Array 1 8287-4701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJEQA010000011.1 Bifidobacterium pseudocatenulatum strain CLA-AA-H257 NODE_11_length_88754_cov_33.103668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 8286 33 100.0 33 ................................. TTGTCTACAGACCATGACACAAGATTGCTTACG 8220 33 100.0 34 ................................. ATTATACCACACGTTTAGAATGCGGGCGGGTTCG 8153 33 100.0 36 ................................. AGCCAATGTCTGTAATGCCACACATGCTCACCTCCT 8084 33 100.0 35 ................................. TGCGCGAATACGACCAGCGCAACTTGTGCAAGATT 8016 33 100.0 37 ................................. CCGTAAGCAGTTTGACCGGTGGTTGGCGGAAGCGGGC 7946 33 100.0 36 ................................. TCAATACCAACACCCACCGAATCCAGAAGCCGTGAA 7877 33 100.0 34 ................................. CAACTCTAATGCACTACGGACTCAAAACACACGA 7810 33 100.0 33 ................................. TACAAGCATCGTGGCAGCATCACCCCTAACCCG 7744 33 100.0 33 ................................. TGGAACGCTCTCTACAACGGTGTGCAGGTATGG 7678 33 100.0 33 ................................. AAGCAAATCTGGATTAGTCACGTAGACGGTGAG 7612 33 100.0 33 ................................. GCAGCCGACACCGCACCCTACTAAACGGATTGG 7546 33 100.0 35 ................................. GACTTCGCTCAATACGCCCTGCTCAGCCGCATGGC 7478 33 100.0 34 ................................. GCCCTCGTACCCCCATACTGGTAGGATGTTGGTG 7411 33 100.0 36 ................................. ATGTCACGAAACTTGACCGTGAGATGGCATCGCGGC 7342 33 100.0 33 ................................. CTGCTCGCGAGCGCCATCCTCTGGGCCGACAAG 7276 33 100.0 34 ................................. AACATTTTCCGTGAGGAAATGCGTATGGCATCCA 7209 33 100.0 34 ................................. ATCATGCGTCTCACGGGCTTCCATGCCCTCGATA 7142 33 100.0 35 ................................. CGAGATAATAGCGAGGGGTATCAGCGTTCGAGGCG 7074 33 100.0 34 ................................. ATTCCGCATGCCGCTATTACGGACACGGCCAACA 7007 33 100.0 35 ................................. CGTCAGAACATTGTTCTTAGTCATCAAATCATTAA 6939 33 100.0 33 ................................. ATACGCAGCGCAAGGCGACTACCAGAACGCCAT 6873 33 100.0 33 ................................. CTCATGCAGGACGGCGACCCGCTCAGCGCCGAC 6807 33 100.0 36 ................................. GTTAGTCACCTGCGCTTTTTGCTGGATGAACTTATC 6738 33 100.0 33 ................................. AGTCGCGTGACGGTCAACAATTCCGGCGGATAC 6672 33 100.0 34 ................................. ATTGCGTTCCGGTTCGACGTGCCCAGACGGTTCT 6605 33 100.0 34 ................................. TTCCACCCGAGGTTGATTTTCCGGCGCGAGGTTG 6538 33 100.0 34 ................................. ATTGCGTTCCGGTTCGACGTGCCCAGACGGTTCT 6471 33 100.0 33 ................................. TCATCGGGATTAACGCCGAGCCCTTTGACATGA 6405 33 100.0 33 ................................. ATGGCTTCGAGCACGTCAGCTGGAATCAGTCTC 6339 33 100.0 34 ................................. ATTCCAGATCTGCGTTTTTGTCGTGATGATTTTG 6272 33 100.0 36 ................................. GCCCATAAATCCCAGCATTGCGCCCCGTACGCGCCG 6203 33 100.0 36 ................................. AGGCTCGCTCTATAGTTTTCGTCGAAAATCGGATAA 6134 33 100.0 35 ................................. AACACGATATCCAGTTGGGTAACGCTTACATGGAA 6066 33 100.0 35 ................................. AATAGTCCCCAAGCGCAAAACCTGATTGTCGTCGT 5998 33 100.0 34 ................................. CTGACCGACGTGGCAATCGCCAAGCAGGGCGGCG 5931 33 100.0 33 ................................. TAAAAAATAATGGGGAGTATGACGTCATGACCG 5865 33 100.0 34 ................................. ATACACTTGTTCACACCGTGCAGACGCCGGATAT 5798 33 100.0 34 ................................. AAGCAACAATACGTCAATATCGACATAATCGCCG 5731 33 100.0 32 ................................. ACCAGCCGCCGCACCGCCGGCCTCGCGCACGA 5666 33 100.0 34 ................................. TGGTTCTGGTTGATGGTGTTCTCGACGTTCTGCT 5599 33 100.0 32 ................................. ACCAGCCGCCGCACCGCCGGCCTCGCGCACGA 5534 33 100.0 34 ................................. GCCGCATCGGCGACCTGCCTGACGGAATCCAAAT 5467 33 100.0 32 ................................. TGAAGGGAGCATGGTGATGACCGTGGCTGCCA 5402 33 100.0 34 ................................. ATACCATCCTCGTTAAGGGTGGCGTGGTCGAACA 5335 33 100.0 35 ................................. CCCGACAAGCGTAGGGGCGTGCACCGTTTTATGGT 5267 33 100.0 33 ................................. ATGCGACTCGCTACGCCGTGCCCACGTCTGGAA 5201 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 5133 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 5066 33 100.0 33 ................................. AAGGCCGCGTCCGTGCAGGTGCAGGCAGCTCAG 5000 33 100.0 35 ................................. ACGTCGGACAATACCATCAAGCAACAGGCCAACGA 4932 33 100.0 33 ................................. ACGCAGGTCAGCCCGATCCTCGACCGCATCCCC 4866 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 4800 33 97.0 34 ....T............................ GATACGATTAAGATGATTTTCGAGCGTCGTATCA 4733 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 54 33 99.9 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTTTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //