Array 1 29961-28539 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUAB01000040.1 Bacillus sp. AFS014408 AFS014408_98_D11_Contig40_140514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 29960 33 100.0 33 ................................. TTATGAGAGAGCAAAAGAAAAAGGGATTATGTA 29894 33 97.0 33 ................................G TTATAGGAATGCAGAGTTAAGGGTAGAAAACAA 29828 33 97.0 34 ................................A ATCACAGGATAGAAAGAAAGTCGTTTCACGTGAA 29761 33 97.0 32 ................................C TCGGGTGGTTATGGTAGAAGTCCCCGGACAAG 29696 33 97.0 33 ................................G AATGGTATATGCAAGATGTATTGACCGCCAAAC 29630 33 97.0 32 ................................A GGAAGGAAATCTAATCGCTAAAAAAGATAATT 29565 33 97.0 34 ................................A TTACAAAATATTATTGACCGCGTAAGCGTTAAGG 29498 33 97.0 33 ................................C TGTCTTGCGGTAAGTTTTGGTCAAATACAAATA 29432 33 97.0 34 ................................G AATTGAGGGCGGTATGACGGTGGAAAACGCCGTT 29365 33 97.0 34 ................................C TGAAGCAACGTCACCTAAATTGTAATTCAATTGA 29298 33 100.0 32 ................................. ATGTATTTATACGCTATGTGGGGCTAGCCCCA 29233 33 100.0 33 ................................. ATGATCAAGACAAAAGGCAAAAAATAGATTGCT 29167 33 93.9 34 ....T...........................C TGACGATATCAAACTTGCTGTCTGCTACCTTACA 29100 33 100.0 34 ................................. GTCACATATCAATCATTCGCAACTTGGTTACACA 29033 33 97.0 33 ...............................T. TAACAAGAGCAGGCGGAACTGTAGATGGCTTAA 28967 33 93.9 32 ...............................TA TTTAAAAAGGAAAGAGATGAATTTAGGGAAAT 28902 33 87.9 33 ......T....T...................TC AAAAGGTGTACGTTTAGGAAGAACAATAACTGG 28836 33 93.9 34 .......T.......................T. GATTATAGCAAAAAAAAGGGACAGAAAACAAGTA 28769 33 84.8 34 ......T..T......A..............TG TAAAAGAAAATAATTTATGAAAACCGCCGCCCTT 28702 33 87.9 32 ......T.........A..............TA CAGCAAACTGTGCGCGCGCTGGTTGGGATAAA 28637 33 81.8 33 ......T....T....A..T...........TA CTACTGGTGTAGATGTATTGCAAAAATTAGTTA 28571 33 81.8 0 ..T...T.T.......A..............TC | ========== ====== ====== ====== ================================= ================================== ================== 22 33 94.4 33 GTCGCACCCCTCGTGGGTGCGTGGATTGAAACT # Left flank : | # Right flank : TAGCAGGAGAACCAGGATGGAACTGGAAAGGAAAACTCAAGATTATAACGGATACGATAGATTGGTATTACATGAAAAAAGGGAAATAAGAATATGAATTGTGCGTTTTGCTATTATGCGAAGCGGTATATATTGTATAATAAGATGAATGAATTAACTAAATATCCAGTATAACTAGTAGCTTAATGGACAAACCAAAGGCACACTCCTTAGTAGGAGTGTGCCTTTTTTGTTCTAAGAAAGGGGAAATAGCAATGGATAAGAAGAAAAAGAAACGTATAAAACGTACGATTTTATTGGGAGTTATAGCAATGATTGTATCTGTATACATAGGGAGCAAATTCGAGGATCAAAACGGAAAAAGATATGCACCAGCGCAATATTTTGAAGCAGGGACAAAGTTCGTTTCATTCTAGGGGGTTCTTGCTATATTTTCATTGAATATAGTCGATGGAATATACATGACATATACTATATTCAATGATATAATGTGTGTAGAA # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGTGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.60,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9365-9133 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUAB01000052.1 Bacillus sp. AFS014408 AFS014408_98_D11_Contig52_140514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 9364 33 100.0 34 ................................. AAATTAAACTCAATCATCGCAAAGCACTCCAAAT 9297 33 100.0 33 ................................. CGCCCGCAAGGTAACACTCGGCGCAAAAAGATT 9231 33 97.0 33 ................................C AGGTTAACGATATCATAGGTGCAATGCCAGGTA 9165 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ================================== ================== 4 33 98.5 34 GTCGCACCCCTCGTGGGTGCGTGGATTGAAATT # Left flank : | # Right flank : AATGCTAAATTAAATATCGAATCTTTAACTAGTAGCTTAATGGGCAAACCAACGGCGCACTCCTTAATAGGGGGGTGTCTTTTTTTGTCTAGAAAGGGGAAATTTAACGAGTTATCCGAAAGAATTCTCCTTCCTCAAGCAGGTGGGAGATGAATTTCGGTTTAGCGTAGCCAAAAAGCACTTAATTTTGCTTTTTATTTTTTGTTCAGATATAATCAGTCTTATAAATCATAAGGGTTGGTATAACAGTGAAATTAGATAATAATAACCATTCAGTGTTCCTATTGTATTATCACCTTGTATTAGTCGTGAAATACAGGAAAAATGTATTTGATGATGATATGTCAGAATATGCAAAAGACATGTTTGTACGGTTATCTGAGAAGTACAATATAACATTGGTAGAATGGAATCATGATGTTGACCATGTACATATCTTGTTCAAAGCACATCCTAATACAGAAATGACAAAGTTCATTAATGCATATAAGAGTGCAAGT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGTGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.60,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //