Array 1 67060-71293 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUB010000008.1 Campylobacter concisus isolate 2009-118452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 67060 30 100.0 35 .............................. TCTTGTATGTTAGGGCTAATATGACAAAGATCATA 67125 30 100.0 37 .............................. GGCTCTTTAGAATCAGAAGTATTTACAGAAGTATTTA 67192 30 100.0 36 .............................. TACGATAACTTCACTAAATTTTTCATCTTTTGTTTC 67258 30 100.0 36 .............................. CACTTGCCTCAAAAGACGAGATCGCAGGGCGTATCG 67324 30 100.0 38 .............................. AGCCAAAAGGCAATGCTTGTGGTAATGCAATACCTAGC 67392 30 100.0 35 .............................. TCTCTTGTTGCTCCACGTCCAGACGTTTCTCGATA 67457 30 100.0 37 .............................. AGATAAATGTCAAGAACATTTAACAATTTCTTTCAAA 67524 30 100.0 35 .............................. CAACTTAGTTCTAATAAATATACTTTATTTTATGA 67589 30 100.0 34 .............................. ATAGATTAATTGTGGCATTTTTAATCATTTGTGG 67653 30 100.0 34 .............................. TTCCCACAACTGCATTTTAATCGTGATAAGTCTG 67717 30 100.0 38 .............................. TATCACTAAATTTAAGACTTAATACTTCATTTTTACGC 67785 30 100.0 33 .............................. AAACGTGACGGCGTGAGCGTGCCATTACCTCCG 67848 30 100.0 35 .............................. AATTTATATGGTTGCGTATTCGTTCTTGACGAGTG 67913 30 100.0 38 .............................. CATAGACGTCATAAACCATTTTAGGCGTGGAATGCCCC 67981 30 100.0 34 .............................. GTATTATAACCTTCCTCGAATGACGGATATATGT 68045 30 96.7 37 ....A......................... TCGGCTCGCTCGTTGCGTTCAGCTTTTCGCGCTCTGT 68112 30 96.7 37 ....A......................... TGTCTGGGATATTTTGCCTTACAGGGGCATCTGCCTA 68179 30 96.7 38 ....A......................... AATCAAATTGCCAAACTGCACCAACCTCGTTATACTTA 68247 30 96.7 36 ....A......................... ATGTTTGGGAACTCTACTATTTCGCCGTCTTTTGCA 68313 30 96.7 35 ....A......................... AAATTTTAATTTCCCTTAACTTTTCTACTAATTCT 68378 30 96.7 36 ....A......................... ATGCGATTAAAACGAAGCAAAAACAAAGCCTACCAA 68444 30 96.7 36 ....A......................... CTATTTATAATGCCTCTATTTGTGCTTGGTACACCA 68510 30 96.7 36 ....A......................... TTTCATCTTGTGCGTTTTCATCTTTTTGGCTATCAA 68576 30 96.7 33 ....A......................... ACAATGATACGTTTGCCAAGCTAGAGCCGTATA 68639 30 96.7 35 ....A......................... AACGATATAAACACTTTAGGGCTGAAAGCAAAGGC 68704 30 96.7 34 ....A......................... GGTTGTATAGCTCGCCGTTGTTGGCTATAATGTA 68768 30 96.7 37 ....A......................... TTCAGTAAATGATGACAAGATCAATCAAATACAAAGT 68835 30 100.0 36 .............................. AACACTTTGAGCCAGTCAATGGCTTGAAAAATGAGC 68901 30 100.0 36 .............................. AAATCAAATGTAGAAGCGACCCCACCAGCAACAACA 68967 30 100.0 35 .............................. CCAGTCAAAAAGCCAAGCATACGATTTAATTTAGC 69032 30 100.0 37 .............................. TCTCGTTTGATGCGCTATACTTTGCAGTTATCATCCG 69099 30 100.0 35 .............................. GTTCTTGTGCCTTTTCAAGGTATTTTTGCTCTTGC 69164 30 100.0 36 .............................. TGTTTTTTTCGAGTACTGAAGACAAAATCGAACATT 69230 30 100.0 36 .............................. TTTCGTAGCCGTTTAATAGTAAAACGATCGTATCGT 69296 30 100.0 35 .............................. GCGTTTTGGAGTAGCTATCACGGACTAAGCTTTCA 69361 30 100.0 35 .............................. GTGCTTAATGCTTTCGCTAGCAATTCAGCGCCTGC 69426 30 100.0 35 .............................. AACACATTTTTAAAACTCATTGCAAATCAAAAATC 69491 30 100.0 35 .............................. AATTTGGCTATTCAAAATTTAAAAGATAATGATAT 69556 30 100.0 38 .............................. GCCCAGGCATCAAAAGAGTCAATGCCTTGATCTTTTAG 69624 30 100.0 35 .............................. AAATAGTCCGCTGCCTCGATCTCAACTATCGCTGT 69689 30 100.0 35 .............................. GTGAAACTGATAAAATCTTTTTAAAAACTAAGCTT 69754 30 100.0 37 .............................. ATGCAGGATCGCACTCTTTAGGTTTGTTTGGGCTTTT 69821 30 100.0 35 .............................. ATGAAAACGTTTCAGATTATGCAATGCAATATCAA 69886 30 100.0 35 .............................. GCGATATATGAAAATAAAATAATCGAAATGTTAAA 69951 30 100.0 37 .............................. TGCTGAAAAGTTGGGCTTTGTTTGGGCTGATATTGTT 70018 30 100.0 35 .............................. ACATTAGGCTCATAATTCCACTGCTCTTGCTGTTG 70083 30 100.0 36 .............................. AAATCAAATGTAGAAGCGACCCCACCAGCAACAACA 70149 30 100.0 35 .............................. GGGATGAAAAAGAAGTATTTAGTCCTGAAACAATA 70214 30 100.0 36 .............................. TCCCAGTCGTAATGCAAAGCGATGACGACCCAAGAT 70280 30 100.0 37 .............................. TATGTATCTGCAAGGCGTGCCACTGCAAAGAGTGAGC 70347 30 96.7 35 ....A......................... TAGCGATGATAAGAATTAATAATTTTCTCATTTGT 70412 30 96.7 36 ....A......................... TAAAGCAAGGCTAACCTCCTTTTCGTCCTTGTGCTT 70478 30 96.7 35 ....A......................... CTAAAAAGTACTATATGCACTCTACTAGAATGACT 70543 30 96.7 36 ....A......................... AATTGTGTTTGTTTCATAATAATGGCATCGTAGTTT 70609 30 100.0 36 .............................. TGGCAAGGATTGCAGATAGATTTTCTGCCAAATTGG 70675 30 100.0 35 .............................. TTCATCTTTTTTAGTTTTTCATACTGACGGTGTTG 70740 30 96.7 34 ...........................C.. CAAACTACAAGGGTATGAAAAAAATCAAGAAAAA 70804 30 100.0 37 .............................. GAGACAGAAGAAGCTAACGCTTCTACGTGCGTGCGTG 70871 30 100.0 36 .............................. GATCTCTAAAATCAAAGTCGTTTGCACTAGTGGCCA 70937 30 100.0 35 .............................. CCGGTAAAAATCAAGCAGGTCATAAGGCTGCATTT 71002 30 100.0 34 .............................. CAATTAGAGCAAGAGCTGGGGTTTGCACCCTGCC 71066 30 96.7 34 ......T....................... ATGCAACATTTGCAGCACCATCTATGATACTAAG 71130 30 100.0 37 .............................. TAAAGCACGTCGGCGATAAAGAGAAAATCGCACTTTT 71197 30 96.7 37 ...............A.............. CCTGAAAGCGTGCAGACTGGCACATTTATGTTTTTAG 71264 30 90.0 0 ..............T..........T...T | ========== ====== ====== ====== ============================== ====================================== ================== 65 30 98.9 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGTATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGTGAGACGCTCACGGTGGGTGGTAGGGAGCTAACGTGGAGACAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGTATCTGCGAGGACGCGCCCTATGAAGGCTTTGGGTGGGAGTGAAATCGCATTTTATAAAGCTTTTTTTAAGATTTTAGAATGCTTGAAATTTAGGGCTTGGCGTATTTATACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTTCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : TCTTAAAAAAAGATATCCTTAAGCAAAAAGCTTAAAATTAAACTTTAAATTTAGTTTGACATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGATTTGAAACTACGTCTTTGCGATCAATTATATAAGGTATGATGGCTGCGTGGCGAGCTCTCTTGATCGCTTTTTCTACCATCTCTTGGTATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAGCAATACTTCAAAAGTGAAGTGTCTTTGTAGTCTATAAAATCAATCTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTTTCTTCATAATACTCTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : ATTAAAATTTACTCCGTTGGAGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 12455-10040 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUB010000016.1 Campylobacter concisus isolate 2009-118452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 12454 37 100.0 36 ..................................... TTGCAAGTGTAGAATAGTCAAAGCCCTCTAACTCTT 12381 37 100.0 41 ..................................... AATATGTCTTCATCACATTGACAACCGCACAATTCGACTTT 12303 37 100.0 39 ..................................... AAAGTCTGATCTTTGCGGATATAACCACAAAGAGTGTGT 12227 37 100.0 40 ..................................... TCTTCATTATTTGCCAAGAGTTGACTATTGATCTGATCAA 12150 37 100.0 44 ..................................... ATTTCTCCTATATTTTCAAGTGTTTCTTGAATAAAATTTGACAT 12069 37 100.0 43 ..................................... ACTATGAAAGTTTCGGGCATGATCTATAAGACCACCACTCCAA 11989 37 100.0 38 ..................................... TTCTTTTGTAAACTCAACCATACTTGCCATATAGTCAA 11914 35 94.6 40 .................--.................. AGTCAAGAGCATAAAAGTTAAGTTTGAATTCCTTAACTTC 11839 37 100.0 39 ..................................... AAATAATTGACGGCGCGCTCTGGGAGCGTGGCAAAAAAG 11763 37 100.0 40 ..................................... CTGAATTTAAATAAGAGGCAAGTTCTTGTAGGCTTACCTC 11686 37 100.0 38 ..................................... TTGCTCCTTTATAAAAAAATTTTTCTAAAAAAAGATTA 11611 37 100.0 38 ..................................... GAAAACTAAGTTTAAATTCCTTAATTTCCTTGCCATTT 11536 37 100.0 42 ..................................... GATATGACTTGGAACGCTAGGTTCCAACTCGAAAAATGCTGG 11457 37 100.0 40 ..................................... GCGCCATTGCATTCGCCAGCCAAATTGGCACCTTCGACTT 11380 37 100.0 37 ..................................... ATTATAGCGAAAGCCGAAAAAGCTAGGACGGCTAAAA 11306 37 94.6 38 ..TA................................. AATGTGAAGAATTCCCTTGTTGGACAATTTGGTAAATT 11231 37 100.0 36 ..................................... AGAGATTTTCTCTTTTCCACTTTTCCTATCTATGAA 11158 37 97.3 38 ....A................................ ATCTTTATAGTCATCGCGTCCAATAAAGACAATTTTGA 11083 37 100.0 34 ..................................... TCAACTCTGACCATCCGTAGATTGTATTGTTATT C [11068] 11011 37 97.3 39 T.................................... ACTAAATTCTCTAGTGGGAAGAAAATCTTAGCTCTGCCA 10935 37 100.0 40 ..................................... AACATCCCAGTCGTCAAAAGCATAATCGAAAAAGCTGAAA 10858 37 97.3 41 ..............C...................... TTTTGAGCATTGTAGCGCTCAAGGGAAATTGTATCCCCTAA 10780 37 97.3 44 ......................T.............. GTGTTTGCTTCGATTTTTAATCTGTTTTCGCACCAGTTTGGCAC 10699 37 100.0 41 ..................................... GCTACCCAACGATCACCACGACGCTCAAAAAATTGAACGTC 10621 37 91.9 40 ..TA................G................ TATCTCATAGTAGTATTCATCATCTGAACTTGATTTATAA 10544 37 94.6 42 ..TA................................. TTCTGAATTGGTATTGTTAGCCTAGAGCTACCTTTACGTTTC 10465 37 97.3 42 ................T.................... TTTTTGCAATTGTTTTACTACAACTGGGTTGTTCAGTAAACT 10386 37 94.6 41 ..TA................................. ACGCCGGCCGAGTTAAGTTCAATAAAATATTCAATTTTCTC 10308 37 97.3 39 ...C................................. CGTTGTCGTCGTCACCAAGGAAGTTAAGTTTAAATTCCT 10232 37 94.6 38 ...C.......T......................... GTTTGATATGCTACATACTCTATTGTTTTTTTAAAGTA 10157 37 91.9 44 ...C..........C....A................. ATTTGTATTTTTCTCAACCATATTCATAGCAAATGAGTGCCTTA 10076 37 94.6 0 ...C................................T | ========== ====== ====== ====== ===================================== ============================================ ================== 32 37 98.0 40 ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : AAAGCTGCATGGCTAAAAGCGAGACCTTAGGCGAGGGCAAGATATTTTGCCCAAGCGACACCTATGTCTAAGCGCCTTTTTTAGGGATTTGATTTTCGAACTTTTCTAAATTTCAAAACGCCCTTTTTACCGCATTTTTATATTTTATTAAGTTTCAAAAACTTCGAAAATCTCAAATTTCTCTATCTCAAAAAAGACTTTCTCGAACTTTTGCATTTTTGCACTTTTAAAGTTGCCTTTTTTAGGCACTTAGCATATAGCCCAAATTTGCCAAAGTTCGAAAATCACACAAATTTTCACTTTTCATTTTAGATTTTCGAACTTTTTAGCCTTTATAAATGCCCTTATATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCAAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAAGCGTTTTTTGGGCT # Right flank : AGACATATCTATCGAGCATAGTTCTCAAGCATTAATTCATAGACATATTTTATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCACTAAATTGACTATATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCCTCTTTTGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGCCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //