Array 1 205683-203102 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQLJ01000001.1 Neisseria bergeri strain M40559 M40559_CHA5855A72_cleaned_ctg_2503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 205682 32 100.0 31 ................................ AACAATAGCTTTAACGAAAATACGAGGAGTA 205619 32 96.9 33 C............................... TGCCTGCGTTTCGCCGCCTTGTTTTGGCTTAAT 205554 32 96.9 34 C............................... TGAATAATTATCATCAAGCGCAAGTTATAGCCTG 205488 32 96.9 34 C............................... GTACAAAACACCCTGAAAAATATGAAGGCTATAA 205422 32 96.9 37 A............................... GAAACATCAGTGGCATGCCGAACTCAACGGTTCGTTC 205353 32 100.0 34 ................................ GAAACGAAATACACGCTAAACGTTTTTGTCAGGG 205287 32 96.9 33 A............................... TACAACGGCGAGGGCGTGTACGTCTTCACCGCC 205222 32 100.0 33 ................................ TGCCAAAACCAAATCGAAGCGTGGGAACGCGTC 205157 32 96.9 33 C............................... AGTACCTTTAGGGATTTGTTTTATTTCGCTCCC 205092 32 96.9 33 C............................... AGCAAAAACCCAAGCATTTATGCCTCGCTTTTA 205027 32 96.9 34 C............................... ATCGGCAAGCTCCTTGAACGTATCCAGCTCTTCG 204961 32 100.0 34 ................................ CGAATAGTTAAAGAAATGGTGTTTTCTTCACAAG 204895 32 96.9 33 C............................... AGCTCTAAGGCATGTGAAGATTTTTTGTACGAG 204830 32 100.0 34 ................................ TTAACCAACCTCTTAAAAAAACCGTTTCGCCCCA 204764 32 100.0 33 ................................ ATGGCTGGTGTAATGACTAGATATTCATGCAAG 204699 32 100.0 33 ................................ ACCAGTTGCTACACCTCAAGCAAAAAAGGTATC 204634 32 96.9 32 C............................... GCGCGATATATCCTGTATCTGTTTTTTTGCCA 204570 32 100.0 33 ................................ TTTGATATACTGGTTTCATTGTGAATCTAACTT 204505 32 96.9 33 T............................... GTCTATGATGACGACCGAACCGTTATTTTCGGG 204440 32 96.9 33 A............................... TTCGTAATATGTGCCTGTTGCTTCTGAACAGCA 204375 32 100.0 32 ................................ TATACAGCCTGCTATATATTCAAAAGTTCTTA 204311 32 96.9 33 C............................... CCGTCTTTGCCGTCCCTGCCGTTTGTGCGCCCC 204246 32 100.0 32 ................................ CAAAGGATGCTGAATGTGATCACGTCGTTCCG 204182 32 96.9 34 T............................... TCAAGCAGTTGCGCTTGGTGGATGTGCCGGGCGA 204116 32 100.0 34 ................................ CGTCCTTATTACCCAGCCCCAATAATAGCTTGTA 204050 32 100.0 33 ................................ AGCATGAAGTCTTTGGGATTCGGGTCAGTTAAT 203985 32 96.9 34 A............................... TAAACCGAAGTGAAAGGAAAAACATCATGTCTCA 203919 32 96.9 33 A............................... TTTTAAATTTCATATCATCCTCCTACTTGAAAA 203854 32 96.9 34 A............................... TCGTTCTCGTTCGGCATATGGTCATCATACCGCG 203788 32 96.9 32 T............................... CGGTGTGAACGGCTGCCATTGTTCGGGCTTCA 203724 32 96.9 34 T............................... CAACGATTGACCAGGCTATGGACTATTCTGTGTC 203658 32 96.9 34 C............................... ATTCAAAATGTTATCTTTGGATGACAGACACCGG 203592 32 96.9 33 A............................... AAATGGGCTTTATATGCGATTTCTTGAAAAAGA 203527 32 96.9 33 T............................... TGCTGCTGGGCGTTGTCGTTCCTCATGCTCAAG 203462 32 96.9 33 T............................... CCCGTTCCGACCTCGTGCCGAACAGCCCACAAG 203397 32 96.9 33 C............................... AGCCCATTACGTCAATAATTATTTTAAAATTAT 203332 32 96.9 36 T............................... CCTGTTGGGAATAGCATGTGCAATCTGTCTTCCCAC 203264 32 96.9 33 T............................... AAGGCAGAAATTGATTTTGATTTCGTCACCAAC 203199 32 96.9 34 T............................... AGTTACGGTTAAATACGCTTGCCATTTTCTACCA 203133 32 87.5 0 T.........TC......T............. | ========== ====== ====== ====== ================================ ===================================== ================== 40 32 97.6 33 GCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : GCATGGAGGGATAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCTCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACTTGGGCAGCAAATGGCGGCGCAAAGTGGAACATCACGGCGCAAAACCGACGGTCGATATATTCAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATTTGGATTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGCTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCAAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGC # Right flank : GGCGCGGACGACATCCGCTTCCTGCGCGAGCTGGGTTTGTAAACCCTTAAAGGACAATCCGATTTCCCTACGGCTTCAAACTCTGTCGGGGTCGAAGCAAAAATGCCGTCTGAACTTGGTTTCAGACGGCATTTTTTAATAAAAAAAGCTATGTTTTAGTAATCTGTTGATTTCAATTCTTTGCAAGGGAAAAGACAATTATTTTCCGGTTGGGAATAAACCTATCCTGTTGAATACCTTAAAGCCAAGTACGCCTATCAACACTATATTAAAACACAGTCTAAAAAATAATTTATATTATATCCATATATAAGTATAATGACACTTATTATCAACTCATAAGTGAAGTAGAGATGCGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGCTGGCAGCCTGTGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //