Array 1 25390-26428 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQNW01000234.1 Escherichia coli strain EEPERB127 NODE_1458_length_60994_cov_46.749237, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 25390 29 100.0 43 ............................. CNNNNNNNNNNGGATTAATCCGCGGCTGGCGATATCTCGCAGC 25462 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 25523 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 25584 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA 25645 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA 25706 29 96.6 37 ............................N NNNNNNNNNAATCTGCTGCGCACAAGTTACACGGCGC 25772 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 25833 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 25894 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 25955 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 26016 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 26077 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 26138 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG 26199 29 100.0 41 ............................. NNNNNNNNNNGATGACCTGTCGCTAAAACTCGCCGCGTACA 26269 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 26330 29 96.6 41 .A........................... GNNNNNNNNNNGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 26400 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =========================================== ================== 17 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GTCCGTTTGGTCCACCAAATGTTTGATGCTTCAGTGTTCCCCGCGCCAGCGGGGATAAACCNNNNNNNNNNCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77507-78096 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQNW01000217.1 Escherichia coli strain EEPERB127 NODE_1089_length_78500_cov_48.089695, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 77507 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 77568 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 77629 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 77690 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 77751 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 77812 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 77873 29 100.0 44 ............................. GCGNNNNNNNNNNAATATTCACAATGTGGGATATATCCGATCAC 77946 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 78007 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 78068 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ============================================ ================== 10 29 99.3 33 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATGGAAGGTGCGAACAAGTCCCTGATATNNNNNNNNNNCGCAGGGATTCGTACAGTCAAAAACGCCGAGTTCCCCGCGCCAGCGGGGATAAACCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //