Array 1 515-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTY01000011.1 Bifidobacterium angulatum DSM 20098 = JCM 7096 strain DSM 20098 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 514 29 100.0 32 ............................. GCGGCGATACACACCATAGACGACACGCTGCT 453 29 100.0 32 ............................. ATGCTCTCAATCTTCAAAAAAGAGAATCTCTA 392 29 100.0 32 ............................. CAACGGCGCGCTTACCAAATCACGGCCATATC 331 29 100.0 32 ............................. GGATGTGCTCGGAACTCCTGCGCAGCCCCCTC 270 29 100.0 32 ............................. ACGGCCATCCGGTACCGGTAGGTCGTGTCGCC 209 29 100.0 32 ............................. GGCCTGCCTGTAGCAGTGCTCAGCGCCTGATA 148 29 100.0 32 ............................. GCTTACGCGAAGGCCACCGAGAAGGCAGTGCG 87 29 100.0 32 ............................. TTGTCGTGTGCGTGTTGCCTTTGGAATCGGTC 26 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCACACGCGGGGATGATCCC # Left flank : ATGTGGGTTTGTGGGATGAACGGGTAGGGGAGGTCTCTGCTGGAAAATCCTATGGTGACGATGAATGGGACGGCGGCGAATGGTAGTGATTGTGCTGACGGCATGCCCAATCGGTTTGCGAGGAGATCTTACCCGTTGGTTATTGGAGATATCACCAGGGGTGTTTGTGGGGCATGTCGATGCTCGAGTTCGGGAAAAGATATGGAAACGTATCGTTGAACTATCAAAAGATGGCCGTGCCATCATGGTCTATTCTGCGCGTAATGAGCAGCATTTGGCATTTAAGGTACATCGAGCGGACTGGAAGCCCACGGATTGCGACGGGCTGGAGTTGGTGAAACGACCTAAAGAAACGAAGGAAAAATCATTCGCGGGCACGCCTCGCCGAGGTTGGAGCAACGCCAGTAAATATCGGAAGGCAAAGAAATATTCAAAGTAAAACTGAATGAAAAATACTCACGTGATGAGAATGTGCCTTGATATTATGCTATTTTCTTAGT # Right flank : T # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 247388-245042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTY01000002.1 Bifidobacterium angulatum DSM 20098 = JCM 7096 strain DSM 20098 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247387 29 100.0 32 ............................. AGTGGACAACAAACAAGGCTATATCAAGACAC 247326 29 100.0 32 ............................. CTGCTCGTCAACAGCGACTTCAGCCAGGGCAC 247265 29 100.0 32 ............................. GGTCGTGCAGTGGGCTGCCGACGCCTGGGCTT 247204 29 100.0 32 ............................. AGGCCGAGAAGACCGACGACGATACCTTGCAG 247143 29 100.0 32 ............................. TGCGCGACCTTCAAAACACCTTGCATGACCTC 247082 29 100.0 32 ............................. GAGAGGAAGAGAATGGAGGGAAGAAGAATCAT 247021 29 100.0 32 ............................. CAGCCTCGGCAAGGAATTCCAGACGCTGAAGA 246960 29 100.0 32 ............................. TGGTGGGGAGCTCCAGGCAGATCATGTGGGCC 246899 29 100.0 32 ............................. CCGGGTGGGTTATGCACAATGCTTGAAAAGGG 246838 29 100.0 32 ............................. GGACGTGTTCGTGGCATCCACATCGACGGCCG 246777 29 100.0 32 ............................. GTTTCGGTCGGAGCCGCGCCGTCGATAACAAG 246716 28 96.6 32 .....-....................... ACCTACGGCGGCTACACCACCCTGAGCCGCCA 246656 29 96.6 32 ............................T GTGGATGCGCCCGTGGCTGGCATGTTGGATTT 246595 29 100.0 32 ............................. ACTGAGGGGCAAGTCATGTGTGAGAAGTGCCC 246534 29 100.0 32 ............................. GCGCCCACGCACGTAGCACACAACACGCCAAA 246473 29 100.0 32 ............................. CGTCATCCGCAGATCGACCAGGGCACCACCGG 246412 29 100.0 32 ............................. GCGATGAAAGACGGCAAGAGGAACGAAGGCAA 246351 29 100.0 32 ............................. GCGATGAAAGACGGCAAGAGGAACGAAGGCAA 246290 29 100.0 32 ............................. TCGGCGACCTTCCAGGCAAAAGTGTTATCTGT 246229 29 100.0 32 ............................. GGTGATGCACGACGAGATCATGGCCGCGCACA 246168 29 100.0 32 ............................. AGCACCAAGAAACGGCTTAAGCCCCTCCAAGG 246107 29 100.0 32 ............................. GGTGCGGTTGGACCCGTCCTGCGCCTGGTAGG 246046 29 100.0 32 ............................. CATTCAATAGGCCGTTAAGAATCGCGCTACCT 245985 29 100.0 32 ............................. CGTGAGGTGCACCGGCTTCGACGGTGCACAAC 245924 29 100.0 32 ............................. GGTGCGGTTGGACCCGTCCTGCGCCTGGTAGG 245863 29 100.0 32 ............................. CATTCAATAGGCCGTTAAGAATCGCGCTACCT 245802 29 100.0 32 ............................. CGTGAGGTGCACCGGCTTCGACGGTGCACAAC 245741 29 100.0 32 ............................. GAGTTGTGCAATCTTCTGATTCCCCTCGTGTC 245680 29 100.0 32 ............................. GCCAAGATTCAGGCTCAGCGTTTGGTCGAGAT 245619 29 100.0 32 ............................. CCTCCAGGTAAACCCTCCATGTGAACCCTCCT 245558 29 100.0 32 ............................. GCGTAGGCGGCCGTCTCGGCACTGAAGCATGT 245497 29 100.0 32 ............................. CGCATCAGCCGCCAGCCGGCCGGACCCGTCTA 245436 29 96.6 32 A............................ TCGGACGAGGCCGCGGCTGCCATCAAACGCAT 245375 29 100.0 32 ............................. AACGGCGGCAACTGGTACCCCGTCGCCAACAG 245314 29 100.0 32 ............................. GCGTAGGCGGCCGTCTCGGCACTGAAGCATGT 245253 29 100.0 32 ............................. CGCATCAGCCGCCAGCCGGCCGGACCCGTCTA 245192 29 96.6 32 A............................ TCGGACGAGGCCGCGGCTGCCATCAAACGCAT 245131 29 100.0 32 ............................. AACGGCGGCAACTGGTACCCCGTCGCCAACAG 245070 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.7 32 GTGTTCCCCGCACACGCGGGGATGATCCC # Left flank : | # Right flank : CTATGAGGATATCCGAATGCAGATGCTATGGGGTGTTCTCGTTGTCTATTTAGAAGTGCAACACCCTTGTTGGTCCTGTAATTCTAGCAGTTTGTCGGCGAACGCCTCGGCGGGCGTGCGGTAACCCAGCACGCGCATGGGCCGGTTGTCGGTTTCGTCGACCATCTCCCCGACATCCCCAGCCATATCCATCCGGATCCCGCTTCTTTTGGACGGATGCCGGCGGATCAAGCCGTTGCGGTTTTCGTTGCCTTCCCGCTGCCAGCTGGAGTACGGGTCGGCGAAATAGGCGTCCATGCCCAGCTCGTCGCGCAGGCGCGCGCCGGGCGAGCTCGGTGCCGTTGTCGTGTGTGACGCTGATTCTGGCGCCTTCGGGCATCCGGGGGAATATCGCCAGCTGCGCTCCGATGTTCTCCCCGGCGGTCTTGTCAGGGACGATCCGGGCCATGAGGAACCAGGTCTTCCGTTCAGCCTCGGTGTGCAGGTTGCATCCCACGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //