Array 1 92290-90882 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSX010000024.1 Pseudomonas aeruginosa strain CCBH27678 NODE_24_length_92836_cov_9.791660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 92289 28 100.0 32 ............................ TATTTGGGAGTACATGCCGCCCAGGCTGGGCT 92229 28 100.0 32 ............................ TATCAGATAATCCGCGTCTTCAGCACTTAGTC 92169 28 100.0 32 ............................ AGGTTGCCGGAGTCTGCCGAACAGTTCTGGCC 92109 28 100.0 32 ............................ TCGATCCTGGGGCCGTTGTGGCCTCGCATAAT 92049 28 100.0 32 ............................ AAGGTTCGCCAATGTTCTACGACTGGATATCC 91989 28 100.0 32 ............................ AGGAGCTGCAACTTCTTCCGCCGCCGCTTGCT 91929 28 100.0 32 ............................ TGGAGCTTCGCAAGCCGCGTGTGCCGGACTTG 91869 28 100.0 32 ............................ GTAAGGTGGTGCCGTGTAGCAGTGCTCACCGC 91809 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 91749 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 91689 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 91629 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 91569 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 91509 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 91449 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 91389 28 100.0 32 ............................ TTCCACCCCGAGCAGTTCGATGTGCTCGAGGC 91329 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 91269 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 91209 28 100.0 32 ............................ AATGCGTGTCGAGCGTTGGTGCTGGGATGCCG 91149 28 100.0 32 ............................ AACCAGCGTGTCGACGCCGAGGCCCAGGCACG 91089 28 100.0 32 ............................ CTCGATGACGCATATCGCGAGGCGCTGGCCAA 91029 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 90969 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 90909 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 34045-36110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSX010000047.1 Pseudomonas aeruginosa strain CCBH27678 NODE_47_length_46635_cov_7.368689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34045 28 100.0 32 ............................ TCGCAGATGGGGGCAAGTTCTCGTTCGACAAC 34105 28 100.0 32 ............................ TATCAGATAATCCGCGTCTTCAGCACTTAGTC 34165 28 100.0 32 ............................ ACGGCGTTACGTTACCTGTGGCGGCCGCAGGC 34225 28 100.0 32 ............................ AGGTCCTGGGGCTTCTGCAAGTTGATGTGTGT 34285 28 100.0 32 ............................ GCCTGGACAACCTCTACGGCCTGACCACGCTC 34345 28 100.0 32 ............................ TGACCACGCTCGCGGACAACATGGCCGTCATC 34405 28 100.0 32 ............................ TTCCATGCTGAGGGTAGCTACAGCACGAAGTT 34465 28 100.0 32 ............................ AAGTCCCAGGGCCAGTTCAAGCACTCTGGGAA 34525 28 100.0 32 ............................ TGCCCGGGTTGCCCGGGGCTCTCCACAGAAAG 34585 28 100.0 32 ............................ ACGCAATGTGGTTAAAGCAGTCATCGAGTTCG 34645 28 100.0 32 ............................ AGCACAGCGCCTCGACGGTGTCGTTCTGGTGG 34705 28 100.0 32 ............................ TACGAGCAACACGCCAACTGCACCGAGGCCAG 34765 28 100.0 32 ............................ ACCAGGGCGCAGACGAAAGCAGAGAAGGCCAG 34825 28 100.0 32 ............................ TATGGGTCGGAGGAGGCTTCGTCATGCCTGAT 34885 28 100.0 32 ............................ ACACGAACTCGCCTGGATAGAAGACATGGCAT 34945 28 100.0 32 ............................ TTGATCAGTCTCAAGGTGTGAGATTCCGCCCC 35005 28 100.0 32 ............................ ATGTGGTAGTCGGTGATAACGAAGCAGTTCAG 35065 28 100.0 32 ............................ TGACTTGGGCGGCCCACGAGGCATGGTTGAAT 35125 28 96.4 32 ................A........... AACATCGACGGGTCGAACTGCTCCGGCACCTG 35185 28 100.0 32 ............................ TGGAATGACCGGGCCGTCGCTGAACAGTACTC 35245 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 35305 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGCCGGAAACCGAGGC 35365 28 100.0 32 ............................ TGGACGGCCGCAAGACAGTCACGCGGCGAGTG 35425 28 100.0 32 ............................ TTGTCCGTGCGCGGCGCCTTGGGCAGAGTGAA 35485 28 100.0 32 ............................ AAGACGAGTACCTGAAAGACACCACCGGCAAC 35545 28 100.0 32 ............................ ACGATGGCCGGGTGATCGGTATCCCTGATCAC 35605 28 100.0 32 ............................ ATCGCCGAGCTGGTGGAGCACTTCCAGAGCCC 35665 28 100.0 32 ............................ TGGCCGTCCCAGGCCTCTTGCGGTCTAGCCTC 35725 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 35785 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 35845 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 35905 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 35965 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 36024 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 36083 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 35 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGAGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46504-44635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSX010000047.1 Pseudomonas aeruginosa strain CCBH27678 NODE_47_length_46635_cov_7.368689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46503 28 100.0 32 ............................ ACTAAAAGACTCAGAAATCGTGCACGCCTTCC 46443 28 100.0 32 ............................ TGCAGACGATCAAGCCGGGTGCATCGAGTGAG 46383 28 100.0 32 ............................ AGGCGATGGCTGAAGTTCCGGCTGATGCTACT 46323 28 100.0 32 ............................ TATGCCAGCGGCAACAGCACGCGAGGCTTGAT 46263 28 100.0 32 ............................ CGCAGTAGTACCCCGATCAGTAACGGCATCAG 46203 28 100.0 32 ............................ AAGGACTACGTGTTCAGCAGTCTCGGCGGCGT 46143 28 100.0 32 ............................ AGGGGGACGGCCTGTCGGCCAGTCAGTACCGG 46083 28 100.0 32 ............................ TCTGGGAAACTGGTAATTCACATAGAGTGAAA 46023 28 100.0 32 ............................ TCGGTCGGGCTACGCCTAACGTAACGTCTGCA 45963 28 100.0 32 ............................ TCCAGGCTGCTGATGGCGTGTTCGAGGAAGGC 45903 28 100.0 32 ............................ TGGATGTTGGTGGCGCCGTCCAGGGTGTAGGC 45843 28 100.0 32 ............................ TGCGAGTCCAGAACCAGGTCGATGCCGACGGT 45783 28 100.0 32 ............................ TCTCCGAGAAAATCATGACCAGCAGACGACGA 45723 28 100.0 32 ............................ GGCACCTTCAACAAGCAGCTCGCCGCGCTGAA 45663 28 100.0 32 ............................ TTGTCGTAGTAGGTGCTGACGCCACGGACCTT 45603 28 100.0 32 ............................ TCGGGCCATATCGTCGACGCCGACACCCGCAT 45543 28 100.0 32 ............................ TGGCGTAGGCGACGAGACTGTCCAATGGCCGC 45483 28 100.0 32 ............................ TCCATGTCCATGAACAACTCGGCCTGAGCCTG 45423 28 100.0 32 ............................ TGCCGCAGCGCCTGGCCCAGCCCGCTATGGTG 45363 28 100.0 32 ............................ ACAGGTCACAATGCGAACTGAACATCACACTC 45303 28 100.0 32 ............................ GGGACGAACATGCGCCGGAGATCGCAGCCACT 45243 28 100.0 32 ............................ GAACGGATCATCGGGTACCTCTACGAAACCTG 45183 28 100.0 32 ............................ TGGGCGATCGAGCACGGCATCACGCGCGAGAC 45123 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 45062 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 45002 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 44942 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 44882 28 100.0 32 ............................ AGCCTGCCGGCCCAGGACATGCAAAACCAGGC 44822 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCGAGTCAG 44762 28 85.7 8 ...................C..GT.G.. CCGCACGT CCTT [44737] Deletion [44727] 44722 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 44662 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.6 31 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //