Array 1 132-1480 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIZP01000131.1 Pseudomonas aeruginosa strain PA3 NODE_131_length_1584_cov_10.2336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 132 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 192 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 252 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 312 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 372 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 432 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 492 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 552 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 612 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 672 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 732 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 792 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 852 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 913 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 973 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 1033 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 1093 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 1153 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 1213 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1273 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 1333 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1393 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1453 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 62738-62290 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIZP01000035.1 Pseudomonas aeruginosa strain PA3 NODE_35_length_62868_cov_8.49345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62737 28 100.0 32 ............................ TCGTTCGGCTTGGACTTACGGCCGACCAGGGT 62677 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 62617 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 62557 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 62497 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 62437 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 62377 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 62317 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38165-39449 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIZP01000050.1 Pseudomonas aeruginosa strain PA3 NODE_50_length_47939_cov_6.65152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38165 28 100.0 32 ............................ TGGATCACGACGGTGAGTCCTACACCTTTGGC 38225 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 38285 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38345 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38405 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38465 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38525 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38586 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38646 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 38706 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 38766 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 38826 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 38886 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 38946 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 39002 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 39062 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 39122 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39182 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 39242 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 39302 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 39362 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39422 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //