Array 1 13173-12286 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTT010000029.1 Megasphaera sp. D52t1_170925_H4 NODE_29_length_22531_cov_61.2439, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 13172 31 87.5 33 ......-......T................GA TATTTCATCTACTTCAAATTCTTCGATGGGTAA 13108 31 87.5 34 ...AT......-.T.................. GTCTATGATTACGATATTTGCGTAGACGATAAGA 13043 32 96.9 34 ...................T............ GACGGCGTGCCTACCAGCGGCAGTAATAATCCTG C [13037] 12976 32 100.0 33 ................................ ATACCACGTTACCTCGAAACTATCTAGGTACAT G [12962] 12910 32 100.0 34 ................................ TCCGTCGTAAAGAAAAACAACGACAAAGAAGTCC A [12895] 12843 32 100.0 34 ................................ TGGGGAATAATTAACAGCTCGTATGTAATCGTAG G [12829] 12776 32 96.9 33 ...A............................ CTGTACGTTAATCATTTCGGTCCCTCACCACAT A [12759] 12710 32 93.8 33 ...........C.T.................. TGTCGCCATCGTGTCCTCCTACTTCAAAAAAGA 12645 32 90.6 34 ...........CAT.................. GTTTTGGAAAGTATCCGGAGACCGCCGGAATCTG 12579 32 90.6 34 ....T......C.T.................. GTTTTGGAAAGTATCCGGAGACCGCCGGAATCTG 12513 32 90.6 34 ....T......C.T.................. GTTTTGGAAAGTATCCGGAGACCGCCGGAATCTG 12447 32 90.6 33 ....T......C.T.................. CGATCATTTCGATGGGTCCGCGGTGTAGTGTAT 12382 31 93.8 34 ...........C.-.................. GAGGTGGAAATCAGCCTTTCGACCGCATCCCATT 12317 32 87.5 0 ...........C.T......A..A........ | ========== ====== ====== ====== ================================ ================================== ================== 14 32 93.3 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAC # Left flank : ATGTCGGGATACCTAAATCAGCAAAAATCGTTTCTGCCTGACGCTTCAAATCGGCGTCGACACGGAGATTTAATGTTTTTGTTTCAGCCATGTGAATCAGCTCCTTTCACAACCATTATAAAGATAGATGAGGAAAATGTAAAGTAATTAACGTTACGTTGTAGTGATGATAGTGGTGAAAACTATTTTCCTTATTTATGTTTGTTGGGGGAAGGCTTTTCTGCCTTTTGAGGTTGATTGTATAAAAATGTCGCCTAAATAAAAAAAGTCCCCTAAATAAAATAGTCCCCGGATCCGGCACATTTCCTATAACGGGACGGCTTACTACCAGGGACGCTATTAACGATGCTGCTGTATTATATGGATTTAAAAGGGAAATGTCAATACACAGGGATGGAATCGTTAACAGCTTTATAGATGGAGGAAGGAAAGTTATTTATGCCATTATGGTTTGAAATGGTGATATAATAAAAGTAAAGAATGTAAAACGTCCTTTTGTT # Right flank : GCGCCAGACTTAGGATCTGGCGTCTTATTTGTAGTCGCATTATAAAGAGGGCCTGCATTAAATCTTATCTTGCAACGGCGCTTTTTTTCTTATTTTTCAACTTTTCTTCTCGTTCCGCCTTTCGTTGACAGTCATCTGTTTCTCATGCTATAGTAAGAACGATATAATATAAGTAATAGGTCAGGTGTCACAGACTTAATAGAGAAGCCGGTTCAACGCCGGCGCGGTCCCGCCGCTGTAAGGTGGAGCCAGGCTGCAAGGATGTCACTGTACTTTTGTATGGGAAGGCGCAGCTTTGGCCATGAAACCAAGCCAGAAGAACTGCCTGACGGATAATCACCGATAGACCTGCGAGCGATGGGAAGGAGATTGTACGGAGCATATTCGGGGACTGTCGTCTATACGACGGTCCCTTTATCTTTGTATGTCCTTCTCCCGCAGGTGTGCTACAGGAAGGGGATAATACTTACGATGGAAGCAATCATTCACGGTTTTCAGTT # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAC # Alternate repeat : GTCGTACCCTTCGTGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 15202-14242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTT010000029.1 Megasphaera sp. D52t1_170925_H4 NODE_29_length_22531_cov_61.2439, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 15201 31 100.0 35 ............................... GAATGGCACGATGCAAGAACGAACACACCTACGTG 15135 31 100.0 36 ............................... AGATTCCAGCCGAACCCGCTTCAGACGACGAAGGAG 15068 31 100.0 35 ............................... AGTTATATCGTTTAAATCGGTGCCCGCATCAATAG 15002 31 100.0 35 ............................... ATTTCGTCGCTCGTGTCTGAAACGTTGAATGCGAG 14936 31 100.0 35 ............................... GGCGATAAACTTACAGCATTACATAATAACGTTTG 14870 31 100.0 36 ............................... ACCTTATTTTCGCGCAAAAAAGATGTCAAAGTTTCG 14803 31 100.0 36 ............................... ATTTTTTAATCTGATTGTTCCTATTATGGAACAAAG 14736 31 100.0 37 ............................... TTGATGACCAGAATCGTGTTCCGGACGTCCTCACACG 14668 31 100.0 36 ............................... GCACCCAGGACGATAGATTCTGGCGACGGCTGCCCG 14601 31 100.0 36 ............................... TTCATCTAAAATTTCCGACACGCTTACACCGTCTAG 14534 31 100.0 35 ............................... GACAGCGACATGGGGCTTGACCTACTGGGAAGATG 14468 31 100.0 35 ............................... TCAGTATCACTATATTCAGTTTCACTATACTCAGG 14402 31 100.0 35 ............................... CAGTTTCCGTAAAATCCGGCAGCTGAAGTGATTCG 14336 31 93.5 33 .......................C.....C. AGTGCGCCCACACTGCCGTTATAGCTACAAACG T [14310] 14271 30 74.2 0 .T.......T.T-...C......T...GG.. | ========== ====== ====== ====== =============================== ===================================== ================== 15 31 97.8 35 TCGCACCCCGTGAGGGTGCGTGGATTGAAAC # Left flank : CGACCCGAAGGCAGCATTGAAATGACGAAATTCTATTGGGTCCGCCATGACAATAAAACGGGCAACGCCTCGTCAGCTCGCGTCCATCACAGCATCACGACCAGCTTAAAAGAAGGCGTCACGTCACCGCATATCTTTGACGACTACGTCATCGACGACAGCGCTTTGAAAAATATCGAAGGCCTCAGTATTGAAATCTACCAAGAAGGCGAAAAAATACAGTAAATAACTACTTATAAGGGTAGTCAGATTTTGGATTTGTTCGACTAATATGATGTCATATGGATACGATATATGTCGAAAGTCATGAATTGAAACCTGTGTAAAAACAGCTTTATGTAGTGCGAAGGTATAGTGAACATCATATTAGTCGTCAGAATCCTTAAGCAAAATATAAAAAATTTGATGAAATCCCTAAATTTAGTAAGAATAAACCGTATCTGTGGGAATATATTCCCATAGGTACAAGCAAAAGTGACTGCAAAAAAGCCCTTTTGCTG # Right flank : TTGGTGCCGAGGGAGGGACTTGAACCTTCACTGTGAGTGCGTAGCGTGAAACGACATACTAAAAACAGAATGGACGAGAGCGAGAAAAACTCACTCACGTCCATTCTGTTTTGTTGCAATGATTAGAATAGCTCACTGTGACTCCCGGTTCGGGTCAAGGTTAATATCAGGATATCCTCTTCTACCTTGTAGATCAGCAGCCAATCAGGCAAAATGTGGCACTCACGGAAGTCGGCATAGTTGCCGGATAAGGCATGGTCACGATACTTCTCTGGGAGTGGTTGCTCTTGGACGAGATAGTCAAGCACTTCCTGCAACAGCTCCGGTGTATGCCCGGGTTGCTTTAACACGCGCTTGTAATCCTTTCGGAACTGTTTGCGGAAGCGGATTTTAAGCATTTAGTGCCTCCATGGCATCTTTAACCGAATCATAGGTTTTGCTGAGATTGCGATGATGATTTACGTCGTCAATGGCTCTCAGGGTCTCAAGTTCATTGGGGG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGAGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16482-16813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTT010000030.1 Megasphaera sp. D52t1_170925_H4 NODE_30_length_19069_cov_65.6483, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 16482 36 100.0 40 .................................... CAGCCATCCAGTTAGCATAGCGGGAAGCTTTTTTAGCGAG 16558 36 100.0 38 .................................... TGTCTCGTTAAACCACTGTCCATATTTTTTAATATTTT 16632 36 100.0 36 .................................... CCGAGTCCGCGTCATGAAGAACCATGCGCAACTGGT 16704 36 97.2 38 .................................A.. GCCGTACTGGATTTATTGTGGGCAAGCTGACCTTGTTC 16778 36 91.7 0 ...........C......T..............A.. | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 97.8 38 GTCGCATTACCAAATTCCCCGTAAGGGGACTGAGAC # Left flank : GGCCCTTACCGGCGACGTCCTGCACCTCCCAAACTTCGTCGGCATCGCCCTCATTATTGGATCCCAGTGGCTCATCGGAAAATGCCGACACCAACCATAATACCTTCAGACATAAATCGCGTCTCATCGTGGAAAATACTTAAGAACCTTAACCCCGAAGTGGCTGTGGCTACTATCGGGGAGTGTTTTTGCTTATGAGTTTATCTTTGGTAGAGACGTCTGTTTGACCTATGCGATGGCGGTTGTTTGACAGCGCTAAAGGAAAAACGTATACTAAAGAAAAGTCAAAGTAATGCGACGGCTTTGGAAAACCGATTTTAGGGGCAAAAACCCCGTAGGTTTGAAAATTTCCAAAAGCCTTACAAACGGCATGGTTGTGCGACGAAAACTCGATTTCAATTTTGAGTTTTAACCCAGGTCCCCGAAAAAGGCGAAAAAAGCCCGAGGTTTGAAAAAATCGCCTGTGGGCCCGCTCCCAGAGCGGGTACTGGGAGACAGAG # Right flank : CTTGTTGTTATTCAGTAATACCAGAACGCCGGTTTTCTTGTCGCATTACCCATTTCCCCCGGGTTTAATATGCTCCTTTTCAAAAAAGAGGTAATCAATAGGGGGACGGAAAGTCCGAAGGCTTTTGTTTCTAGAATAAGGAATGAAAAAAAGTCGATACAGGCATCCATTTGTGATGTCTTGTATCGACTTTTTGTTGTCTATGAGAGCTATAAGCGGGACGTAGGACGAGGTTTATATCCTTTATGGGGTGGAAGAAGGGCGATAATACGGGACTTTAAAGATAAAACGAATCTTTGAGAAATGGCTTTCTAAGGCGGTGTACCGGCTTTTGTGAGGCGCTTTTTTAGGCAGGTGTAACGCGTTACCTTATAAGAAGAGAAGAAAAGAAGAGAATAGAAATAGAAAAGACAAGATATAAAAAAGATAAGACATAGAAAATATAAAGAGATAAGAGTATAAGTAGATATAATATTTTTTTGTTTTTAAATTCATGATTT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTACCAAATTCCCCGTAAGGGGACTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2721-5200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTT010000026.1 Megasphaera sp. D52t1_170925_H4 NODE_26_length_23783_cov_63.796, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2721 32 100.0 35 ................................ TTTATGACGACGTATGGAACGACCGAGAAGACCCA 2788 32 100.0 34 ................................ GTGCCGATGATCGAGGGGCGTTCTTCTGTCGGGC 2854 32 100.0 34 ................................ GTAGCAACTCCGTATCATGTTTCTATGGTATAAT 2920 32 100.0 33 ................................ GAAGGCGGCGATAGGAGACTGCAAAGCCTTAAC 2985 32 100.0 35 ................................ ATATCCGAGGCCGAGCATATGAAGGCCCAGAACGA 3052 32 100.0 34 ................................ ATCAACCGCGGCGACCAACTGCCGCGCATCTTTA 3118 32 100.0 35 ................................ TCGTTATCGGCATGACAGTTTATATGTCAAAAGAG 3185 32 100.0 36 ................................ GTTTTTTCCGAACACGGTCGCCGATCAGAGCGTCGA 3253 32 100.0 34 ................................ GCCCATGTCAACCAACTCCCGGACGATATTACTC 3319 32 100.0 34 ................................ TAGTATGATTTCATCCGATGGTATCCTAATCATA 3385 32 100.0 34 ................................ GACGCGGGCAGTTACAAGGCTATCAATTTGAGCG 3451 32 100.0 33 ................................ GAATGATATCTTGTTTGATCGATTACGCCGGCT 3516 32 100.0 35 ................................ AAAATTACCCGGTTTGCCCTCTAACTCTAAAGCAA 3583 32 100.0 35 ................................ GAGTATGTTGCCATATACTGCTGGAAACGGATGTA 3650 32 100.0 34 ................................ ATGTTTGACTGGGCGAAGTCGCTTAACTGGACGA 3716 32 100.0 34 ................................ TATTATCCTCCTATTCGACTTTTATACCATACCC 3782 32 100.0 34 ................................ GATTTGGTTGAAATAATACGCAATTTAGGAGATA 3848 32 100.0 34 ................................ GTTGCTGGATGCAATCAGCCAATACAATGCCTTG 3914 32 100.0 34 ................................ TTTTCGGATCATACGTTAATACGTTAGACATTAA 3980 32 100.0 34 ................................ CTCGATCAAGTACAGCGGACTTGCGATAATCATC 4046 32 96.9 35 .............T.................. GGTTATATAGGCCTCGATCATTTGTTTTTGCTCAA 4113 32 96.9 34 .............T.................. ATATAATCGCATGTAAGGAGATGTGTATATATGA 4179 32 96.9 33 .............T.................. ATCGTATTCACCCAGGACATAACGGCGCTGGTA 4244 32 96.9 34 .............T.................. GTGCTGGCGGTATCCGTGACAGACGGCGCGTTGG 4310 32 96.9 35 .............T.................. TATATCTTCGATTGCCGATTGAATTTGATCTTCAC 4377 32 96.9 34 .............T.................. AACTTCGCTGGAAGAAACGTATGCTGTCCCGTTT 4443 32 96.9 34 .............T.................. GCGACTATATTACAAACGGCCATTGCTCATAGAG 4509 32 96.9 34 .............T.................. AGTACGCGGATTGTCGGACTTCATCATAGCGATC 4575 32 96.9 34 .............T.................. TTGGATATCCTTACACGTGCTTGATTGTTATAAC 4641 32 96.9 33 .............T.................. AACTTAGGGTTGACTAAATAACATGGGTGCCGT 4706 32 96.9 34 .............T.................. AGCGTCCCAGCAAGGGTTATGCAGCGTATACAAG 4772 32 96.9 35 .............T.................. GGAAGGCAGCGCACGGTATAAACAAGTAAATCAAG 4839 32 100.0 32 ................................ TCTTCAAAAATTAAAGCCCCGGAAATGGTCAA 4903 32 96.9 35 ..................A............. GGGAAATTACGCGGCATTATCAAGTGGAAATCAAC 4970 32 93.8 34 ............................T..T GGAACCTACAATCCGCCTCGGTCGAAGAATAACT 5036 32 90.6 34 ..........CA.T.................. GAAAAAGGCCCAATGAAACCGTTTTCGAATGTCA 5102 32 96.9 34 .............T.................. CACGCCGACACAGTTAACTACTGTTGCGCTCGTA 5168 31 81.2 0 .....-....A........AA....C..T... | C,A [5178,5184] ========== ====== ====== ====== ================================ ==================================== ================== 38 32 98.0 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Left flank : AGTTTATATAGCCTTGAGATGAGACTCTATTTTCAGTGGGTAAGGTGTCAACCATAGGAAGGTGAAGCAGATGAAGAAGATGAAAATAAGTCGGATTATCGGTTTTGGTTTTGGATTTATGCTCCCGAAGATATTAAAACCGGCGATAAAAATTGCCGTGATTTTGGGAATTGGGTATTTAAGCACGAGAGGTTATAAGCAACAAAAAGAGCAACTTGAGATGAATAATGAGTGAGATCTTGAATAAGAAGTCGACGGATTCCAGGCTGACTGACTAATGGAATACCCTATAAAATTTATGGTGGAGTCACAAAAACGCGCCAGGGTAAAAGTAAGGATCGGAAGTGCGAAGAGATAGTGAACATCTTCTTCGCTGCCAAAATACTTGATTGAAATATAAAAATTTTGATCAAATCCCTAAAGTAGTAAGAAGAAAGTGTATAAGTGGGGCCATATCCCCATCGATACACGCAAAAGAGACTGTAAAAAGTCCTTTTGCT # Right flank : CAAGGCGCAAAAATGCCCTCTCTACATCGGTAGGGAGGGCATTTCTATTGTCGTATTAGTCCTTGAAGTAAGGCTTGAATACGGAACGGTTCGGTTCTTTATGTTGTTTTTTTTCGGAGCGTTGGTTGTTGCGGAAGGTGCCGTGGTTGTTGGAATCGCGGTTTTTCGGTGCGAAGTGACGACGGCGTTCGCCTCGTTCTTGACCATCTTCTTTACCGTTGCGGCGATCTTTCCGATTGCGGTCGTTACGGCGATAGTTGCGGTCGCGGTTATTTTTGCCTTGGCGGCTGCGATGGACGCGGAGCGGGGCTTCTTCAGTAATCTTGACGGGCGTCGTGTCCGGTTCTTTGGTGAGCAGCTTGATAGCGGCTGCGATGAGGGACGCCGAGTCGTAGTTAGCCAGGAGTTCTTCGGCATTTTCTTTGTAGCTTCCGAAGTTACCTTCTTCTGCAGCAGCGGCGAGGTTGCGGATAGCGGCCTGCTGTGCGCCTTCTAAGGCT # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2670-2996 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTT010000033.1 Megasphaera sp. D52t1_170925_H4 NODE_33_length_15732_cov_72.0479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2670 36 100.0 38 .................................... AAACTCACCGTGCTTTTGAAAAGATTCCATTCTTTCTC 2744 36 100.0 37 .................................... TTGATACCTGTAATTGTCGACGGATTTTCGAAGCAGT 2817 36 100.0 35 .................................... CTGCGAACCAATGTTGCATCATGATCCGTAAGATT 2888 36 97.2 37 ......T............................. TATGTTGCTTCAAGTTCAAGCGGAGACCCTCCGGATT 2961 36 94.4 0 ......T..........................G.. | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 98.3 37 GTCGCAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : ATGCCATGCTGAACTTTGCCGTCAGCTGCAAACAGTACGTGAAAAACGTCGTCCTCACCGTCGTCGATAAAGTCGAAGACAGTGAAGAAATCAAGAAGTGCCGGGCCATCTGTGACGACTTGGGCTTGACCTTGCGGGTCCGGGTCTACGAAGATAAATAGAGAATCAGGCTATCATAAGATTATCTGAAAGAGCTGTCTCACGACGAGGCAGCTTTTTTGACGACGGGGAAGCCTCGATGAGAACGTTGACAATAAAAGGTGAAAACCGTATACTTGAGATAAATCAAAGACTGCGGCGGCTGAGGAAAACCTATTTTTGGCTCAAAAACCCCGGAGGTTTGAAAATTTCAAAAAGCGCTGCAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCAAATTTTATTTTTCACCCGGGTCCCCGAAAAGAGCGAAAAAAGCCTTAGGTTTGAAAAAATCGCCGGAGAGCCCAGACAGGGAGCGGGTACTGAGGGACAGA # Right flank : CTTCAGGACTACTTGCTAATGATGTACAGCAATGTGTCGCATTCCTATTTTCTTAGCCCTGATGTGACTCCTTTTTATAAAAGGGGGATATAGGGGAGCAACATTGAATCTGCTATGAGAAAAGCCGATACCGTCATCTATTTGAGATGTCTGGTATCGGCTTTTGTTATGGGTATCGAATTGGAGAAATACCTAGAAAAGATCAAAGCCCGTTCTCGTGATGAGAGCGGGCTTTGTCGTAGGACGATGATTTTTTACGATAAATAATGACGCACCTGACAGGCCGTGTGGGCTAGGACCCACGATGCGGAACACAGGGCAAGGGGAGCAGCGGCGATGACGACGGCCAGGTTTCTGGTTTCTGTCGTCATCGTGCTGTGCGTCAGCCATATAAGGGCTTTGAGGACGGTTTCGACAGTGACGCAGGCCGTAAACATGGCGATGATAAAGACGGCGACGGCCAAGGGCAGCATGATGAGATACGAGAAGAGATAGGTTGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2223-2726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTT010000032.1 Megasphaera sp. D52t1_170925_H4 NODE_32_length_17822_cov_65.268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================================================= ================== 2223 23 87.0 89 ........A...A.....A.... AAGCTAACTTGTGATTCCGAACAACCAATTATTTTGTTAAGAACGACTGAACATACTCCTTTCCTGATAAGAAAGGAGGCTATGCAGAG 2335 23 95.7 51 ........A.............. CGCATTTTCATATACTTCATTTGACCTATATTTCTTGCTGTTAAGAACCTT 2409 23 95.7 53 ........A.............. CCCCTGATTCTCGGGATTGTTCCCAGCCGCCAATCATGTTTGTTAAGAACCTT 2485 23 100.0 49 ....................... ACCTCTGACTCATAAGTCGTATATGAAATCATATCTTGTTAAGAACCTG 2557 23 100.0 47 ....................... GACTGGACTTTGTCCGGGTCCTAGGTTTGCGACTCGTTAAGAAACTT 2627 23 100.0 54 ....................... CTTGCATCTTGCGTATGCCATTGCAATTTCTCGCTTTCTGCCGTTAAGAACCTC 2704 23 87.0 0 ........A............CG | ========== ====== ====== ====== ======================= ========================================================================================= ================== 7 23 95.1 57 AATCCCCGCAAGGGGACGGAAAC # Left flank : CAGTCTCCGTGGGCTGCTGCGCATAAAAATGGCGATAAGCACGCTACCATATCAAAAGAATCGATTAAAGCCTTCTTTGAAAGTAAGCCGCCCATCCCTGAATTCACTATTCCCTACCAAGAAAACCACTTTGCAGGATATAGAGATAAGGACGGATATTTAGTACTTCCCAAGGAATGGGATGATGAAGCGTAGTTGGGAAGTATGGTGGGGCGCCTCGCAAACTGTAAAATTGATGGCGTAGTTAAGCCAGTTGTAAGGGGGCTGTTAAGAACCTTAATCCCCGTAAGGGGACGGAAACGCGTTAAGCTTGCAGTCGATCCAGTTTCTAGCCTTGATGTTAAGAAACTCAATCCCCAAAAGGGGACGGAAACTTGGTATACTTACCAATGTAGCTATCTTCAGCTGTTTTCTGTTAAGAACCACAATCCCCGCAAGGGGACGGAAACTTGTTAAATAACATACACATGTTTCAATCCGCGCCGCCCGTTAAGAACCTT # Right flank : GTTGTAAGATGTAAATTTGAAGACGGTATGAAAAAAGCCGGTACCAGGCATCTGTTGTGATGTCTGGTACCGGCTTTTTGTGTCGGGCTATTCTGTTGAATTGTACTGTTTTACGTGAAAAGGAGCAGTTATACCTTTATCGGTATGAAATGGGTTGGGGCAGCGTTAGGGGGAGCTTGTTCCGGATCTTATGGCCGGCATACTTTGCAGGGAACGTAGCCATAGGAGACGGCTTGGTCCCGGCTGTCGAAATAGGCGCGATTGGATTCGTTCATTTTTTGTTCCCAGCGGCAGCCTTGGTTGTGGAATTTCATGCTGGTCATGTTTCCCACATAGGTGGCTGAGGCGATGGCGGCCGTAGCTGTCCATAGGATTGTCGTTAAGGCAATGGCTATTTTCTTTTTCATGGCGAGGCTCTCCTTTTTTGTAATCTTTATTATCATTATAGCGAATATAATTAATTATGGAAAGTAAATTCATGGTATTCATTAAAATCTGCG # Questionable array : NO Score: 4.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-1.12, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 61630-61867 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTT010000013.1 Megasphaera sp. D52t1_170925_H4 NODE_13_length_71686_cov_65.9398, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 61630 23 100.0 54 ....................... AATTAATACTTGTTCAACCATGTCAAACCGAACTTCGTTGCTGTTTAGAACCTT 61707 23 100.0 47 ....................... AGGGTAGTCTTTCCCTCGATAGCAAAAAGTTCCGAGTTTAGAACCTT 61777 23 100.0 45 ....................... TTAATGTCGCTAAAATTGGGCTCTTCGGCCTGAGTTTAGAACCTA 61845 23 87.0 0 ........C..........G..G | ========== ====== ====== ====== ======================= ====================================================== ================== 4 23 96.8 49 AATCCCCGTAAGGGGACGGAAAC # Left flank : TAACAGCGTAAGCCCGATGGGGCAGATCTAAAAATAGAGTAGTAGCTTATAAAAGTTACTACTCTATTTTTTATCGAAAGCGGTAAGGCGGGTTCCGATTTAACGGTAGAGAATCGTTTGAAGGTTGACGGTCTGGGGAGAACCTGTCTTGGTAAGGGATTGGAGAGGGGATATTTTGGGATTTCCAGATCTCAAGCAATCGAAGCTCATGTCCATAAACCCCCCTTTTGGAGAGCGCTTAAAAAAGGTATTTCATAGCGGCGTTGTCGGAAAGTACTATGATATCCGCCAAAGAATTTCAAACATATGGTATAATATAAATAGATTTACGGATTTTATACCATTCTGCCCCCGATGGGATGAAACTGCGGCTGATGGGGATTTTTGAAAGAAACTTTCAGCGAAAAAGCAGAAAACAGCCGAAACATAAAATCCGCCCCGCAAATGTCCTTTTCAATGGCGTAACGAAGCCATTTGTAAGGGGTGCTGTTTAGAACCTT # Right flank : GCTTTCTGCTTTGAAGCGTAAATCTGAAGTTGGAATGAGAAAAGCCGCTGCGGGCATCTGTTTGTGATGTCTTGCGGCGGCTTTTTGCCATGTAGGAGTACTTGGTTGGGTGAAGGGGTACGAAATGATCGTATTGTAGCTTTTACGTAGAGGGACGATGGAGTTCGGAGTATGATGCAGGATGTCCTTTTTAGAGCGACGTTATCATTAGATCCATGCTATAATAGAACTAAAAAAGTGCGGAAAAAGGCATTCTTCAAAGCACGAGATAGGCGGTATAAGAATATGTCTCACGAAGAAAAACGGGTATGGGGGATTCATACCACAGATGATAATTTATTTTTGCAGCAGGCTGTCATCGCCATTGGTTGGAAGGCTATGGGCGATTTGAGCCGGATCGAAGCCAATCGGGAGGCTTTCAAGGAAAAGTACGCTGCCGTTTATCCTGATGCCAAGAAGGGCCGTGTTTCCAATCATGTTGGCATGCTTTATCGCTTTGT # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.29, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 39963-40206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTT010000014.1 Megasphaera sp. D52t1_170925_H4 NODE_14_length_64020_cov_58.33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 39963 23 100.0 53 ....................... GTAACTACATAATGGCAATGGCCGTTAATCGGTTTATGGCAGTTAAGAACCTC 40039 23 91.3 48 .......TC.............. GGTAGAATGACAGGCTATCCATGGCCTTATTGGTAAGTTAAGAACCTC 40110 23 100.0 51 ....................... TTCTTGCATTTTTTTCGTTCTGCTTAATCTGTTTTAGGCGTTAGAAACCAT 40184 23 73.9 0 ...............G.T.TTTT | ========== ====== ====== ====== ======================= ===================================================== ================== 4 23 91.3 51 AATCCCCGTAAGGGGACGGAAAC # Left flank : GGCCTGGATCCTACTGACCTATCAAAATGGCCAGTATACCACCGTCAACGACGGCATCATCCTGCCCTTTGTAACGAAATAATGAGATAAGAAACTCGGTGGAAATTCTCTGATATCAGACACATTTTTCCATGCTAATCAGGGATTCCAGAATACTTTTGGCAGATAATGAGGATAATTTAAGTGCTTTCCATATTAAACAGGGATGATTGAATAAATCATCCCTGTTTATTTTATGCAGTAAAAAGTAAGTATGACTTGAAATGCTGTATAAGTATATAGTGTATAAAAATATAAACAGTGGTATAATAAATATAGTTGATTGAAGACGGCATTAAAGCATATTCCACCCCGCAATAGCAATGATGCCGATTTTCATAGTTTATAGTATCAATTATCAATATAAAACGCTGAAAAACGGCAAAAATAAAATCCGCCCCGCAAACGCCATTTTTGATGGCTTAGTTATGCCATCTGTAAGGGGTGCCGTTAAGAACCTC # Right flank : TTGGACGAAAAAAGCTATGGATTTATGTTTGTATACATGGGTCCATAGCTTTTATGTTCTATGGATGGTATTGAATCTTTAGAAACATGGTGTGGGGTAATTTTTGATTACGGTGGCTCATTTACTTTCATTAGAGATTTCGCTAATTGGCTGTGATATGATAGAATGAAGGTATAATCATGGATGGCGGGGTGAGGGTATGGCCTATAACGTACCGGATGTGGTTTTGCAGGATATTTCTCGATTTGCGGAGAAACATGGGATTCGTCGGGTCCTTTTATTCGGTTCCCGAGCCAGAGGGACGCAGACGGAACGCAGCGATATTGATCTGGCTGTCTGCGGCGGGGATTTTGACGGCTTTTACTGGGATATCAAGGAACATGCGCACTCTTTGTTGATGATCGATGTTGTTAATTTAGATGCTGGTGTTTCTGACAATCTGCAACGGGAATTGGAAAGGGATGGGGTCACGCTGTATGAAAAAGTTGGATAATTTTTCA # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.40, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 49450-49050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTT010000005.1 Megasphaera sp. D52t1_170925_H4 NODE_5_length_100905_cov_59.7606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 49449 36 100.0 37 .................................... ACCGGATGTTTTCGTCCCAGAAATCCCATGCCCACGA 49376 36 100.0 34 .................................... AGCATATATCTTCTTTTCTGTCTTTCTAAGCCAA 49306 36 100.0 40 .................................... TTCTTCCGGGACTACGATATCCCAGTAGCGCTGACTCCGG 49230 36 100.0 37 .................................... AAGAAAAAATATGATTAGGTGGTTATGGCGCGAACAC 49157 36 100.0 36 .................................... GCCGGATTACCATCTTCGACGGATCGAAGCTGGTTT 49085 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 100.0 37 GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Left flank : ATCGTCAAGTCTATTACTTACGCATGATGAGCTATGATTACGTCGGTTATAAGCGCCCAGCCAAAGCCGTCTTAGAGATTCTTTACGATTACTTCCAAATCCGTACCGAGCGAAATCACATCAACCACGCCTACGAGGAAGACTCGCTGTCGACGCAAGCTATAAAAGACCTGGTCTTAGATTTGCTGCGGCGAATGGAAGACATCGATAAGCTCAAATCGTGAAAATATCGAGAGCTTGAACCTTTGACAAGATAAGTCAAAAAAAGTATACTAAATATAAATAAGGGTAATACCTTAGCCTGTAGAAAACCTATTTTGGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGCTTTTGAACCCGGGTCCCCGAAAAAGGGGAAAAATGCCCGAGGTTTGAAAAAATCGCCTGTGAGCCCGCTCCTAGAGCGGGTACTGAGGGACAGA # Right flank : CCGACTTCGTAAAGATCCTGCATGCATTTTGGATCCTCGTCGTATTACCCGATTTCGTCATTTCTTGACTTTTCATCGCAAACAAGATATACTTATCCGTAGCCGAATGATTGACTGTTTAGGCGCATGATTTAGAACTATTACAAAGAATGGTTCTATTCGTGCGCCTTTTTTGCGTACTTTTTGCCATTCAGTTTCTTTCCGACAGGAGGTATGCCTATGTTTACCCTTTATTATTTCGAAGGTCCCGGGTATGAAATTTTCCCCTTGCGGACCCGACTCAACGACATTTTCACATATCAGGCTCAGCACGCCGTCAATAAGTATCCTGACCTCGCTGACCTTGGCATTGAGCTCGACGATCTTAGCTTTGAGTTCGATGACGGCAGCCATGACCTGGTCCACATCCTCGACGCCTTGGAGGGGCCGAAGGACATTTGGCACGGCGGTGCTGTCTGTGAAGACATCAGCCCCGACGCCTGCCGGCAGCTGCGGAACGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 2 52399-51701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTT010000005.1 Megasphaera sp. D52t1_170925_H4 NODE_5_length_100905_cov_59.7606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 52398 36 100.0 35 .................................... ATTCCTCCAATCAGTCAATCTAAAATATAAAAAAA 52327 36 100.0 38 .................................... GTAGCCTCTACAGCCTTAAACTTAAACGCGTCGGATAA 52253 36 100.0 41 .................................... TTGCAGCGCGTCAAGTAGCGCGCAGAGAAGCGTTACTGAAC 52176 36 100.0 36 .................................... CCGGGAAGACCAAGTCGCGGCGTTCCGGTAATGCGG 52104 36 100.0 38 .................................... ATCCTGCGCAAGATGCTGGCTGGCTTCGATTTCGATAC 52030 36 100.0 37 .................................... TCCTTCGAAGCGGACTTCATATACAGTTCTTTTTTTC 51957 36 97.2 37 ............A....................... AAACAAAATGCAATAATCATGGAAATAGAGATGTTAG 51884 36 97.2 37 ............A....................... AAACAAAATGCAATAATCATGGAAATAGAGATGTTAG 51811 36 97.2 39 ............A....................... CTGCTTTTTTAATGCTATTAATCGTTTTCATAGTGATCC 51736 36 97.2 0 ............A....................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 98.9 38 GTCGTATTACCCGATTCCCCGTAAGGGGACTGAAAC # Left flank : TCCGAAAAGCCAATTACTTGCAAATGATGAGCAACGATGACGTCGCTTATAAACGCCCGGCCGAGGCTACCATGGAGATTCTCTATAACTACTTCCAAATCCGTAATGAACGGAATAACATCAACCACGCCAATGACGAAGACTCTTTGTCGACGGAGGCGATAAAAGACCTGGTCCTCGACTTACTGCGGCGAATGGAAGACATCGATGGGCTCAAATCGTGAAAATATCGAGAGCTTGAACCTTTGACAAGATAAGTCAAAAAAAGTATACTAAATATAAATAAGGGTAATACGTTAGCCTGTGGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGGTTTTGAACCCGGGTCCCCGAAAAAAGTGAAAAATGCCCGAGGTTTGAAAAAATCGCCTGTGAGACCAGTCAGGGAGCGGGTACTGGGAGACAGA # Right flank : AATGATGTACAGCAACGTGACCAGCATTGTAAGTACGTCGTATTACCCGATTCCCCATCTTTAATGTGACTCCTTTTAGAAAAAGGAGGGAATGCCATAGGGGACGGAACAACCTCCGGATGTAGGAGTTGGTTCCTATATTCGGAGGTTGTTGTAGTTTTATTTAGTCTAAGAAGGGTACGGAGCCTGCGCCATAAAAAGAGGTGAACCGATGAAACATATCCTGCTGATGTTTTTTAGTGAAGCACGTCTCCATCACGACGGCATGATGATGGACGGTGTCCGGGACAAGGAATCCGTCGTTCAAAGTATTGCTGATTCATTAAAAGTGCAGGGAGAACAATTAGACTGTCTGTGCTGCTTTTCAACGAAAAAGCTGCCGGAAGAGATTGGCTATGGCGATGAAGTCAGTTGTGCGTATATCCTGAATCATGAGGCCTTAATCCCAGCGCGGATGCAGTCTCTTGCCGGACACTTCATCGGCATCGATTATGATGAAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCGATTCCCCGTAAGGGGACTGAAAC # Alternate repeat : GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 3 60104-59467 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTT010000005.1 Megasphaera sp. D52t1_170925_H4 NODE_5_length_100905_cov_59.7606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 60103 36 100.0 43 .................................... TCGCCACGCACGCGAAGAACAAAAAGGAGGCCAAAAAATAGGG 60024 36 100.0 39 .................................... TGACGTTAGCACGATAACCATAAAACGGATTGTTTTTCT 59949 36 100.0 39 .................................... CACATGGATAATTTGGATTATGGTAGTTTGGCTGCTCAT 59874 36 100.0 40 .................................... CCGGCGGTAATGCCGTTGCGGCCATCACAAAGCAGCGCAT 59798 36 100.0 37 .................................... CGCTTAAAGAGCCATCCGTATTTCTCGATGGCTTTCG 59725 36 100.0 38 .................................... GAGTCAGGGCGACTCATCGCTGCTATTGTTTTGCATGT 59651 36 100.0 40 .................................... TCTTGGAATAAAGCCATCATTTTATTGAATGGACGTTCTC 59575 36 100.0 36 .................................... ATCGCCAGTAAGACCATGAACGAGAGAAAGTCATAC 59503 36 77.8 0 T.G.AGC.....................T....C.G | T [59486] ========== ====== ====== ====== ==================================== =========================================== ================== 9 36 97.5 39 GTCGTATTACCCATTTCCCCGTAAGGGGACTGAAAC # Left flank : ATATTTACGAATGATTGCTTATGGCATCGTTCAATATCGGTCGCCGGCAAAAGGGGCCTTAGAGATTTTGTACGACTACTTTAAAATCCGGGCAGAACGCAATAATATCAACCATGCCAACGCCGAAGACACGATGTCGACGCGGGAAGTCAAAAACTTGGTATTAGACCTGCTGCAGAGAATAGAGAGTCAACAGTAACCTACTATAAAGCGAGAATCTATCCGCTTCAAGAGAGTTTGACCAATTGACAAGATAAGTCAAAAAAGATATACTAAATATAAATAAGGGTAATACGTTAGCCCAAAGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGGTTTTGAACCCGGGTCCCCGAAAAAGGCAAAAAAAGCCCGAGGTTTGAAAAAATCGCCTGTGGGCCCGCTCCCAGAGCGGGTACTGAGGGACAGA # Right flank : GATAAGTGAAAACTTGTCCTGATTTTTTTATATTTTTTTTGCCTGATGGAGGTGGTGCTGTCCATGCGGTATCTTATTTGCTATGATATTGCGGATACGAAACTTCGTACCAAGGTCGCTAAGTATTTAGAAGGCTTTGCTTTTCGTATCCAGTACAGTGTCTTTATGTGTGAAAACACGGAAAAGGGCATGGCGGAAGTCTATAAGCGCCTCATTGTTTTGACGCACGATGCTTCAAAGAAAGCGATTCTTATCGTTCCCCTGTGTCGGAGCTGCGAAAGCAAGATGAAGACCCTTGGCACGGCCATTGAAAGTGAAACGTATTGTATCATTGCCTGAAAGAAGGGATGTCATGAGTGTTCTCTACTTGCTCTCGACCGGCAGTTACTTGCGGAAAATCAAAGACCGCCTACTCATCGGCAGGGCTGATGGAAGTCATAAGAGTCTACCTATTCAAAACGTCGAGCAAATCGTCCTCAATAAGGGCGGCAAGATTACAC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCATTTCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 77434-76951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTT010000005.1 Megasphaera sp. D52t1_170925_H4 NODE_5_length_100905_cov_59.7606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 77433 36 100.0 38 .................................... GACGGCAAATAAAACTGCTAAAACCAAAACAAAAATAA 77359 36 100.0 39 .................................... TCGCCGAACTTCACGACGATACATAATTCCGGATACGAT 77284 36 100.0 37 .................................... ACTCCTCCAATCAGTCAGTCGAGATATAAAAAGACAA 77211 36 100.0 40 .................................... TCCATGTGAGAATGAATTTTCTGGATATTGTTATTGTTGA 77135 36 100.0 40 .................................... GCGCCGTAGCCGGCTTCGTTGTTAAGCAGGATCGTAGATC 77059 36 100.0 37 .................................... GAGTCTCCATGAAAATGGACACAGCCTCGTTCGTTGA 76986 36 91.7 0 ..............A.............G.....C. | ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 98.8 39 GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Left flank : ACCTGGTGGAACGCTTGCAATTATTTTTAAAAGAGGCCAATGAGGAAACGGTGGCTCAACTCCCACCCCATAGAACATAAAAACGATGAGTATCTTTTTTTGCCGCCGTGAGATCCTCGCGATCCATATCTCACCGTAGAATGGAAAACATAAAATCCCTGAGAAAGGCGATGATAAGCAAATCTCAGGGATTTCTTTATGTCGTTGCGGAAGGCCATCATGCATCGACGTCAGAGTTTGACCAATTGACAAGATAAGTCAAAAAAAGTATACTGATTATAAATAAGGGTAATACGTTAGCCTGTGGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGGTTTTGAACCCGGGTCCCCGAAAAAGGCGAAAAAAGCCCGAGGTTTGAAAAAATCGTCTGTGGGCCCGCTCCCAGAGCGGGTACTGGAAGACAGA # Right flank : GGGAAGAATCTGAACCGGTCTCACTCGGACATTTCAATCAGAGACACGCAAAAGCACCGCCGCAGTCGAAACTGCGACGGTGTTTTTTATACCCTAATATAAAGAGCAACGCCCTTGAATCGGAATACCGGGTCAAGGGCGTTGTTGTAACAGTGAGAAATCCTATACATTTATGCAGACGACAGAAAGGATTTGAAATTCTTGAAAGAGTTGCCGATGAAAATACATTATTTGGCAGGATTCTGTGACAATCGTGTAGAAAATATAACGTATAGAAGTATTTGTTCCGTAAAAAACAACATAGATATTGAAAGGAGATTGAATATGTCGGAATTGTCAACCTTATTAGCGAATCAGCAAGGCCTGCTGGAGAGGTTGAAGGTTTTGGATGGTGTCGGAGCAGGACGGAAAAAAGATGAAATTGCAGCTGTGAAGAATGAACTTCAGGCCATGACCGCTGAAGCGGATCGGTTATATAGTGACAGCCGTGACAGACTTTT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //