Array 1 473668-473891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063071.1 Listeria seeligeri strain Sr73 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 473668 29 100.0 36 ............................. TCAGATTGATTATAATAGATTGTCCGTTTTTCTGTT 473733 29 100.0 35 ............................. TTAAACATGATTCGTAAAACGGCGATTGTTAACGC 473797 29 100.0 37 ............................. CCAGGACTAGGTGCAACTGTTGCCATTGCAACGTTTG 473863 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 100.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCACTCCGTTATGGCTGGAAACGCTACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCTTTAGTAGTGTAGAAAACAAGGAGAATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAAGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : TTTGAGTTTAAGGTTACGTTCCTTTTTACTAGCTGCGATAACACCCATTCCCCGTCATAACAGGAAAAAATACTAGGAGATGATGCTTTGATTATTGACGTTCTACAACATGTGCCGCACGAAGGACCAGGACTTATTACGAAATGGGCGAAAGAAAATCAACATCAATTGAAAGTTCATAGTTTATTTAATGAAAAAGATCAAGTTCCAACTGATTCGGAATTTTTAATCATTCTAGGAGGACCAATGGGAGTGAGTGATACCGCTGAATTTCCATGGTTAGAAGAAGAACGAAACTTGATAAAACAACTAATAGAGCAAGAAAAACCAGTTTTTGGTGTATGTCTTGGAGCGCAACAAATTGCGACAGCGCTAGGAAGTACTATTTCGATGAATAGTGAAAAAGAAGTAGGCTGGTTCCCAGTTAACAGAATCTCCACTGAACTATCATTTTTTCCAGAGCGACTAGATGTTTTTCACTGGCATCAAGAGACTTTTTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 479453-479935 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063071.1 Listeria seeligeri strain Sr73 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 479453 29 96.6 34 .......C..................... AAAGCCGAATAGGCTTATTTTTTTACGACAAATA 479516 29 100.0 37 ............................. CCCGGATAGCAATATTGTCCGTGACGCTTTGAATTAT 479582 29 100.0 35 ............................. TCGTTCTGTTCAGCGTGTCAATACTCGACTTGAGC 479646 29 100.0 35 ............................. TAGCATTTGCTTTAGTTAGTAAATTTTGCTGAAGA 479710 29 100.0 37 ............................. ACTACTGATTGCGCCTTCATGGTATGATCGTATAAAG 479776 29 100.0 36 ............................. CCTGTCCCACCGACGACGAGCGCATGCGGATTAGCA 479841 29 100.0 37 ............................. GTGATCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 479907 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 96.1 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCATAGATAGTAAGCGTTTACAAATTTGCGCAATTTCTGTCGATGTATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAAAGTGGGGGATATTTGGGTTTTGAATAGTAATATTAGGAAGTTAAAAAGTCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCACCCACCCTCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACATAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCAGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAATCACTTGATAGCGAAAAAGCACCAGGATTATTCACTTGGTGGAGCGGGAAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 2629611-2628123 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063071.1 Listeria seeligeri strain Sr73 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2629610 36 100.0 30 .................................... ATTATATCGACGTCAATTATCGACCCGATG 2629544 36 100.0 30 .................................... TATCAATTGATGGAGGTATAATAAAATGGC 2629478 36 100.0 30 .................................... GTCTGTTACAACATCAACATTAGAACAATT 2629412 36 100.0 30 .................................... CTAAACTTTCCTTTGATGTAGCATGTAAAG 2629346 36 100.0 30 .................................... TATGTGTTCAATGTTACTTTTATATCTGAA 2629280 36 100.0 30 .................................... CATATCAATAGGCTCTGGCTCAAGTTCATC 2629214 36 100.0 30 .................................... ATGTTTTTGAGGTTAGCAGTGGTGCGTTAA 2629148 36 100.0 30 .................................... TCATCACTTTGCCAAGTTTGCCCATCCAGT 2629082 36 100.0 30 .................................... GACGAGCCAGCACTAAAAGACGTGAATATT 2629016 36 100.0 30 .................................... TATTGTAATTCCTGCTATTTTATATAATTC 2628950 36 100.0 30 .................................... CCTCGTCATCTAATTAGTGACGCGCATGAA 2628884 36 100.0 30 .................................... AAGATGGTAGTTTCTCAATGCCATATCCGT 2628818 36 100.0 30 .................................... GAGAATAAGAGGGATTTAGAATATAGTATC 2628752 36 100.0 30 .................................... AAAAGGCTTTGGTTATGTCGATTCTGGAAA 2628686 36 100.0 30 .................................... AGAACGTCTGTGAATCGCTCTCCGTGGCTC 2628620 36 100.0 30 .................................... TATTTCGAAGTAATCGGCAATAGCGTATGC 2628554 36 100.0 30 .................................... AAGACCGGGAATAAGGTACAAGTCAAGGCG 2628488 36 100.0 30 .................................... GATAATCGCTGTATTTGCAAACAGTTAGTA 2628422 36 100.0 30 .................................... AAAGGCGAGACAATATTAACTAATTCGACC 2628356 36 100.0 30 .................................... CAGGGACTTAGTGCCGAAGATATCACCTCC 2628290 36 100.0 30 .................................... AAAAAAATGGCCGTGCTGTTGCTGGACTGC 2628224 36 100.0 30 .................................... CGATTTTTCCTCAAAAATGAGTAACCATCC 2628158 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGAGAGAGTGAACTACAAAAGTAATATCCTTTACATCTATTTTTTTCTATATTTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTTTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAGGAATTCTCAAATCCATTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCAATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGTATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTTTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //