Array 1 23485-23933 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIET01000015.1 Pseudoalteromonas sp. MSK9-3 scaffold23_cov1016_read255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23485 28 100.0 32 ............................ TTCAACCGCGTCCTTTATCTTTTGTAGCTCCC 23545 28 100.0 32 ............................ GCTTATAGAGAGAAAGGATGAGATCGTTGCCT 23605 28 100.0 32 ............................ GTTTTGACTGTGCAGTAACCACCAATAACATT 23665 28 100.0 32 ............................ TTTATCTTTTGTAGCTCCTGCCTCATCATCTC 23725 28 100.0 32 ............................ GTCAACAGTTGCAGAAGAAAAGCCCCTCAAAA 23785 28 100.0 32 ............................ AAGCACGGCACCCACCGCCGCACCAATTGGTC 23845 28 100.0 32 ............................ TTATTAATGAAGGTGTCTTGCTGTTTTTGGTA 23905 28 96.4 0 .........................T.. | G [23929] ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGTTAAGTCGGACTCAGGTGGACGTTAGAGCTTATTAGATTGAAGTAATCTGATGTTGGATATATCAACAGAGTTTTTGTATCCAACTTTGTTCAACATATATATCTTTTTTGTGGGTGAACAATAAAGATATATATATTGGACCATAAAGGCACGCACGGGGCGTTCTGTAGGCGAAGGTTTAGCCTTCACATTTTCTCGCACAGATAGGAAAACGAGCGATTGACACGCACTGTGTCAAATACCCTCTCACACCGATCAAAGCCTTATGCCTTTAGCACTGCAATGAATATTCAATGTAGTTTTAAAATCATCCGTGGTGATCTTGAATGTTTCGTGTCATTATTTGTTCGAATAGGTGAAAAAACACCCTTTAATTTCTAGCTCTTTAAAAAATCCATATAAAACAATCACCTAAATTTAATTGGTTTTAAAAGGGTAAAATGTAAGTTTTATTAGTAACATTATGATTTAATTTAACTTTACCAAAATAGTTCATT # Right flank : ATGAGTGACTGAAACGCTTTCGTTTTATAAAAGCGCAGCACGAAGAAGTGAGGTCATGGATGACCGATGTAACCCAGCCCCAAGGATTGATTGTTCACGCTGTGGTGGTGTTTTGTGGACCCTGAATCAAGTTCAGGGAGACGAAGGTGTAAAATTTGCTATATTCGCGGCATTAAGCCCCGCCAACAGCTAAGATGAAACGGAATACTGGCTCAATACACTGTCTTTCTGACGAAGGTCAGAATCCAGTGTTTTAAAGTGTTGGCCTACACTGTTGAGCTTAATCTGTGCAGGTGTTTTAAAGTGTTGGCCTACACTGTTGAACCTAATTCATGGTGGAAACATTTGATGTAACCCAGCTCCTAGGATAGATTGTTCACGCAGTCGTGATTGTTTTGTGGACCCTGAATCAAGTTCAGGGAGACGAAGGTGTAAAATTTGCTATATTCGCGGCATTAAGCCTCGCCAACGCGTGAAGTTCCGCATAATTCGTCTTTCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 66304-67172 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIET01000042.1 Pseudoalteromonas sp. MSK9-3 scaffold4_cov849_read255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66304 28 100.0 32 ............................ TGCTTGAGGGATAGCTCCTGCTTGAGGGATAG 66364 28 100.0 32 ............................ TGCAAGACCCGCCATACCGTCCAGTGCATCGC 66424 28 100.0 32 ............................ ACAAAAAAGAAATGCTAAAAAGGGTTACGTTT 66484 28 100.0 32 ............................ ACTTAGATGACCCGCTAAGACTTCCAAAAAGG 66544 28 100.0 32 ............................ TTCAACTTGTACCATTTTTGGACCTGACACCA 66604 28 100.0 32 ............................ TTCATTAGATAACCCCTTTTGCGACGAGCGTT 66664 28 100.0 32 ............................ TGCTTAGAGACGGCCCAACTGAATTTAATTGT 66724 28 100.0 32 ............................ GTTCGATAAAATCATTATCACGTCTGAAGTAC 66784 28 100.0 32 ............................ CTTGCAGACTCTAGTTCAACAACACGCTTTTT 66844 28 100.0 32 ............................ TTCTGGCTATGCGTAAATCATCTCCTTTCAGT 66904 28 100.0 33 ............................ AACGTATCGACGAACAGCGGTTTGCTTTTGCAT 66965 28 100.0 32 ............................ AATGGCATTCAGCGAGTGTCATTTACAAAAGC 67025 28 96.4 32 .C.......................... AACCCGCACATATGCCCATTCATTACTTACCA 67085 28 100.0 32 ............................ TTCATGTTGTATAATTTTTTGCATCTAATTTT 67145 28 75.0 0 ..................T.TAGT.G.T | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAAAATATATAACCCGTGTACGGCGTTAATTAAAGTATAATTTCATAAAGCAAAACCCTTATTAGGATTGACTAATAGGGGTTTTTTTATGTTTAGAGCTGGGCTTTTTCAATCTACATATTGACCCTGAAACAAGTTCAGGGAGACACAGTTGATTGAATTTTCTTAGTAACTATTAGCTTTTATATGCGCGGCGTAAAGCCCCGCCAACGGCTAAGATGAAACGCAATACTGGCCCCATACTCCGTCTTTCTGACGAAGGTCAGAATCCATTTTAGTATTGAGTGTGTCGTTAAATGTGCAATGAAATCATTGATGGTGCAGTTTCAGTTTTCATGTCATTATTTGTACGGACAGATGTAAAAATACCCTTTGATTTTTCGCTCTTTAAAAAAGCATTTAAAAACAATAACCTATATTTCCTTGGTTTTCACAAGGTAAAAATAGGTATATTGGGGTTAAGCTTCTGATTTTAATGGACTTAAGATAAGTTAGTCATT # Right flank : TGCTTTGTGGACCCTGAATCAAGTTCAGGGAGACAAAAGTTGAGTATATTTGTTTTTAAATGAACTCTGAATTTGGGGATTACACGCAATACTCGCCTTATACTCCGTCTTTCTGACGCAGGTCAGAATCCATTATTTTTTAGAAAGCAGATGGGTTAAATGACACGTATTTGAATTGTTATGTGGACCATGAATCAAGTTCAGGGAGACGAAGTGTGAAACTTGCCATGTACGCGGCGTAAAGCCCCGCTAGTAGCTAAGATGAAACACCATACTCGCCTTATACACTGTCTTTCTGACGCAGGTCAGAATCCATTATTTTTTAGAAAGCAGATGGGTTAAATGACACGTATTTGAATTGTTATGCGGACCCTGAATCAAGTTCAGGGAGACGAAATGGGTTTAACAACGTCTAGCCTTTATATGCACGGCATAAAGCTCCGCCAACGGGAAAGATGAAACGCAATACTCACCTTATACTCCGTCTTTCTGGCGGAGGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 75013-74023 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIET01000022.1 Pseudoalteromonas sp. MSK9-3 scaffold2_cov816_read255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 75012 28 100.0 32 ............................ CGACAGAGCTATCAGGCAATAAATTCGGTGGT 74952 28 100.0 32 ............................ TCGGCTTCGAGCTTCAATTAAAAGTGATATCG 74892 28 100.0 32 ............................ GCTAGGCATAGGTTTAGATGGGAGTTATACCC 74832 28 100.0 32 ............................ AGTGATGCGCTGGATCGATTTTCCCCAATAGC 74772 28 100.0 32 ............................ TAGTGCTGGTTTATCGCCGTAACCCGTAACTA 74712 28 100.0 33 ............................ ACATCAAAAGACTGTCTGAATAGTGCATCTCAA 74651 28 100.0 32 ............................ AATCGAGCGCCGATACTTTTTCAGCAATCAAA 74591 28 100.0 32 ............................ AACAAGTTAGTCAATGGGGCGGAGGCGGTGCC 74531 28 100.0 32 ............................ ATCACGACACACTTTAAATTCATGCCAATCTG 74471 28 100.0 32 ............................ CAAAGTTAAGGGCGCTGTTCACTGTGTCCCCG 74411 28 100.0 32 ............................ ACAGACACGAATGGTAAAAAGAATACTAAAGC 74351 28 100.0 32 ............................ ACCTAATGAAATAAGCGCCGCTTTTTGCTCGT 74291 28 100.0 32 ............................ TTGATTTAACTAAAGGACCAACCGCGATGAAT 74231 28 100.0 32 ............................ TGTTTCATAGTCGATTTCATGTTCTATGTGAC 74171 28 100.0 32 ............................ TGTTCCTGATATTTACGAAACGGACGATGATT 74111 28 96.4 33 ..T......................... CATTTAGACGGCTTTTGCTTTTCACCACAGCAA 74050 28 85.7 0 C.T.......A.G............... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTCCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTCTTTTGCTTTTTCTATCAGCTTGTTCACTGCCACACAGGCAGCTTAGAAAACTGCCATTTGTCACATAACCGTTGTTATCGCGTTCACTGCCGCATAGGCAGCTTAGGTGATGAGTGACCGAAACGTAGTTTCGCAGCACGAAGAAGTGAGGTCATAGATGACCGATGTAACCCAGCTCCAAGGATGGATTTAAAACGCTGAGGTTAGTTTTATTTATTCACTGCCGCATAGGCTTTGGTAGTTGTTTTATGGACCCTGAAACAAGTTCAGGGAGACAAAAGGTGGTTATGTTAAGCACTGTCGTAAAGGTAGTTTGATGTGTTTGGGTAAGGTGCAATGAGTTAAAGGGGTAAATACCCTATAAAAACCTTTTATTTTTCGCTCTTTAAAAAGTAACTATAAAACAGTAAGTTACAATTGGTCGTTTTTTATATGGTTAAAATGGTATTTTAGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATT # Right flank : AATTCCAAATTGCACAGCGCGAAGAAGTGAGGTCATGGATGACCGATGAAACCCAGCTCCAAGGATGGATTATTTACACTTTAGAGGCTTTTTTTTGGACCCTGAAACAAGTTCAGGGAGACGAAGGGGGGTTGCGTTGTATATGTGCGCGGCATGAAGCTTTTCCAACGAGTGAGGTCCTACACAGTTCGTCTTTCTGACGCAGGTCAGAATCCATGGTTTTAAGGTGCTTGCCTACATCGTATAGTTTAATTCATGCAGTGACCGATGTAACCCAGCTTCATGGACGGATTATTTACGCTGTAGTTGATGTTTTGTGGACCCTGAATCAAGTTTAGGGAGACGAGAGTGTGGCGTATTTTTATGGACCCTGAAACCAGTTCAGGGAGGCGAAGGGTGTGGCGTATTTTTATGGACCCTGAAACGAGTTCAGGGAGACAAAGGGGGGTTGCGTTGTGGCGCGCGGCATAGAGCCCCGCCAACGGGCTAAGTACCTGCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 76569-75401 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIET01000022.1 Pseudoalteromonas sp. MSK9-3 scaffold2_cov816_read255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76568 28 100.0 32 ............................ AGCTTGAAAAAGACATATACAGTGTATTGTAT 76508 28 100.0 32 ............................ GCACCAGGCATTGAAAGCAACCAATCATGGGC 76448 28 100.0 32 ............................ ATTAAATGGGTGACTGAAAACTTAACAAAGAA 76388 28 100.0 32 ............................ CTGACCAACTAAACCACCCAGATACGCATCCT 76328 28 100.0 32 ............................ ACCAGTTTGACCACCCAAGACGCCAGCGCCTT 76268 28 100.0 32 ............................ TGCAATTTTTGCTTAGCCCATGCTTGTCCTGC 76208 28 100.0 32 ............................ ACTAGCGCACGCATGATGTCAGCGAGTACACC 76148 28 100.0 32 ............................ CAGCGCTGGGCGATAGTGTTTACGAGTACAAC 76088 28 100.0 32 ............................ CACAATCAGCCGGTGAGCTTGAAGCGTTACGA 76028 28 100.0 32 ............................ AATAGCGCTGCAGTGACTCGCTACACCAACGA 75968 28 100.0 32 ............................ TTGACTGATTGCGTTAGCGAGTTTTGTTTCAT 75908 28 100.0 32 ............................ AAGCTGTATATCATTGTTTGTATCGCCACCGA 75848 28 96.4 32 .....T...................... CAGTTGTTCATTTAAAACTCTGCTCGCTTGCT 75788 28 100.0 32 ............................ TCTCTGAATGTCTGCTCAACCGCGACATCATC 75728 28 100.0 32 ............................ ATACCCGACAGCACATTACCCAGCCCAACCAA 75668 28 100.0 32 ............................ GTATTGCGCTGCAAGTTCTGCGTTTAGCCCTG 75608 28 96.4 32 ..........A................. AAACCAGTACAACTCACGCTGCTTTGCTTTTT 75548 28 96.4 32 ..........A................. GGCGCAAGCTCTTTTGCTTTTTCTATCAGCTT 75488 28 96.4 32 ..........A................. ACTGCCATTTGTCACATAACCGTTGTTATCGC 75428 28 85.7 0 .............T...........GTG | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGTATGCCTACTTTAAGCGTAAGAACTTTAAGTCACCGGCAAAATTAATAAAAGAAATAGATTCGCGAGCAGCAAAAATTGCCGCGAAGAATGGTTTTGATTTGGTAAAAGTTAAAGAGCGTTTAATGGAATCTATAACAAAGCTTGAAGAGCGTTCAACTTTACCTTATATCAACTTACGCAGTCTTTCATCTGATAAATTACTCAGTGCAGAAGATCGAAAAAAGTTTTTGTTGTTTATTGAATGCGAAATTGTCACACAACCACTTAATCAAATAGGCTTATTTACATGTCATGGCTTAAGCCGACGTTCTGAAGAGGATCAATCGGCAGTGCCTTGGTTTGAAGGGTAATAATATCCTTTAAAACCCCTTTATTTTTCGCTCTTTAAAAAGTAACTATAAAACAGTGAGTTACAATTAGTCGTTTTTTATATGGTTAAAAGGGCATTTTAGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATT # Right flank : ATGAGTGACCGAAACGTAGTTTCGCAGCACGAAGAAGTGAGGTCATAGATGACCGATGTAACCCAGCTCCAAGGATGGATTTAAAACGCTGAGGTTAGTTTTATTTATTCACTGCCGCATAGGCTTTGGTAGTTGTTTTATGGACCCTGAAACAAGTTCAGGGAGACAAAAGGTGGTTATGTTAAGCACTGTCGTAAAGGTAGTTTGATGTGTTTGGGTAAGGTGCAATGAGTTAAAGGGGTAAATACCCTATAAAAACCTTTTATTTTTCGCTCTTTAAAAAGTAACTATAAAACAGTAAGTTACAATTGGTCGTTTTTTATATGGTTAAAATGGTATTTTAGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATTGTCCACTGCCGCACAGGCAGCTTAGAAACGACAGAGCTATCAGGCAATAAATTCGGTGGTGTCCACTGCCGCACAGGCAGCTTAGAAATCGGCTTCGAGCTTCAATTAAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 87363-86800 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIET01000022.1 Pseudoalteromonas sp. MSK9-3 scaffold2_cov816_read255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================================================================== ================== 87362 28 100.0 32 ............................ ATTCTAACGGCCATGACAACCACGCAATAGCG 87302 28 100.0 32 ............................ GTAATTATTGCGGTACGTCATTAATGTTTTGT 87242 28 100.0 32 ............................ ACACAACGAACGCGCCGATAACAGCACCCGTG 87182 28 100.0 32 ............................ TTTAAATAGCAACGCCACCCTTTGCTCCCTTT 87122 28 92.9 11 ...........A..............C. GCTTGGCCGAA T,TT [87096,87098] Deletion [87084] 87080 28 100.0 32 ............................ ATTTAAGTTATCAAACATCTTAGCAGCAACTA 87020 28 71.4 165 ...........CCA.C.A.......GTG ATGAGTGACCGAAACGACGTGTTTTGCAGGGGGTGCAGCGCGAAGAAGTGAGGTTATGGCAGGTTTTTTGTTCCAGACAAACCTAAGTACCTGCATCCAAGCTGGCAACGACCGATTTACCCCAGCTCCAAGGACGGATTTAAAACGCTGAAGTTAGTTTTGTCT 86827 28 89.3 0 A..........C.C.............. | ========== ====== ====== ====== ============================ ===================================================================================================================================================================== ================== 8 28 94.2 48 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTCACTGCCGCACAGGCAGCTTAGAAATAGCGCAACGAGAAAACGAACAATTTCTTAGATGTTCACTGCCGCACAGGCAGCTTAGAAAAAACATTTGCTAGCTCTGAATTTGGAATTAATGTCCACTGCCGCACAGGCAGCTTAGGCGATGAGTGACCGAAACGCAGTTTCGCAGCGCGAAGAGGTGAGGTCATGGATGACCGATGTAACCCAGCTCCAAGGACGGATTGTTCACGCTTAAGTGTCAATATTATGGACCCTGAAGCAAGTTCAGGGAGACGAATGGTGGTTATGTTATGCACTGTCGCAAAGGTAGTTTTATGTGTTTGGGTAAGGTGCAATGAGTTAAAGGGGTAAATACCCTTTAAAAACCTTTTATTTTTCTTTCTATAAAAATGACTATAAAACAATAAGTTAAAGTTGAACGTTTTTTATATGGTTAGAATGATATTTTAGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATT # Right flank : CTTGATGCTTCCAGTTCACCAACGCGCTTTTTGTTAACTGCCGCACAGGCTTTGGTAGTTGTTTTATGGACCCTGAATCAAGTTCAGGGAGACGAAAGGTGGTTATGTTAGTGTACTGCCGTCAACGTTGGCTCTTATTATGCGCGGTATAAAGCCCTGCCAACGAACGAGACCCCACACAACTTGTCTTTCTGACGAAGGTCAGAATCCATGGTTTGGTCACGAAAATACGGTATTTTGTCGTGGATCAATGATCTTATGAATATATTTTGATACATTAAATTAACTTAAAATTCACTAAAAGTGATTTATGCAAGCTAAGGAAGAGCAGTATTTTAGGTATATTGAAGCCGTGTTGTTTTGGCAAGCAGAAATTCAAACTGGTGTATTTCAAGATAAATTTAAACTTTCAAGGCCCAGTGCTCGGCGGTATTTAACCGACTATATTGAACGACATGATATTGCCGCAAAGTATGATGAGTCAGAAAAAGCGTATGTAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 88419-87715 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIET01000022.1 Pseudoalteromonas sp. MSK9-3 scaffold2_cov816_read255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================== ================== 88418 28 100.0 32 ............................ TTTGCAATTAGATTTTTTAACGCTATCAGCTA 88358 28 100.0 32 ............................ GACTCTAGCGCAGATGGTTTTGCGGGGGCATA 88298 28 100.0 32 ............................ TGGCATGTTGGGTGATGTAATGAGCGTTGACT 88238 28 100.0 32 ............................ TGATAAAACAGAGAGAGACTACAAAGAGCTTG 88178 28 100.0 32 ............................ GTTTTACGCAAACGGATCCAAGGTGCGACTTT 88118 28 89.3 106 .........................GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCCAGCTCCAAGGACGGATTTAAAACGCTGAGGTTAGTTTTGTCT 87984 28 92.9 32 A.T......................... AAACATATCAAGCGCTGCGGGTGCATACTTTT 87924 28 96.4 33 ..T......................... TCGCTATCTTGTGGCGTGTGGTTGTTTCTGCTT 87863 28 96.4 33 ..T......................... TAGCGCAACGAGAAAACGAACAATTTCTTAGAT 87802 28 96.4 32 ..T......................... AAACATTTGCTAGCTCTGAATTTGGAATTAAT 87742 28 89.3 0 .........................GCG | ========== ====== ====== ====== ============================ ========================================================================================================== ================== 11 28 96.4 40 GTCCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAACATAACTATTTGAATCAGCATAAAGGCGCTGACGACACACAATTGTGCCCAATTGCCTTACTCATTTCAGATATTCGCCACCGAGATCCAGCCATTCGAGAAACGTATGAAAAAGTGTTTGCAGGGTTTGTAGAGTATATAAACAGCCATGTAAACGAGCGCAGCGCCGCATTAGCGCAAGCAGCCACCATGATAGGCGCAGTCGCACTGGCGCAAACCTTAACGGACGAAAGCTTAAAAGCGGAGTTACTCGCCGCATGTGAGGCTGCAACTCGGTGTGAACAAGATTGATATTATTGTACGTAAATTCCGATATAGCACTTCAGCGCACCTTATGTCATGATGGGTCTGGTTAGGCTAAAAAACACCCTTTAATTTTCGCTCTTTAAAAAATACTGCTAAATCAAAGTGTTAAATAATGGCGCATTTTATAAGGTAAAAACACCGATTTAAACGTAACACATTGATATACATTACCTTGGTGTAAAAATCGCATT # Right flank : ATGAGTGACCGAAACGCAGTTTCGCAGCGCGAAGAGGTGAGGTCATGGATGACCGATGTAACCCAGCTCCAAGGACGGATTGTTCACGCTTAAGTGTCAATATTATGGACCCTGAAGCAAGTTCAGGGAGACGAATGGTGGTTATGTTATGCACTGTCGCAAAGGTAGTTTTATGTGTTTGGGTAAGGTGCAATGAGTTAAAGGGGTAAATACCCTTTAAAAACCTTTTATTTTTCTTTCTATAAAAATGACTATAAAACAATAAGTTAAAGTTGAACGTTTTTTATATGGTTAGAATGATATTTTAGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATTGTTCACTGCCGTATAGGCAGCTTAGAAAATTCTAACGGCCATGACAACCACGCAATAGCGGTTCACTGCCGTATAGGCAGCTTAGAAAGTAATTATTGCGGTACGTCATTAATGTTTTGTGTTCACTGCCGTATAGGCAGCTTAGAAA # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.63, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //