Array 1 6726-4840 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKMT01000016.1 Listeria monocytogenes strain NRRL B-33182 PROKKA_contig000016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6725 36 100.0 30 .................................... GTGGCCGAGTGTATTGTCCATTCTGTTTAA 6659 36 100.0 30 .................................... TAGTCCCTTCCGCGAAGCGAGGGACGCTCC 6593 36 100.0 30 .................................... ACTTCGCCAAAGGTGAACGGCATACCTATC 6527 36 100.0 30 .................................... TTGTAGACGTCAATAATCGTTTTACAAAAG 6461 36 100.0 30 .................................... CACACCAATTGCGCTCGATGCTGTCGCGTT 6395 36 100.0 30 .................................... TATTATATGGTATGAATATAGGGGGATATA 6329 36 100.0 30 .................................... AAGCACGAGTAACTCTACCTGTACCTATAT 6263 36 100.0 30 .................................... TGAGTCCTTGTTAGAAGAATGGTACCCAGA 6197 36 100.0 30 .................................... AATGAAAGAAAAACAGATTGTAAAAGAGTA 6131 36 100.0 30 .................................... ACAAGACTCATTTATCGATAGCTTTAAATA 6065 36 100.0 30 .................................... TCGAAATTAGAAAGAATGACCGCGATTTCC 5999 36 100.0 30 .................................... AAACGTTGCTAGTCGTAGCCCTGTTTATTT 5933 36 100.0 30 .................................... TATCGCTATTGATATTATGACTGACCCAAA 5867 36 100.0 30 .................................... ATATCCATTTTGGCTTTACGTGCTTCATAT 5801 36 100.0 31 .................................... ATCAGATATTTGGCATATCCAACCCGAAACT 5734 36 100.0 31 .................................... TTGCAAAAGATTTTCAACCACAAAGAGCCTA 5667 36 100.0 30 .................................... GACTCAATTTCTATTACGTGATGTTGTTGA 5601 36 100.0 30 .................................... GCTGCCGTTCGAGGAAAGAATAAAAGTGTC 5535 36 100.0 30 .................................... CGTTAGAAATTCATTCAGTCGTTCTTCTGT 5469 36 100.0 30 .................................... TGTTGCTGCTGGTGATGTGACGGTCAACAC 5403 36 100.0 30 .................................... GAAGAACTCAATTTTGAAAGTGGTCGCAAC 5337 36 100.0 30 .................................... TATCCGTTTTTAAATCCTTACTTGTATCTT 5271 36 100.0 30 .................................... TTTTAAGCCTGTGTATTGACCAACCGTTTC 5205 36 100.0 30 .................................... AGTTCGCATTGATCCATCTAGCTTGAAAAA 5139 36 100.0 30 .................................... GAACAGCGGTAAAATTAAATGGTATTCACC 5073 36 100.0 30 .................................... TCCAAATAACGAATCTGAACGTGAGAAAGC 5007 36 100.0 30 .................................... AGAAGCTAAAAGAAACCTTGCAAGATTATC 4941 36 100.0 30 .................................... TGATAAAGATGTGGCTGGCACTGTTAATAA 4875 36 75.0 0 .........................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAAAAAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACAATGAAAAAAACTTCAATCATTTTTATTTTTTGCGTACTCCTGCTAACCGCTTGCTCAACCGCTACAAAAGAAATCCCTAGACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCAGTTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCACGACGAAACGGGAAACAAAATAAAACGAACCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGATTTCCCAATTCAAGAAACCTCACCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCCTGCTAAACAAATAAAACTCTCTCGTCCGCAGAGAGTTTTTTCTTTTCTCAAAAAAATAAACTCAAATTCCTTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 25950-26435 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKMT01000018.1 Listeria monocytogenes strain NRRL B-33182 PROKKA_contig000018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 25950 29 100.0 36 ............................. CCATTAATCCGCGTGCGGTATTGTATTTAAATTCAA 26015 29 100.0 36 ............................. GTTTTGACAAATTAATTTTTAGAAAGGGGTCTTTAT 26080 29 100.0 39 ............................. AATATGGGGTAGACTTGAAAATTACTGTTTGCCAAGGAA 26148 29 100.0 34 ............................. GCGGTCATATCTAATTGAATGGACCTTACACCTT 26211 29 100.0 36 ............................. TTGCTCACAAAAATGGATTTTAAATCGTCGCCATTC 26276 29 100.0 36 ............................. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 26341 29 96.6 37 ..............A.............. AATCGTCACGATGGGAAAGTCGTTGATAGCGCGCCAC 26407 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 97.4 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCATTCAGATTTAACTCCACCACCATCCACCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATTCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGTTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //