Array 1 151934-149952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSPH010000002.1 Salmonella enterica strain 62 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151933 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 151872 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 151811 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 151750 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 151689 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 151628 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 151567 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 151506 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 151445 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 151384 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 151323 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 151262 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 151201 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 151140 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 151079 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 151018 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 150957 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 150896 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 150835 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 150774 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 150713 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 150652 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 150591 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 150530 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 150469 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 150408 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 150347 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 150286 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 150225 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 150164 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 150103 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 150042 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 149981 29 100.0 0 ............................. | A [149954] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 171669-169566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSPH010000002.1 Salmonella enterica strain 62 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171668 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 171607 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 171546 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 171485 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 171423 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 171362 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 171301 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 171240 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 171179 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 171118 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 171057 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 170996 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 170935 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 170874 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 170813 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 170752 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 170691 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 170630 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 170569 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 170508 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 170447 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 170386 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 170325 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 170264 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 170203 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 170142 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 170081 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 170020 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 169959 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 169898 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 169837 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 169776 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 169715 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 169654 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 169593 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //