Array 1 896-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDAV01000003.1 Listeria monocytogenes strain ICDC_LM1551 LM1551Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 895 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 829 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 763 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 697 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 631 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 565 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 499 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 433 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 366 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 300 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 234 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 168 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 102 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 11944-10387 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDAV01000009.1 Listeria monocytogenes strain ICDC_LM1551 LM1551Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11943 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 11877 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 11811 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 11745 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 11679 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 11613 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 11547 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 11481 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 11415 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 11349 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 11283 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 11217 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 11151 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 11085 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 11019 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 10953 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 10887 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 10821 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 10755 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 10689 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 10623 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 10557 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 10491 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 10425 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [10390,10393,10398] ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : | # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //