Array 1 31173-29684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPY010000013.1 Listeria fleischmannii strain FSL L7-1645 NODE_13_length_66189_cov_37.346004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 31172 36 100.0 30 .................................... AAAAAAATTCAACTAGCAGTCAGAAAAGAA 31106 36 100.0 30 .................................... CGGGCTTTCATACGGTATGGCCGTTGGAGC 31040 36 100.0 30 .................................... ACGAATGGTAAATTGTCGGAAAGCTGTCGC 30974 36 100.0 30 .................................... CGAATCCATTTGTTTCACTTGATCCTCTTG 30908 36 100.0 30 .................................... ATATGACTTATACTTACTACTAGTTTTTTC 30842 36 97.2 30 .......................A............ TTTTTCATCTCTATTTCGCTCCTTTTATTC 30776 36 100.0 30 .................................... TTTCGGTCTTTTTTATTACTGACGGTCATT 30710 36 100.0 30 .................................... AAAAAAATTCAACTAGCAGTCAGAAAAGAA 30644 36 100.0 30 .................................... CGGGCTTTCATACGGTATGGCCGTTGGAGC 30578 36 100.0 30 .................................... ACGAATGGTAAATTGTCGGAAAGCTGTCGC 30512 36 100.0 30 .................................... CGAATCCATTTGTTTCACTTGATCCTCTTG 30446 36 100.0 30 .................................... ATATGACTTATACTTACTACTAGTTTTTTC 30380 36 100.0 30 .................................... TTTTTCATCTCTATTTCGCTCCTTTTATTC 30314 36 100.0 30 .................................... CTCCCATTCAAAAATAGCGTTGGATACACC 30248 36 100.0 30 .................................... AGTTAAGTTCGATTTTATGACCCTTATATT 30182 36 100.0 30 .................................... TAAAAAGCCCTTTGCGAGCCCATCGCCATT 30116 36 100.0 30 .................................... AACTTCATCCGTGGTGGTGCAATCACTATT 30050 36 100.0 30 .................................... CCAGTTGGGATTGCAATAATAATTCAAAAG 29984 36 100.0 30 .................................... TTCAAAACTAAATTCACAGAATCCGAAATA 29918 36 100.0 30 .................................... TAACTACCATTTGGCTTCTTGTAACTCACT 29852 36 100.0 30 .................................... TTGGATTTGTTCGGCCGCTCTGGCAATTTC 29786 36 100.0 30 .................................... ATATAGGCTTGCAGAGTATCACTTGTACAT 29720 36 86.1 0 .............................A..TGGA | T [29689] ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.3 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : TCTTCTACGACATCATCCAGGTAAGATACACCCCGACGCTTAGCCAAATGTGTCAGTGCTACATAAATCTCTGAAACTTCAAGCTTTTCATTTAGCCCTTTTACTCTCAACTCATAAGGATTTTCGTTCACGATATCACAAATATCCATATCATGCGCCAAAAGTAATTGTTTAATTCTTTCTCTACGATGCTTTTTGCGTCGGCTTAGACGTCTAGATTGGCGGCTTGTCCTTCTGCTTTCATTTTCTGAAGCATCTCGACTACTGAATAACCTTACCCCAGTATCTACGACATCACCATTTTCAGCATCTATAATCCCCCATCCTACAGAAGCCACCCCAATATCCAAACCTAAAACCAATTTTTTCATATGATGTTCCCCTTCCTTTTGTGTACTAATTAAATTATACAGTTTAAAGAGCGATAAAGCTACTATAAAATAGTTTTATGGTATAATAAAACTAAGTAGTTTCTAAATCCTCATTTTGACGAATTTGAG # Right flank : AATATTATGATTCGCGCCGAGTTTTAACACTCTCAAAATTTTATTTCCCATACGTTTCCTAAAAAATCACAAAACCATTTGCGTCTCCAAAATCTAATTTTGGAGACGCAAATGGTTTTTAGTTTGGCTTGGGTAGCCGCCTGATTAAAATGGCAGTTTGAAATTGCCGAAAGGATTTTTGCCTTTTTTGCCTTTTCCGCCCATGCCGCCGGACATTTGTTTCATCATTTTTTTCATTTCATTAAATTGTTTGAGGAGGCGGTTAACCTCTTGGATTGGGCGTCCGCTGCCTCTTGCAATTCGTTTTCTGCGGCTGGCGTTGATAATATCAGGATTGTCTTTTTCATTTTTAGTCATGGATTTAATGATGGCTTCGATATGTCCAAGTTGTTTATCGTCGACTTGCATATTATCGAGGCCTTTCATTTTGCCGGCGCCAGGTAGCATCTTCAGTAGCTCATCAAGCGGGCCCATTTGCTTCACTTGACCAAGTTGTTCTA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 37097-37924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPY010000013.1 Listeria fleischmannii strain FSL L7-1645 NODE_13_length_66189_cov_37.346004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37097 36 100.0 30 .................................... TGCGGACAGTCTACGTATTATGTGCAATAC 37163 36 100.0 30 .................................... ATGTATACTTACCTAACCCAGATTCACGGA 37229 36 100.0 30 .................................... TTTTGTTCCGTATTTTCCTTCTTTAACCAC 37295 36 100.0 30 .................................... CACTTACATTATCAACAACAATGTTGTCAT 37361 36 100.0 30 .................................... AAAGATTAGCATTTCCTGTGGAAGTGAGTA 37427 36 100.0 30 .................................... GTTGCATTCTCTATTTTCAAACAACTATTG 37493 36 100.0 30 .................................... ACCACCCCAAGCAAACGTATGCGGGACACC 37559 36 100.0 30 .................................... TTGTATGGGGTATTTAACTCCCACATTTTT 37625 36 100.0 30 .................................... AATTTATTAACCATATTAAACAAAGTAATT 37691 36 100.0 30 .................................... TACCATAACTATCCACCATGTTTCTTAGCG 37757 36 100.0 30 .................................... TACTTTCGCCGTGCTTCCCTCTTGTGATGT 37823 36 100.0 30 .................................... ACGAAACTAAGCGAGAAATTGTCACTGTGT 37889 36 88.9 0 .............................AC...TT | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.1 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : TAAAAATATTGATGATACACTAAGTTATCAGGAATATGAGGAAGTTATGAATTCCATGAAGCGACTTACCACTAAGCATCCTAACTTCTATTGTATGGTTTTCCCAAGTCAAATCGGATATGTTTACATTAGCGAGGAACATATTGAAAGTATATTAGTTGTAGGAGAAGAGGCACATTCGCTCGCGGATGGTCGTAATTTATATACACGTGTTTGCGCCTATTACCCAGATCAAACTATTCCTAGCTACAACGAATTTTTGGGGAGACTAAAAATGATTGCCCCTTATTTATTTACAAGCAAAAAACAAAGCATTCAAATGAATGTAAAAGAACTGGTTTTAATTAAAATCATTAATGAGCTATTCCAGTACTTTGACCTTATACCAGTAGCAGTATTACAACATAGTCAACTAGAGTATGATTTTTTATATGAAAGCTGATAGATTTTATGATAAACTAAAATAACAGTAGTTTTTAAAAATCTAAAACCAATTTGAG # Right flank : TATTAGATGTGATTGATCCTAATTTGAATAGTTTCATTGTTCTCAGATATTCTTATGATTTCATGTAAATAAAAAATGCTAGAGGCAGACTATTCGCTGCTTCTTTATTGTATCCAAATAACTATGTCTAAATAGAACTAAAGTCTATCCACTGTGTTCAAAAGCCTGATTTTATATAACTTTTTCTCTAATTAACCCCAAAAGTACTATTTTTGTCAGAAAGCTACTTTTTACTTTCTTTTTTTAGATTTACTCATTATATTTAAGTTATTCATCAAGAGTTTCTCTAATTAAGATAAGGGGGGATGTAGAATTCTGAAAAATTAATATCGTGTTTTGCCAAAGGAAGATGGTCGGTTTTTTGTAAATGTTGGGGGGACATAAGCAAATCGCAAAGGCAGGAAAGAAAAACATGAGAAACGCCCTTTCATTGATTTTCATTATTTCGCTTAAGGGATAAGCGATAGGGGGAAAAATGATGGGAAGAAAAAGTAAGGTGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //