Array 1 209077-208010 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVCX010000010.1 Salmonella enterica subsp. enterica serovar Livingstone strain 1236H Contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 209076 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 209015 29 100.0 32 ............................. AGCTACAGGAACGCCGCAAGGCTGAAGCGCCA 208954 29 100.0 32 ............................. GCTAAAAAATTAGGGGGGGGCGTTGATGGCTG 208893 29 100.0 32 ............................. CCATTAAACCGTGGGGCAAGCACCGTGCCGAT 208832 29 100.0 32 ............................. AAATGGGCGACCAGCGGCATTTTTATGTTCCG 208771 29 100.0 32 ............................. CGCAATTACACTGACAATTCATCAGCACAGAC 208710 29 100.0 32 ............................. AATTATTTGGATTCGTTATGAATTTTAACAAA 208649 29 100.0 32 ............................. CGAATCCGACCTCTAAAATTATGCGTAGACCA 208588 29 100.0 32 ............................. ATCGCATCAATAGCCTGCTCAAACGTTTGGGT 208527 29 100.0 32 ............................. ACGATTCAGGACGTGCTGATTTCTGGGCTGGT 208466 29 100.0 32 ............................. ATTGGAATTTGTTGTGAAAAACACGGGCGCAC 208405 29 100.0 32 ............................. TGGCTGAAACTAGTCAATCCACCTCAATCTGC 208344 29 100.0 32 ............................. GAGTCATAGTATGAGCAGGACTGATTATTTAA 208283 29 100.0 32 ............................. GAGATGAGGCCATATCTGTACAAAGGGAGTTA 208222 29 100.0 32 ............................. AATGCTCTTTCCGTTGTGTGTTCCGCATAACA 208161 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 208100 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 208039 29 93.1 0 A...........T................ | A [208012] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGTCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227437-225333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVCX010000010.1 Salmonella enterica subsp. enterica serovar Livingstone strain 1236H Contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 227436 29 100.0 32 ............................. CGCGAACAAATGCCCTTACCTGCTTAGTCTTG 227375 29 100.0 33 ............................. CCCGCCGCCGTGGGGAGATCTCATCCGGCGTGC 227313 29 100.0 32 ............................. CGGCAGAACTGCCACATGGAAACGGCAATAAC 227252 29 100.0 32 ............................. GCACTCCCGGTATCGCCGCAGATACAGGCGTT 227191 29 100.0 32 ............................. CGGTCAGATTGTCAGTATAGGGCAATCTGACA 227130 29 100.0 32 ............................. CGGCAACAGTAGCCACTCAGGGTGGATGGTAC 227069 29 100.0 32 ............................. TGCTACTGCTATCTGTAAAATAGCGCTTAAAT 227008 29 100.0 32 ............................. GGGCGGTAACAGAATGAGCAAACCCACAATAG 226947 29 100.0 32 ............................. GTGGTTTCATCCTGATTAATCATCGAGCGCTC 226886 29 100.0 32 ............................. TCCAGAAATAGATAAACGGTCATCGTGTGGAT 226825 29 100.0 32 ............................. GCGGCAAGAGCGTTAAATACTGGCCTCAATGA 226764 29 100.0 32 ............................. GGGGAATGGTCGGTAATTTTGACGGACGGTGA 226703 29 100.0 32 ............................. CCACTGTCGGTGTTGATCGCGCCGATATTGAG 226642 29 100.0 33 ............................. TGCTGGCCGCTCGACGGCCGGGCCACGGCGTGC 226580 29 100.0 32 ............................. TAAATCATACCGGTACGATAGAGTCATATGAG 226519 29 100.0 32 ............................. GAACAGGCCCAGGCTGCGCAGCAGCAACAGAT 226458 29 100.0 32 ............................. TCGAACAGCGACTCCGACCAACCACTGCCGGA 226397 29 100.0 32 ............................. CGCACTCGGTTTACTCACCACACCCGCGATTG 226336 29 100.0 32 ............................. AGTCGGCAGCGACACCTAAAGAGCATGAATTT 226275 29 100.0 32 ............................. AGTCGGCAGCGACACCTAAAGAGCATGAATTT 226214 29 100.0 32 ............................. AGAAACCGCTTCGTCTTTGCCCGACTCGCTTT 226153 29 100.0 32 ............................. TATCCCGGTAGGGATAAATTTCACAATCAGGA 226092 29 100.0 32 ............................. ACCTACGTCACGACAAGGAGATAGCCGACACC 226031 29 100.0 32 ............................. GTAACGACGGTTCCGGCGCTGGAAAAGGTGAA 225970 29 100.0 32 ............................. CTGTGCTTTCTTTTCGGCACGCTCGCACCGGT 225909 29 100.0 32 ............................. GGATCTAACGAGCTGTAAAAATTCCGTGTTTT 225848 29 96.6 32 ............................A TAAATTGCGGTTTTACGGTTCGCTGAATGTCG 225787 29 100.0 32 ............................. CACCCACATCCGATTTAGCTCCATATATCCCC 225726 29 100.0 32 ............................. GAGTGTACGAAATGTCCAGACAATCGAAATAC 225665 29 100.0 32 ............................. CATTAGACTCGTATGCGACCGCTATCGGGGGA 225604 29 100.0 32 ............................. AGCGGGAAAAAATCGAGAAATATATCGACGGC 225543 29 100.0 32 ............................. TCGCGCGTTAATGAGGCCTTGCGTACCTGGGG 225482 29 96.6 32 ............................T CGTTCATCGGCAGCGTCACGCAATATGAAGAT 225421 29 100.0 32 ............................. GGGCAGATCGCTATATTTAGCCCGCAACTCAT 225360 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTAACTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCGGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //