAT 21781 29 96.6 0 .................C........... | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.7 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : AGAGCGACAGAGGCCTGAACGTCTCGTCCGGCGTGAACTACGGAACGGAAGACGAGGCGGCAATCTGGTGACCGTTATCGTCCTCACAAACTGCCCTCCCGGCCTCCGCGGCTTCCTCACCCGATGGCTCCTGGAGATCTCCGCCGACGTGTTCATCGGCAACCCCTCGTCCCGCATCCGAGACCTGCTCTGGGACGAAGTCCAGCAGTACGCCGGACAAGGCCGTGCGCTTCTCGCCTACGCGACCAACAACGAGCAGGGCTTCACTTTCCGTACCCACGACCACACCTGGCACCCAACCGACCACGAAGGCCTCACCCTGATCCGGCGTCCCAACATCGGCACGAGCCAAACGAGTAGCGCTACGAAGCCGGGGTGGAGCGCGGCGTCCAAGCGTCGACGCTTCGGAAAGCGATAGAGCCCGAATGTGCCCTATGTCGGAATCGGTGAAAGTGCTCGAGAATCTCGCGATTGCTACGTAAACCCGCAGGTCAATGAGT # Right flank : TCTCGTCTGCGAAGACGAAGCCTCGCATCACAAGACGCCGTAGGTCCTGGGCACCGGTCAGAGTGTCGTGGGGGCTGGCTGGCTGGACAGATCCGCACTGCGATCCTGGGGACTGTCCCAACTCGTCGAGGATTGCGCGATTACGCACGTTCACGGCTGGTCTCGCGGTCAGCAGCCTCTTTCCTTGCGAGTCCTGCCTTGGGAGTCACGCCCGTACTGGCTGTGCCAGGTACGAGAACCTGGAACACTGGCTGGGCCCGGCCTGTCGGCGTCTTGGGTGCTCAGAGGGACTGATTCCGGGGTCAGTGTCTGGAGCAGGTGCCATCATCCTGAGGCATGAGCAGAAACGACAGCGACGAAGCGTACGTAGTCGGCCTGTGCAACCAGGTTCTTGAGAGAACGGCGCTCACGCAGCACACGTTCGACTGGCTCCTGGGTGACCCCGCGGCGAGCGGCCGACGAGCCAAGCTGCCGGTCGATGCGTTCTGGCCCGACTACCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33832-34596 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYUA01000056.1 Streptomyces sp. TRM68085 scaffold56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 33832 28 82.8 32 ...-.T........T...A.....C.... ACCGAGCCAGCGGAACGCCCGGTCGACGGGTA 33892 29 86.2 38 .........TT..A............G.. GGCGGCCCGAACGTCATGTCTGATCCGGGATACTGCTC 33959 29 89.7 32 .....T.......GT.............. CGGGCGCTGCGGATCGCGGTCCCGGCATTCAA 34020 27 93.1 32 ............--............... TGGCAGGCTTCAGCCTCCAGTACGGCGAAAGT 34079 29 86.2 32 .G.........A....T.......T.... CAGGCTGTCAATGCCGACAAGCTAGGTGGGTC 34140 29 82.8 32 .........A...A.AT......A..... CGGGGCACGCACATCCAGTCGACGCTGCCCGT 34201 29 93.1 32 .......T.............G....... GCCAACTTCACGTTCTTCGCCGAGCAGGTTGT 34262 29 100.0 32 ............................. TGCCCGTCCGAGGACCCGATCGTCACCGTGAT 34323 29 96.6 32 ................T............ AGCCTGGGCATGGGCGGGCTCGGCTCGGGGAA 34384 29 100.0 32 ............................. GCGCGTTAGAGAGAAAGGAAAATAGGGGTCTA C [34394] 34446 29 100.0 32 ............................. GGGGGCCTCACCGTTGGCGGCGATGTACGCCT 34507 29 100.0 32 ............................. CAACGGCATCATGGCCGGCACCCACCTCGAGG 34568 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 93.1 33 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CACCCCAGCCCGCCGCCAGCAGCAAAAGAACCTCCTGCTCAACACCCTGGCCATACCTGCCCACTGGTTCACCGGAAGAAGAGCACTACTCCAGCCCGAAAGATGGCCGGGAAACAAAGCCCCAGCACTGAAAAGGGCCTACACTGCCCTCTTCGACCCAGCCAGCGGCACCTGCATAAGCGGACCAATCGGCCTCAGGCTCTCCCCCAGCACTGGTCTGTCCAGGCGACCGTAGCTCCGGACGCCACACCCAACCAGCTATCGTGACTCACCTCCCGGTCAACCGGGAAATAGGCCAAGAGTTTGTGCATTCTGGCCTTACTCCCCACACCCGTGGGGACAACTTGCCGCCCGAGCAGGGCGCTCGGGCGGCAAGGTCACTGCAAGAATCCGCGAACCACGATGGTTCAAAGGGGCCCAAAAGCAAAGGCCTACACGACCTGCTCGGCGTTTGCCGCATACGCGTGTGCGGTCGAGCGGCGAGCAGAGCCCGGCGCGAG # Right flank : TGGGCCCCGGCTTCTTCGGTTTTGAGCTTGCTCTGCTCC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35-553 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYUA01000105.1 Streptomyces sp. TRM68085 scaffold105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 35 29 100.0 32 ............................. TGGGCACGGAGCTCGGCGACGTCTTCTTCGCA 96 29 100.0 32 ............................. TACAACCTCAAGGCCGGAGACCCGGGCACGGT 157 29 100.0 32 ............................. ACGGGCCCAGGCGGCATCTATGACCGGCTGGA 218 29 100.0 32 ............................. ATCGCGGGCGGCTGGTACGCAGGAGTCGTTCA 279 29 100.0 34 ............................. ACCCTGTTTCGCGGGCCCTGTGGGTCCTGGGGGT 342 29 100.0 32 ............................. TCGAACTTGGTCAACTCAGGGTGCCGGTTCTC 403 29 96.6 32 .........................C... GTCCTGGCCGCCGGGGCGCAGGCCCTTCGCCC 464 29 93.1 32 ...........A.............C... GAGATCGTCGACGCGAGCGTGAGCGTCGTCGT 525 29 93.1 0 ...T.....................C... | ========== ====== ====== ====== ============================= ================================== ================== 9 29 98.1 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CCTGGGCCCCGGCTTCTTCGGTTTTGAGCTTGCTC # Right flank : CAGGTCGACGATGGGTCGGAGTTGACGAACTGTCTGTTCCCCGCGCTCCGCGATGGTCTCCGGCGCTTCGGTCCGAGTCCGACCGGTGCCAGTTGCTCCCCGCGCCGCTCACGGCCGGGTTGTCGTAAGAGTCCTGCTTCCCGCGGCGGACTCTGCTGCTGGGGATAGTCTCGGCGGAGCCGGTAGTGAAGGAGCAGGGGCATGGCCGTTTTGTCGGAATCGGTGAAACTGCTCGAAAACCGCGCAGTCACCCCGTAAAGCTGCAGGTCAGGAAGTCTGCTCCCCGTATCCACGGGGATGGTCCCCCCGGCATCGTGCGTCAATCCGACCGAAAGCGCTGCTCCCCGTATCCACGGGGATGGTCCCCGGGCCGCGTTCAGCGTCGGGACCCTCGTTGGCTGCTCCCCGTATCCACGGGGATGGTCCCCGGCCTGAAGTACGGCTACGGCGCGAAGGGCAGCTGCTCCCCGGATCCACGGGGATGGTCCCGACGTGATGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 829-1460 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYUA01000105.1 Streptomyces sp. TRM68085 scaffold105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 829 29 100.0 32 ............................. CCCGGCATCGTGCGTCAATCCGACCGAAAGCG 890 29 100.0 32 ............................. CGGGCCGCGTTCAGCGTCGGGACCCTCGTTGG 951 29 100.0 33 ............................. CGGCCTGAAGTACGGCTACGGCGCGAAGGGCAG 1013 29 96.6 32 ..........G.................. GACGTGATGTCTTCCAGGGGGTGGGCCACGGT 1074 29 96.6 32 ............................A AAGTTGACCGGGCAGGCTTGGGACTGGGTTTG 1135 29 93.1 32 ............CG............... TCGGTGTGTCCCATGTGGCCGCTGCCGCTCTG 1196 25 86.2 32 ............----............. TCGGCGGTGCGGTCCCTGCGCCGCACGGTCCG 1253 29 93.1 32 ............CG............... CGGCCTGACCGTTCAGGCCACGTAAAGCGCTT 1314 29 93.1 89 ............CG............... TTCAGCGGGCCTCTGTGCTGCGGATCCTGGCCCATCCCCGCGCCCGCGGGGGTGGGCCCCTACAGCCACGCGCCCGGCCCGGTCGGCGG 1432 29 82.8 0 ..........CGC..GT............ | ========== ====== ====== ====== ============================= ========================================================================================= ================== 10 29 94.2 39 CTGCTCCCCGTATCCACGGGGATGGTCCC # Left flank : GGGTCCTGGGGGTCTGCTCCCCGCGCCCGCGGGGATGGTCCCTCGAACTTGGTCAACTCAGGGTGCCGGTTCTCCTGCTCCCCGCGCCCGCGGGGATGGCCCCGTCCTGGCCGCCGGGGCGCAGGCCCTTCGCCCCTGCTCCCCGCACCCGCGGGGATGGCCCCGAGATCGTCGACGCGAGCGTGAGCGTCGTCGTCTGTTCCCCGCGCCCGCGGGGATGGCCCCAGGTCGACGATGGGTCGGAGTTGACGAACTGTCTGTTCCCCGCGCTCCGCGATGGTCTCCGGCGCTTCGGTCCGAGTCCGACCGGTGCCAGTTGCTCCCCGCGCCGCTCACGGCCGGGTTGTCGTAAGAGTCCTGCTTCCCGCGGCGGACTCTGCTGCTGGGGATAGTCTCGGCGGAGCCGGTAGTGAAGGAGCAGGGGCATGGCCGTTTTGTCGGAATCGGTGAAACTGCTCGAAAACCGCGCAGTCACCCCGTAAAGCTGCAGGTCAGGAAGT # Right flank : CGCGTTCTTAAAGAGTTCCCCGCCGTTACGCACGTCTCAGCACCTGTACAGGCGGGCTTGGGCGTTCGAAACGGGCCCAACTCCTGCTACGTACAGCGCGCGGAACTACGCGCAGGTCCAAGAGTGGCCGGAGCGGATGTCTCTAGCGTTGGCCCGAAGCGGTCTCTGGTCTGGCGGCGCCGCTCTACGATGGGGGCTTCCGTTGACGCCGGGAGGCTGCTGTGTCGCCACACCGTCCCGACTACCCGCCCAAGACTCCGCCGCCTCCCAAGCGGCCCGTAGAAACTCCGCGGCCAGAGCAGCAGGACCCCCCGCCGCCTGCCCCTGTCACGATTCGCGGCCGCAGCGTTCGGAACTGGGTGTTCACACCGAGCGCAGCCGCCGCTGCCCGGGCGGGCCGGCAGGTTGTGCAGGCGCTCCAACGGTGGGGTTACCGGCTGAAGGACGACCAGCCCCAGAGGGTCGTCGAGTTGCTGTTCCGTTCCGCAGCCGAGGACGGC # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.50, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTATCCACGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGTACGCACGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2392-3232 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYUA01000105.1 Streptomyces sp. TRM68085 scaffold105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================= ================== 2392 29 75.9 32 T.........CG.C.G.A.......T... TGACCCGCGACCAGACGGTGTGTGCGGGGCCG 2453 29 79.3 173 ..........AG.CTT.........T... CGACGCTCCGCCGAAGACAGCCCCCGCCAGCCCTGTGGAGTCCGGGACTCTGCTCCTGGGGATAGTCTCGGCGGAGCAGGTAGTGATGGAGCAGCGGCGTGGCCGTTTTGTCGGAATCGGTGAAACTGCTCGAGAATCACGTAGTCACTCCGTAAAGCTGCAGATCAGGAAGT 2655 29 100.0 32 ............................. ACCGTAAAGGTGGACCTGGGGAGCATCCTCGG 2716 29 100.0 32 ............................. CGGTCCATTCGTGGCACCGGCCGAACACTCCG 2777 29 100.0 32 ............................. ACCTGCACGGCGCCTCCAAGCAGCCGCCCTGG 2838 29 100.0 32 ............................. ACCACCGTGGCCAGCGTCATGGCGTGCGCGGA 2899 29 100.0 32 ............................. CACGAGGGCGCAGGAGTCTGGGGCGGAATGCT 2960 29 100.0 32 ............................. GCGGTAGTGGTGGCGTCGCCCCGGTCGGCGCC 3021 29 100.0 32 ............................. CGCCGCGATATTGCGCGGGTCGTCCACGACGA 3082 29 96.6 32 .........................T... TGCGTGATCTCACGCGTGGCGACCTTCGTCTG 3143 29 96.6 32 .........................T... CAGGCGCAGGAACTGTGCATCTGCGGCCATGC 3204 29 96.6 0 .........................T... | ========== ====== ====== ====== ============================= ============================================================================================================================================================================= ================== 12 29 95.4 45 CTGCTCCCCGTACGCACGGGGATGGCCCC # Left flank : ACCGGCTGAAGGACGACCAGCCCCAGAGGGTCGTCGAGTTGCTGTTCCGTTCCGCAGCCGAGGACGGCGGCCGACGTATCTCGCTTCACCTGGCTGACGACGAGGAACGGAACCAGGTGATGGTTCTGGCACTCAGCCACAGGCAGGACATGCAGCTGGGGGACGACGATCAGGTCCTTCGGGACACCGAGCACATGCGCTGCGTTGCGGCTCTCGGTGTCCGCGACGTCGGTGTCGAGACGACGCTGGACGGACGGCGTTGGTGGGCAGGTTTGGACCTTCCGCGTCCACAGCGGGCTCGCCAGGTGGACGAGCGGCAGCCGCATGCTTTGACCCGGGCGCCCCGGAAGCTGGAACGGCCGCCGAATCCTGTGTAGCGCTGCTCCCAACGCGTGTGGGGATGGCCCCTGGACGTAATCGGTCGGTGCGGTGCCGGGGTCCTTCTCCCGCGCCCGCAGGGATGGACCCGTCGAGCTGATCGAGTTCGAGGGCATCGACAT # Right flank : TGGGTGTTGGAGCCGGCCGGGACGTCGGTCGGCTGCTCC # Questionable array : NO Score: 4.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-1.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTACGCACGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 88% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //