Array 1 91892-91268 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGB02000003.1 Clostridioides difficile strain WCHCD070133 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 91891 29 100.0 37 ............................. TTTATAAATCTTTTAATGACTGTTTCTGATGGAACAG 91825 29 100.0 37 ............................. GTGGATGTACCTCTTGCAATAACAAAACAAGATAAAA 91759 29 100.0 37 ............................. ATACACCTAATAAAACTAGAGATTATGAAGAACTAAT 91693 29 100.0 37 ............................. TTTGGCATATTAGACGATATAAATGGAAGGATACTTG 91627 29 100.0 36 ............................. AGCGTTCAATTGCGCAAGTAATGTTGTTGTGTCTAT 91562 29 100.0 39 ............................. ACAAGATTAATAAAAATAGTGGAGCTATAGAATTATCAA 91494 29 96.6 36 ............................G CAGCTAGAACTTTCAGCAACTGTGCGAGGTGTGTCT 91429 29 96.6 39 ............................G TTAGAAACCTTTCCGTCTAATAATAGTGCTAGATATTTG 91361 29 96.6 36 ............................G AGTTTATGATTTTTCATTGCATATTCAATAAAAAAT 91296 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 98.6 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTATTTAAACTATGCTTGTTCAGGTAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCACTGTATATAGATTACATTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTATATGATAAGTGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATATGTGTAAGTATTGAAAATACTAAGTTTATTTGGGG # Right flank : TTTTATAATTTTCTTTTAAGGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAGTCAAAAGGTAGTATAGAAATCTTATCACCTTTTTATTATTAATTTTATCAGTATTTTATTATAAATAGCTTATATAATTACATATTTTTTCTGATTAAATAATGTGATGCTATTGTTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCTAATCTTCTTATTTAATAAACTCATTTCTATATCTTCAAGTCCTATTAAATATTGATAAAATTTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAACTTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTATAAATTCCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTATGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8474-7783 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGB02000005.1 Clostridioides difficile strain WCHCD070133 5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 8473 29 100.0 40 ............................. TATTCTATAAATGTGGGAACAATAAATATATATGATGCAA 8404 29 100.0 36 ............................. TAAAGAAGGGTATTTCGTACTTTTACCACTTAAACT 8339 29 100.0 37 ............................. CAATAATAGATATGTATAGCTTCTTAGTTGGATTAAA 8273 29 100.0 36 ............................. TATGCAGATGGAAGTGGTTTTTTTATATGTGGAAAT 8208 29 100.0 37 ............................. ACCTTCTAAATATATCATCATTTTCTTCTATGCACTT 8142 29 100.0 36 ............................. TTTCTATGATTGTTTGAAATAGTTTAATTTTCATAT 8077 29 100.0 39 ............................. GGATTTTATAAATTAGAAGAGAAATATTCTACACGTATT 8009 29 100.0 37 ............................. TATGAAGATCTTGGTAGAATGATAGGAAAAGTTAATC 7943 29 96.6 37 ..............G.............. CTAAAATATCTTTCAACCTTTAACATTTCAGCCACCT 7877 29 93.1 37 ...............A............T AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 7811 29 69.0 0 ......C........AAAT....AG..TA | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 96.2 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTAAATATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTGTTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTATCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAACATACTAATGATAAATGTTTATCATTAGTATCTGTATATGCATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATGCTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1793-775 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGB02000058.1 Clostridioides difficile strain WCHCD070133 58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1792 29 100.0 36 ............................. AATTTTATGGAAGATGACCCAACTTTTAAAAATTAT 1727 29 100.0 37 ............................. TCCAAACATTTCTCACAAATTTCAATATTTTTTTATT 1661 29 100.0 38 ............................. GCGAGAGGCTTTTCAGCAACATACTTACGACGAGAAAC 1594 29 100.0 36 ............................. TTTTTAACAAGTTTTAGTTTCATAAAATCAACCTCC 1529 29 100.0 37 ............................. CTTTTCATTTCCACAATTCCCGCATTTACATAGACAA 1463 29 100.0 37 ............................. AAAATTATAATTTTAATTAAACAAACATTTTGAAAAG 1397 29 100.0 36 ............................. AGTACTGTTATTTCTTTATTTATATTTTCATTCATA 1332 29 100.0 37 ............................. CCTTTTGCACACTGTACAAAATCATAATAATTACCAC 1266 29 100.0 38 ............................. TATCTTAGTGAAATAGATTTAATTGAGTTAGCTCTTAA 1199 29 100.0 37 ............................. AAAGTACTTTTTGCTGATTCGGTAGCGTCTTCTGACA 1133 29 100.0 37 ............................. CCAACTAACTCTTCATAATTCATACTCGTTAACTTTG 1067 29 100.0 38 ............................. ATTGTAAAAGAATTAAAAATAGAATTAACAGAAGAACA 1000 29 100.0 36 ............................. ATCTATATGCATGGGCAACAGAAACATTGCCAGGGA 935 29 100.0 37 ............................. GCGAGGGAAGTTTTTCAAAAGAATTGTATAGTTGAAA 869 29 82.8 37 ......T........AG...T.......G ATAGATGCTCCCCAACATAAAATACCTTCAAAGACAG 803 29 86.2 0 ......T........AG...T........ | ========== ====== ====== ====== ============================= ====================================== ================== 16 29 98.1 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATACTAGGATAAAACCTACTTCCTAATGAAAGGAGGTGGGAAGTATGGACAACTTTTTACTTAGTATATTAGCTAGCTTGATAGCTAGTTTAATTGGATATATCGTTTGTAGATGTATCAAAAACGTAAAAAGCCACTCTACTCGTGGCAAGAGTAAAAGTGGCTGGGAACTTGATTTTAAAATAAAGTTCCGCAAATTTAAATAATTTATATTTTTTAAAATTATGAACTTCACTCTACCGCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGAGCAATATTTGTGATAAAATATGGCTTAACACTTGAAATATAAGGTGTTAAGGGTGTATGATAAGTGTTATCATTTGCATTACTCATGGTTCACTGCAAATTTGAGATAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGGG # Right flank : ACATTGTAGGTGGGTGGTGAAACACCACATACATTGTTTTATGTTCAAAACTAAATAGAAAAAAGGAAGCACTTACTTTTGGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAATTGGTAAAAACCTATTGCTTTATTGTACGTACTATATTATAATTTAAGTACGGACGATAAAAAGAGAGGTGATAAGATGTCCAATAAATTAGGCAGACCACCAAAAGAAAATTCCAAAAAATTAAGATTTGAAGTTAGACTTAACCAAGAACAAGCTGATATATTGAATGAATGTGCTGAGAATCTTAAAATATCTAAAACAGATGTAGTAATTAGAGGGATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACCAAAGCACTTTCGACTGTTTCCCAAAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 62556-61669 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGB02000007.1 Clostridioides difficile strain WCHCD070133 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 62555 29 100.0 37 ............................. CTGTACCAACCTCATAACCTATGTCTGGTAGATTAAG 62489 29 100.0 37 ............................. GCTAGTATACTCAATAAAAAGTTTATCACCATATTGT 62423 29 100.0 38 ............................. AAATTCTGTTGCATTTTGATTTTTGTTAGGCTCTATAT 62356 29 100.0 37 ............................. TTTGAAACACTGTCATGATTGCAAGATATTGTATCCG 62290 29 100.0 37 ............................. ACTACTGCATATTATTCAAAATATTCTGGATTTTTAT 62224 29 100.0 37 ............................. TCAATAACTTTATCAGAAACTTGACCATCCCAATCGT 62158 29 100.0 36 ............................. AAAGATTATCAGAAGAATTAATACAGACTGAATATG 62093 29 100.0 38 ............................. CGGAGTATTGTAATAAGCAATAAAAGCATACCTATTTG 62026 29 100.0 37 ............................. CTACTAAAATTATAAATACTATTTGATACTAAATTCT 61960 29 100.0 37 ............................. TGTTTATTATTTATAATATTTTCATTTAATTTATCTT 61894 29 100.0 37 ............................. AGTTTAACTTCTTTAGATTTAGCTGTTACTACTTTTA 61828 29 100.0 37 ............................. CTTATAGTAACGTCCATTAAATAGCTATCTTTTGCTC 61762 29 100.0 36 ............................. TTTATACCAACAATTTTCTTCTCCATACTTTTCCAT 61697 29 96.6 0 ..................T.......... | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.8 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATATGATGCTTACTGACATAAAACTGAACGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTCTTTATCCATATCGTCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAGAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATAACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATAAATATTCATACTATAATTTAGATATAAGGAGATGTCCTTATAAACTTAAAGGGTTTGTACTATTTGTACTATAAGTATTGATAATCTTAAAGTATATATACTATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATATTAAACAACACAAATATCAAAATTTAATATTGATATAGGTATAAACATTATAAAAACAACTGAAAATAAAAATCAAGAAATATTTAATGCTACTACAATAGGAACTAGAACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1764-726 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGB02000068.1 Clostridioides difficile strain WCHCD070133 68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1763 29 100.0 37 ............................. TATGTGTTTTTTGCTTAGTATCAAATCCTTTTGTTAG 1697 29 100.0 36 ............................. TCCTCTGCTCTTCACATTTAATAGACTTTCAAGCAA 1632 29 100.0 37 ............................. ATTTTTAAAGAATTTGCTTGGGATTTTGATAAAGATG 1566 29 100.0 37 ............................. GCTGTTACTGCTACTCTCATTTAAAGACCTTCTTTCT 1500 29 100.0 37 ............................. TATGTAAGCGGAGACAAAATAGAAGTTGATTATGTGC 1434 29 100.0 37 ............................. AAACTTTTAAAAGATTATGCTAGAAAAATTCATGTTG 1368 29 100.0 37 ............................. TTCATTGACCAAACAGTTTGCTTACATCTAAGAGAGA 1302 29 100.0 37 ............................. TAGCTTTCCTCCTAATTTTGATTATTTATTTTTTATA 1236 29 100.0 35 ............................. TAGTTTAAAGATTGCATTCTTATACCCGCTAGTTC 1172 29 100.0 37 ............................. ATATAAAAATCAAAGGTGAAAATGGGGATAATTTAGA 1106 29 100.0 31 ............................. CAATATTATTATTCAAATAACTTCACCTCTA 1041 29 100.0 3 ............................. TAT Deletion [1010] 1018 29 75.9 38 ..AAAT..........G...T.......G ATAGCAACTGGTAGCAACATAGCACTTATACTTGTAGC 951 29 86.2 38 A...............G...T.......G CCCATAGAACCAACATATTTAAATGTTTCACCCATTAG 884 29 82.8 36 A..............AG...T.......G AACTCTGCAAAGCTAGATTTTAAGTTATCAAAAACT 819 29 86.2 36 A..............AG...T........ TCTTTAAAAGCATTGAAAGCATCACTCATACATTGT 754 29 79.3 0 ...............AG....T.CA...C | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 94.7 34 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAAATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TAAATAAACAAAGGAAGCACTTACTTTTTGGTAGGTGCTTTTATTTTGCTCAAATTGGTCGGTTGAGTAAAATAATTAGGAAAAATTGGTATAAGTAATTGACTTTTGTTGCCACATAAATTATAATATATTTGTAGCAACGAAAGTGAGGTGAAATAAATGCCACAAAAAAAGATGGGTCGTCCAACAGAAAGTGTAAAAGATACTATGATTAGAGTAAGAGCTGACAAAGATACTATTGATAAGTTAGATGAATGTGTGAATTTATTAGATAGTAATCGTTCTGAAATAATAAGAAAAGGTATAGACAAAATATATGATGACCTAAAAAAATAACAAAAATAGAGTGTTCGCCCGACCAAGTTTGAACACTCTATTTAAACACCAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGAATTTACTATGAATGAATTAATGAATTTTGAAGGAAAAGAGATTGAA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [27-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 133678-133905 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGB02000008.1 Clostridioides difficile strain WCHCD070133 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 133678 29 100.0 38 ............................. TAAAAGCTCTCTAATTGCTTTTTTAAACTTCTTTTCAG 133745 29 100.0 37 ............................. AGTTTGATTATCTTCTCATCATTTGGTATAACATATA 133811 29 100.0 37 ............................. ACGAGTTGTCATGATGATGGAGACACAAGTTTTACAG 133877 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 38 TTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TTTATATGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGTTTTTTTATTAAGCATACTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAAAAATAATATTTTCACTTAACAACTGAAAATAATCACTCTTTGTAGGAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATATAGAAGCTTTGCAGTGAGCGGTATTTGTGATAAAATATGGCTTAACACTTGAAATGTAAGGCATTGAGAACATGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGTATAGATGTAAGTATTGAAAATACTCAATTTATTTTGGG # Right flank : TTTAAAACTAGCTCTTCTGTACTAACACATACATAAAGTGCTACTCTTAACAACATTTTACCTTCCCCCTTATTGTATATTTAAGAGCAGCTGAACGGCTCTTAAATATACTATGAATTGTTACAAAAAATTTGCATTCATAATACTAAATCTTGGCTCAAAAAATATCACATAATTATCTAGAGTGGCTGAAAAACCATATTTACTTTTATAACATTCTAAGGCTTCATTTAGAAACTTTTCAGTTACATCAAGGTATTCTGTCATTTCAGATATAGTCTTACAACCAGCATTAAAACTATCTATTATGCCTTTAAGACCAATTAACTTATTATAAGCCATTAATCTAGCTTTATATTCTTGTTTACTATTTTCAATTTTATTTAAGTCTAAAATATTGCCATATGAAGTATAATGATGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 30030-28358 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGB02000014.1 Clostridioides difficile strain WCHCD070133 14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 30029 29 100.0 37 ............................. TTATACTTAAATAATAAGTACATCAAGTTAACTTCTC 29963 29 100.0 36 ............................. TGATTTTACAGGACAAAAGTATTCTCTACATGATGA 29898 29 100.0 36 ............................. ACATCTTTTAAGCAGGAAGTACAAAATGATGTCAAT 29833 29 100.0 37 ............................. AAGTTAACAAGAGCTGAAGCAAATACAAGGATAAATA 29767 29 100.0 36 ............................. CAATTGGAACTTTCTGCATCTGTGCGAGGTGTGTCT 29702 29 100.0 37 ............................. TGATACAAATACTTTTTCTTTAACTCCAAGTTCTTTT 29636 29 100.0 37 ............................. AGAGTGAAGTTTCATTAACTAAATATTAATGTCGTTT 29570 29 100.0 37 ............................. TTTATTACATTTTTACTTTCAAAACTTGTAGCCATAT 29504 29 100.0 38 ............................. AAAGAAGTACAAAAGAAGCTTGAAACAATGTATAATGG 29437 29 100.0 37 ............................. TTATTGGCTGAATTTGATGGTTTTATGGATGATACTG 29371 29 100.0 36 ............................. TAAATAGCGGGTCGACTTAATTCTAATATATCAAGA 29306 29 100.0 38 ............................. TTCATTAAAATTACTAAAATCTAAACTAACCTTGTTAC 29239 29 100.0 36 ............................. CAAGCTATGAGTAAATTTATAGACTTTGCAAAAGAA 29174 29 100.0 36 ............................. CTAAATCGGTTCTCTTCTTCACAAGCACGAAAGACC 29109 29 100.0 36 ............................. CAAATATACAATTCCAGCTGCAAGACCTGCAACTGC 29044 29 100.0 38 ............................. GGTCTTACATTGGCTATAAGGTCACTTTCTACATTTTT 28977 29 96.6 36 ............................G CTTAATTTTTTAAGTTATTTGCAAGATATAAAACTA 28912 29 96.6 35 ............................G TCTTTTTTAAGATCGTTTATATTATCCATTGCAGT 28848 29 96.6 38 ............................G TTGAGAAGTATTCATTTTAAGTTTTTCTTTTAAATGTT 28781 29 96.6 37 ............................G ACACTTTCAAGTATTCTTTAAACTCTTTTAATGTAAC 28715 29 96.6 39 ............................G ATTGAAAGCAATCAAGTTTATCTTTCTTCTTATATAAAT 28647 29 96.6 37 ............................G GAAATTGTTAATGTTGTTACTACTCTTGCTGTTGCTA 28581 29 96.6 37 ............................G TTTTGAGTGTATGTTTCTTTTGTTTTATTATTTAAGA 28515 29 89.7 36 ......................GA...G. AGAATATTAGCAATATCAACGAGTGTTTAGAAACTT 28450 29 75.9 35 ............TA...CA....A...GA TTGTAGAATCAACAATAGCATATACTAAATCAGCA 28386 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================= ================== 26 29 96.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGGTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACAT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4828-4534 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGB02000018.1 Clostridioides difficile strain WCHCD070133 18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 4827 29 100.0 37 ............................. TCGAAGACCCTATCGCAAGAAATCAAGTTGGAGTCGC 4761 29 100.0 37 ............................. TGAAAATCTTTGTCTGAGTGTTAAATTCTCCATCTAC 4695 29 100.0 37 ............................. TTGTAATACCTATCACCTTGTAACTGCTCTTTTCTTG 4629 29 100.0 38 ............................. TGCGCTTGTCTTTGATTGGGTTAGCTGGCTTCTTACTA 4562 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 99.3 38 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATACTGAATAAGTCATCTTCTTTAAAATACAATAAATAGTATTTTGCTCAAATTTTCAGATGCTTCTCTGTCCATCTCTTCTAAAACATGAGAGTATCTATTCGTAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGCAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATACAGTTAAAAATTAATTGAAAATATTAATTATATGTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAACAGTTGAAATATAAGGCATTGAGAATATATGATAAGTATTATCAATTGCACTATTGCGCGCTCACTGCAATTTTAAGAGCATTGTATATGTGTAAAAATTGGAGATGCTAAGTTTATTTTGGG # Right flank : TTTTTATTACATTAAAAGCAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATAATTGTGTTAGATATGGATGAAAGTGGTAATGTATATAAAAAAGAGTTAGAACTTGGAGAATATGGGTTATTAGGCTGGACTAATGAAGAAATATTAAAAGATGTTATGGGTATAGAACCTAATTTTTTAAAATTATATCTGAAAGTGATTAGAAATTTTGAAGATGCTCTTATAAATGAAGATGCTGAAAAGTAAAAAAGAATTATGAAATTTTAGATAAAATGTTACATCCTAAAAATCATCTTAGAAAAATGTTGCAAATACAAATGGCAGGTTTTATGGAATGATAAAAATAGAAAGAAAACCTAAATCCAAACAATTAGCAGAAGAGTATAAAAAAACGTATGGAATAAAAAATATATATAAAATACACTTTTTGCCATGTCTAATGGAAAATGTTGCTAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 233389-233679 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGB02000002.1 Clostridioides difficile strain WCHCD070133 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 233389 29 100.0 37 ............................. CCTTTTTGCTTTGTCGTTAAGCTTAATTTAATTATAA 233455 29 100.0 37 ............................. GTTATTTGGCGAGGGAGACCAACTCGAACTGGTTGGT 233521 29 100.0 36 ............................. ATTATTACTTAACATAATCCTCGCAGTTCTAAGAAT 233586 29 100.0 36 ............................. TGTAACTTTTCCTTTTGACGCTTTCCCTGTGTCTTC 233651 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGATGAATATACATGGATAATTTTTTACAAGGTATACTAGCGAGTCTATCTGCTAGTTTAATAGTCTATATAACTAGCAAGTTATTTGGAAAACGTAAAAAACCACTCAAAGCTGCAACTAAGAGTGGTTGGGAGTTTGATTTTAAAATCAAATTCCGTAGATTTAAATAATTACAAATTGTTTAAATTATGAACTCCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATGTTTATGATATAATAAAAGTATATTATTTTTGCAGTGAGCGATATTTGTATTAAAATATGCTTTAACCGTTGAAATGTAAGGCATTGAGAATGTGTGATAAGTGTTATCAATTGCACTACTTGTGCTTCACTGCAAATTTAAGAGAGTTATGTAAGTGTAAGTATTGAAAATACTTAGTTTATTTTGGG # Right flank : TAAGAAATTGTTATGATAATGACTCTATAGAAAATTTCTTTGGTTATCTTAAAAGTGAAGAGATCTACTTAAATTTGTATACTTCAAGAAATGATTTAGAAACTGCTGTTCATAGCTATATACGTTGGTATAACTATGATAGATTACAATCTAAATTAAATAGCAGCACACCTGTAGAATATAAGCGTGCTGCTTAAAAATGACTATCTTATTAAAAACTGTCTACTAATTAGGGTTCAGTTCACATATAAGTGCTACCTTTTATTTTGTAGATAAAGTGTTTTACTGACATAAGTATTAAATTTACATTTTAAAATTATTTAAATATCAATAAATAATTAAATAGAAATTATTATAATTAACAATAGATTCCTTTTTCAAAGAAGTCTTTAATTTCATCAAGGTTATCAGTTTTTCCAAGTGCTAAGATAAGTTTTATTCTAGCTTTTTGACCTGGCAAGTCTCCACCAAATATACAGCCAAGATTTTTTAAATCTCTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //