Array 1 375788-374620 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046815.1 Vibrio cincinnatiensis strain 1398-82 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 375787 28 100.0 32 ............................ ATAATCATTGTTTGCAAAGTAGTCACGTAGAG 375727 28 100.0 32 ............................ TAGTGAAAATTTAAGAACAGGCAAATCACCAG 375667 28 100.0 32 ............................ TTAGACGGTCAATATATCTATTTAAAATCGGC 375607 28 100.0 32 ............................ TTAACTAAGTAACCATCGGGGGTTATATGAAA 375547 28 100.0 32 ............................ GCTCACGCTCTTTCGGTGGTCAACGTATTTCC 375487 28 100.0 32 ............................ TTCGAAGATAAAGATGTAGAGCAGCATCCCCC 375427 28 100.0 32 ............................ AACTCGCCACTGAGGGGTTATTGTCTGGTTTG 375367 28 100.0 32 ............................ TCTAACACGTAGTAGGCTTGGTCTGAGTTGAG 375307 28 100.0 32 ............................ AGTAAGCGCCTTGAGTAAAATAGAAGAATTTT 375247 28 100.0 32 ............................ CCGAAGGAGCCACCAACCGCGAAAAAGCTACG 375187 28 100.0 32 ............................ ATGAAGAGGTGCTGATCACCGATTTCGTCCCT 375127 28 100.0 32 ............................ ATTGTAGATGTTTGGGGGCGTCCGATTGAGTC 375067 28 100.0 32 ............................ TATGCGCGAGGGCGCTTTACCCCTGGAACAAT 375007 28 100.0 32 ............................ CTGTAGAACAGGCTGCACGCAGCACATATTAC 374947 28 100.0 32 ............................ TCAAGCAACACTACGAATAACAATACATCGGG 374887 28 100.0 32 ............................ TACTGAGTACAAATTGCCATTTCCTTGGACAG 374827 28 100.0 32 ............................ GATAAGCACTGGGGCGGCCTCCTTAACTAAGT 374767 28 100.0 32 ............................ TTAAAGGGGTATTCGAAACAGTGTGAGTATCG 374707 28 100.0 32 ............................ TTGCGGCCCACGCGCCCCTTGATGAATGACAG 374647 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GATGTAAATTACGTAAGCTTTGTGCGCAAGCAGGTGAAATCGCCCGAGCGAATAGAGCGGGATATGCAGCAAAAAGCCGCGCTATGGGCCGCAAAATCCGGTAAACCGCTGGTGGAATGCCTAGCCGATTTGCAACAAAGCAAGCCGACAGCCTTATGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACGAAGCAGCGCTCCCCTGAAAAAAGCAGTAAGTTCCCGCTGTTTATTCAGATGCAGCAACAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAGTGGGCAATCAGCATTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAACCAATAAATACAATGAGTTACAACTGGTGGTTTTTTATAAGGTAAAAATGCAATTTTTATCCTAACTGACTGTTGTAACTTGTTTTTATTGATTTATTCTATA # Right flank : ATCGCCAGCACGTTGATGGCGTGGACGATATCGTTCACTGCCGTATATTGTGCACCTAAACTTCTAAGCTAGTATCAGTCAGGATAAGACATTAAGAGAATGCCACCCCTTTATATCGCTAGATTTAGAGACAAAAAAAGACGTCCTGGGACGTCTTTTTTCTGGAATTTGGCTCCCCCTGCGGGACTCGAACCTGCGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTAAGGGGGAATGGGTTTGTGCTGCGGATGGTAGCTACTCTGTTCTCATGTGTCAACTTTTGGCATTAAAAAAAAGAGAATTTTTTTGCGTAGAAGGCTTTACTTTTCTGTATCCCTTACCCCATTTGACCTCGATTCAGTTATCCACCAAATTTGTGGATAAGTGTGTTGATGAATGTTGAGTAATTATTTTATTGATGTTTTTATCTTAGACTCTTTAGAGTGAAATCAGTTGATTTTCTCTATAACTTTATGTTTTTGTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 290706-289657 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046816.1 Vibrio cincinnatiensis strain 1398-82 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 290705 28 100.0 32 ............................ TCCACCGCGCAAGTGCGGAGCAACAACTTCTG 290645 28 100.0 32 ............................ AAAAGCAAACGAAGCGGAGCCGCTACCATTTT 290585 28 100.0 32 ............................ CGATTCGCCAAGCTCGCGTGATAACCCATATC 290525 28 100.0 32 ............................ AGCAAGGGCAATAGTTTGACCATATTTAGTAT 290465 28 100.0 32 ............................ TTCGGTTAAAATTACTCGTGTTGATATTGCTT 290405 28 100.0 32 ............................ ATTGGTGTGATTGATAGTGATTACCGTGGTGA 290345 28 100.0 32 ............................ CTAAAAAACGTCCGGTTTATTTTGAACGTCAC 290285 28 100.0 33 ............................ ATAAAAAAGAAGGGTGGTTTTAATTATGGCTTT 290224 28 100.0 32 ............................ CTCACCAACAAGCAAATACTCCGCAATGCCTT 290164 28 100.0 32 ............................ GCTCGGCAATAGCGATAAATTCGCCACTCGAT 290104 28 100.0 32 ............................ GTCTTGGGCAACGAAGCCAGCATGAGTGAATA 290044 28 100.0 32 ............................ ATTACCGAAGAAGTCGTCACTCACTCAGTAGA 289984 28 100.0 32 ............................ GGAATGCAAGCGCCTTATGCGATTAGCAACAA 289924 28 100.0 32 ............................ GTTTAAGCCCTCTCGAAACTTTTTTCGCGCCG 289864 28 100.0 32 ............................ TAGATTAGTCAATGCGTTACATGAAGCGCGGC 289804 28 100.0 32 ............................ AACATCAAGATTCCCTCTTGGACGGCATCGTA 289744 28 100.0 32 ............................ GGGAACTGGGAACGTGACCTCGTTTTTTTGAT 289684 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CCAACCAAGAATGGCAAATGCTTATCGACAAATCTAAATCGAGTTCCTTGTCAACACTCGCATTTTACCTGACTGGATGAACAAGGTTTCCTGACGATACAGCGGAAGTGTATACTGATATTTGCCTAAAATAATGTTGGCAAGCAGACTTTCGGTGGCGAAGCTTTAGGGATGATGCTTATCGGTGCGGGTTGTTGGTGAATCCTAACGACTGCTGATTTGGGGATTTTTACGGTTGTTTATGAGCTACACATTTGCTATATCAATATAGTTTGTTGCTGTGGTGTTTGTTTGTAATATATTGATATATAAAAATAAAGTGTTGTCTGCGTTGGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTTTATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTGGTAACTTTGGCATTTGGGATTGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGTATTTTTGGTTCGGGTGAGCATTTGAGGTGACGGCTGTTTAGTTTAAGTGCAGCGTTTTGCGTTACTTGCCCCTTAATGCAGCGTTATGTAACCGTAAAGAAAAAGACCGCAATATATTGAAAATTAAAAATATTTTTATGCTTTTGCTTTTTTAAGTTGGCTTCTACTTCACATGTTTATGGTTTTAACTTAGTGTTTTAATTGGTTATTTATAAAGTTTGTAAAGTCAGTCTTATTCATGTTGGTTTCGTTTCCGTCTTCTTGTTCTTCGAGTTTTCAGTCTTTTCTCAATGGTTAAGTGAGTTTGCGATAAGTTTGGTGGCTGTTATTTTTTTCTTTGAACTAGGGCTCGCAGTTTCGTCGTTGTCACGCAAATTCTACTGGGTTACTGCTAACTTTTCATGTAAGTTAAACGATATTTGGCAATGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 317199-316704 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046816.1 Vibrio cincinnatiensis strain 1398-82 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 317198 28 100.0 32 ............................ CAATGAATTGCAGTTGCGCGTTTGCTCCCTGA 317138 28 100.0 33 ............................ ATCATGGAGTCACAGCGTGACATCGTTGAAATT 317077 28 100.0 32 ............................ GTCAAGCATCCCCCAGCGATTAGTAGGCCCAA 317017 28 100.0 32 ............................ TAATGGCAAGATTTACGGGATACCTTTCAACT 316957 28 100.0 32 ............................ CAAAATGAGGCAGCTAAAATATCACACGCAAC 316897 28 100.0 32 ............................ CTGTAGAGGGCGTGAACTGGGGCAATCAAGCA 316837 28 100.0 32 ............................ AAGAGAAAATAACAGGAAATAATATTATCCCT 316777 28 100.0 18 ............................ TTGATTTAAACATAGCAG Deletion [316732] 316731 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 30 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATGCGACTTTCCTTAGAGACTTTCAAATCTTACCTGAGTTTCAGGGCATAGGAATTGGAAGTAAGTGTCTTGATTTAGTTGTTAGATACGCTTTAGATAGACAATCCATTAGGTTAGTTCTGCGAGTTTTTAGTGAAAATCCAGCGATCAATCTGTATGAATCCAAGGGCTTCGTGAGAACATCTGAAGTTAACGGGTTGGTTGAAATGGAGTTTCCTTTAAATTCAAACACATAACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTATTATGCGTTGGTTTTTGTGATTACGGTGTTATGCGGTGAGTTGGTAGTAGCGTTGTCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCACCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGATAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : TATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGACATTTCTAGTTTGGACTGGCATTTGAGGTTACGGCAGGTTAGTTTAAGTTCAACTGTTAGCGTTGCTTGCCCCTTAATGCGGCGTTATGTAACCGTAGAGAAAAAGCCCACAATGCATTGAAAATTAAAGTATTTTTATCCTTTTGTATTTTAAGATAGAGCTTCTACTTTGCATGTTCGATACATTTAACTAATTGTTTTAAATGGTTATTTTTAAATTTATAAATTCAGTTTTATCCATATTAGATTAGTGTTCGTCTTCTTATCCTTCGAATCTGTATTCAGTACTTAATGGTGAAGTTGGTTTGCGTTCAGCTTGTCTATAGTCATGATCCGCAGACTCCAGTTGCTTTTGTGGTTGTCAGAGTTTTTTCTACTGGGTCAATGCTGACTTTTCGTGTAAGTTAAATCGTGTTTGGCGATGCTGTTTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 372444-371755 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046816.1 Vibrio cincinnatiensis strain 1398-82 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 372443 28 100.0 33 ............................ ATTTCAACAAATGGATTTGATTTTAGCCCGTCT 372382 28 100.0 32 ............................ ATCGCTGCCGTGATTGCATTAATTGCGCGCAC 372322 28 100.0 32 ............................ TAAACCAGAACCAGAGCTTGAGTTGGAGAAAG 372262 28 100.0 32 ............................ AAAAAGGGTGGTCGTTTGAGTCACTGGGTCAA 372202 28 100.0 32 ............................ TTCCGGCGTGCGGATTACAATTCGAAACTTGA 372142 28 100.0 32 ............................ ATTTGGCAGTACCACTGAGTGAGCCAAAAAGG 372082 28 100.0 32 ............................ ATTACGCACTTTAGGAGCAAAACCACGAGAAC 372022 28 100.0 32 ............................ CGACTGAGCGACAGAACTCAAGAGACAATTAT 371962 28 100.0 32 ............................ AAGTTGCCGAAGAGCACAATAAAACCATTTTA 371902 28 100.0 32 ............................ TTTAATGATGGAAATAAGCGTACCGCGTTTGT 371842 28 100.0 32 ............................ GATCATCTTTTCAGCTTCAAATGTCCCAGAAA 371782 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAGTTAGAATCGAGTGCAAGACCATGTTTTATCAATTCTCCAAATTCACAGGTAGGTTGAAATGTTTACTCAAAAAGAACGCCGATATATTAAAAACTGTTTGAAAGAGAAACTTGAGCGAGAGCAACTTCAGTTGTCTCAGATGGATGAGGATACTGATGAATACATGGAAAAGGCAAATGATCTAATGGTTCTGGATTCACTAATAGCTAAACTTAGTGATTAAACAAACATAACAAACGCTTCAAGAAGGACAGCCAACGCGTGGCATTTTTACTATGCGTTGGTTTTTGTGGTTACGGTGTTATGAGGAAAGTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTTGTTGAATCCTAACATATTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTACTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : ATATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGCAGTTTTGGTTTGGATGCGCATTTGAGGTGACAGCTGGTTAGTTTGAGCGCAGTGGTTTGCGTTGCTTGCCCCTTAATGCGGCGTTAGGCGATATTCGTGAAATTACACAAATGATTCGTTGATTCTTAATCGTGATTCTTTGAATTATTTTATTTAATCAATAAGTTGTTGGAGTTATCAAGTTAGTAGCCAAAGAAAATATTATCAATTTTCTGTCCTCATAAAAGTTAACGATCGAGTCTGTTCATATTTGATAAGCTTTGTGCTTCTCGTTCTTCGAGTCTTAAGTTCATCCTTAACAGTTGAGTGATTTTGCGATGAGCTTGGTGGCCGTGATTTTTTTTGAACTAGACCATGAGTTTCGTTGTTGGCAAGTGAATATTACAGGGTCAATGTTAAACTCACATGTTGTTTTAATTTGGTTTGTTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //