Array 1 33101-34533 **** Predicted by CRISPRDetect 2.4 *** >NZ_NINX01000009.1 Pigmentiphaga sp. NML030171 NML03-0171_S19_L001_001_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33101 29 100.0 32 ............................. GTTTCATCGAACGCCTGCCCCATTGCTTCTAG 33162 29 100.0 32 ............................. TACAGCGCACGCTCCATGCCGGTGAACCCCAT 33223 29 100.0 32 ............................. TCATCGCTCCCATTCCGCAGCCATGGCCTCCC 33284 29 100.0 32 ............................. CCCGCCGGCGCAACGAGCAGGTGGAGGCCGCA 33345 29 100.0 32 ............................. AGGACCGACATGACCTACATCGTGAACACCAG 33406 29 100.0 32 ............................. TGACGGAAATTGGAATACTGCACGTAGAAATC 33467 29 100.0 32 ............................. CCGGCGCACGTTCTCCCGGCGGCGTTTGATGA 33528 29 100.0 32 ............................. TCAACTTGAATGATGACGTGCGCGCGGTGTTT 33589 29 100.0 32 ............................. CCGTACCCGATCAGCTGGGCCGAACAGGCCAC 33650 29 100.0 32 ............................. CGGCGGACGATTTCCTCGATTTCGGCATCGGT 33711 29 100.0 32 ............................. GCTATCGGATGTGCGAATCGAGCCGAAGTCGC 33772 29 100.0 32 ............................. TGTGGGAATTCAATTGGCGCGATGCGGTGTGG 33833 29 100.0 32 ............................. CTACGCAGGACCACGGCGCGGTGCTCGGTGAG 33894 29 100.0 32 ............................. GCGATGGCGCCCAGGGCGGTCAGCGACACGCC 33955 29 100.0 32 ............................. ATGAAATCCTGAAGTACCAGAAAAGTGACTGC 34016 29 100.0 32 ............................. TTGAAATATTCGCCAGCCTTGGTGACACAGGC 34077 29 100.0 32 ............................. CCGGGACCGAGGTCACGATCGCAACCGGTTCC 34138 29 100.0 32 ............................. CACGTGCGCATGACCTTCGGGAATGTGTCCGC 34199 29 100.0 32 ............................. AACAGCGCGGCGCCGCCGGCGAACGCTTCGAC 34260 29 100.0 32 ............................. ATCTCCGGCCAAATCGCGGGGAACCAAATCGC 34321 29 100.0 33 ............................. CTGTATCGCTGGGAGAACAGCAGGGCGCTGACC 34383 29 100.0 32 ............................. TCCAGCCGTTCCGCGTTGAAGCGGGCGAGCAC 34444 29 100.0 32 ............................. AATCAAGCACTTACGATTGCTTGTGACAACCC 34505 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATGAACCG # Left flank : TCGACGGCTTGAAGAGGTCAGGTCATGCGAGGCTGAAGGACGCACTCAATTCGTCCCTGTCCATCGAGAGCCGTTTCGATCTGGCCTACAACGCCGCCCACGCACTTTGCCTGGCTGCGCTGCGATGGAACGGGTATCGGTCAACAAATCGCTATCTGGTTTTCCAATTGCTACCCCACACATTGGGTCTCGGACCGGCGGTCTGGCGAGTGCTCTCGAAGTGTCACGACATCCGTAATCTCGGTGAGTATGAAGGAGATTTGAGTGTCGATGATCGGATCGTCACAGACCTTGTGGCGGCGTGCCAGGTAGTGGCTGACAAGGTCGATGCCCTTGCTCCGCTAGGTTCTGTCCGCTGAGAAATAAGCTGCAATGTCTGGTTGACATGACGAGTTGAAGCCTGTTCTTTCGGCTTTCTAACGAGTTGAGTTTCCTGGAAGAAAGTTGGTAGATTTTTGGCGTCCGATTTTCTCTTTTGAAAACAATCGGTTATGTTTGGT # Right flank : GATCCATATGGCCAGAGTCTTGTCCGTGGCCCTTTCTGTGCGTGAGCCAGCATAAGCCACTGCCACACGCCGTAGACGGACACTCGCACAAGGATTATGGTATTCACTAGTATTACCTTCGAATATACATCCCATCATGGCCAAGACCATCAAAGCTCAATGACGACTTGAAAGCTCGCATACATCGCCTTGCAGATCAGCGGGACCGTTCGGCCCACTGGATCATGCGCGAAGCAATCACGCAGTACGTGGAGCGCGAAGAAAAGCGCGAGGCGTTCAAGCAGGATGCGATGCGTGCATGGAATGACTATCAGGCCAACGGATTGCACGTGACGCTTGAAGAAGCGGATGCCTGGCTGGCGAAGCTCGAAGCGGGTGAGGATGCGGAGCCACCCAAGTGCCACGAGTGATATGGACGCCACTGGCACTAGACGATGTGCAGAACCTATATCGCTTTCACGCGCAGAAGGATATAAGCGCCGCGCGACGTGCCGTACAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 44728-45794 **** Predicted by CRISPRDetect 2.4 *** >NZ_NINX01000009.1 Pigmentiphaga sp. NML030171 NML03-0171_S19_L001_001_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44728 29 100.0 32 ............................. ATGGGCGATGCGCAGACGCTGCGCGTGTTCGC 44789 29 100.0 32 ............................. TTCTTTGCGAGCATCGCGCTCCCCGCTCTTGG 44850 29 100.0 32 ............................. TACGCAAACATGACGCCGACAACCGAGGTTAT 44911 29 100.0 33 ............................. CGCCAGAACCCAGGGTTTCTCCTGTTCAACACC 44973 29 100.0 32 ............................. CGCACACCTGCAACCGAGAAGGGGGCGCAGCC 45034 29 100.0 32 ............................. TCGTCGCGATCTTTTGCCTTATCGGGTGGTCG 45095 29 100.0 32 ............................. CCGGCGGCCAGCTCGTAACGGCAGGGTGGACC 45156 29 100.0 32 ............................. CAGGAATACATTCGCCGCGGCTATGTCCGCGA 45217 29 100.0 32 ............................. GTCGCCTCGAGGAAACACCTCCAACGCCGTCT 45278 29 100.0 32 ............................. TGTTTGATCTCGCTTGTTTCGGTGTCCTCGAT 45339 29 100.0 32 ............................. AGCCTGACAACCCCTGGCTGTGGTGCCCGCAC 45400 29 100.0 32 ............................. GCCATCATCGCGCGCCCGCGCAACACGGCCCG 45461 29 100.0 32 ............................. ACCATGGACGAAGATCAGATCTCTGCCGAAGA 45522 29 100.0 32 ............................. CCCAAACCCTCCTTGCGGCGGCCCCGGTTGCC 45583 29 100.0 32 ............................. CAAAAAGAATTTCGTGAGGTAAACCGGAACCT 45644 29 100.0 32 ............................. CTACGCGGCCGATGCCGTTGTACTCGGTTCCT 45705 29 100.0 32 ............................. CATGCTGCCGATGAATTTTTTCACCAGCAGCG 45766 29 86.2 0 .A....................C...T.A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGGGAGCGGGGATGAACCG # Left flank : TCGGACGCATCATTCCGCTGATCGAAGATGTACTCGCGGCCGGCGGCATCCTGCCACCCGAGGCTCCTCCTGAATCCGTCCCTCCAGCCATTCCGAATCCGGAAAGCGATGGCGACGTCGGACATCGGAGCCGCTGATGAGCTTCCTTGTGGTCGTCACCGAAAACGTCCCGCCAAGATTGCGGGGGAGATTGGCCATCTGGTTGCTCGAGGTCCGAGCCGGTGTCTATATCGGTGACGTCTCGCGGCGCACGCGGGAAATGATCTGGCAGCAGCTCGACGCGGGGCATGAAGACGGCAACGTCGTGATGGCCTGGGCCAGCAACAGCGAGTCCGGTTATGACTTCCAGACGCTTGGGGCGAACCGCCGGGAACCGATCGACTACGATGGGTTGAGGCTGGTTGCGTTCATGCCGCCAGAGGGGTCGGCTCTTTAACAAGAAAGTTGGTGGGTTTTCGGCATCCGATTTTTTCTTTTGAAAACAGTCGGTTGTGTTTGGT # Right flank : ATGTTTCGCGCTCACGCATGAGCCCGGTGCGCTACCTGCTGCGCGATCCCCGAGTCATGGATTTTATATAGGTTTTCCTATAAAATAACCTATATCCGATAAGGCATAGATGTACACCATCAACTGGATGAAGAAGGCTCGCAAGCAATTGGCAACGGTTGGTACGCAGAAGGCCCGCGAAGCGATTGTTGATGCCGTGTCCACGTTGGTGGACTTGCCCAACGCCCAGAATGTGAAAGCCCTCACGAAGCATCAGTACGGTTACCGCCTGCGCGTCGGTAAGTATCGAGTGCTATTTGACGCGGATCATGAAATCCGAATCGTCGAAGTGCAAGAGGTGAAGAAGCGCGACGACCAGACGTACTGAAACCCCATCCGGGCAATAGCCCGGCGGAGAATGCGATGAGCACGAATCACACCATCATCAACACTAGCGACGGCCGGCCAGCCTTCGTTGTGCTTCCCTACGACGAATACATTGCGCTGACTGGCAATAAGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGGGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42004-43926 **** Predicted by CRISPRDetect 2.4 *** >NZ_NINX01000052.1 Pigmentiphaga sp. NML030171 NML03-0171_S19_L001_001_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42004 29 100.0 32 ............................. CGACAGGAATGGGTTGACCTTGCTATGAAGGG 42065 29 100.0 32 ............................. AATTCGCCCCTTTATTTTACCGGAAAAACAAC 42126 29 100.0 32 ............................. CGCAACTTCAGGCCTTCGAACTTCAGCCAGAG 42187 29 100.0 32 ............................. ATCAACACGGAGCCGATGACGATAGCGGAGCT 42248 29 100.0 32 ............................. ACCTCGCGCCTACCCTCGGCAACCATCGTGGC 42309 29 100.0 32 ............................. CCCGTCAATCGGGCAGTGAACGGAGCAGCCCG 42370 29 100.0 32 ............................. CCAACACCGAAAACCTACGGGCCAACACCGAG 42431 29 100.0 32 ............................. TCAGCGGAACTGGATCGACGCTTGCCATGGTG 42492 29 100.0 32 ............................. GGTGGTATCGCTTTCACGATCGCGGACGGCGC 42553 29 100.0 33 ............................. TATTATTTACGGTAATTGTTCCGGCCGCGAGAG 42615 29 100.0 32 ............................. CCCTATCAACAGCTATCACGGCCGTGGCGGCT 42676 29 100.0 32 ............................. CCAAGCCGGCACGGCCTCGGGTGCCTTGCAGA 42737 29 100.0 32 ............................. ATGTCCACCCAGGTCATGGCATATTTCTGCAA 42798 29 100.0 32 ............................. ATAAACGAACAATATGAATGTAGTCATACCTT 42859 29 100.0 32 ............................. TACGATCCGGTCGACACAACCCGGGTCTGGCG 42920 29 100.0 32 ............................. TGCTCTGCGTCTGGTATCGGCCGGACGGGAGC 42981 29 100.0 32 ............................. CCCCATTCATTGCGAACATCAACCGGGGCCGG 43042 29 100.0 32 ............................. ATGTTTTCTATAGCCTCGACAAGGGATGGACA 43103 29 100.0 32 ............................. TTCGTCCCAATGGATTTTGTGGGCGACATCGT 43164 29 100.0 33 ............................. CGATTTGCAGGGTGAGGCCCGGTTTACCGGGTA 43226 29 100.0 32 ............................. TTCAGCCAGGACAACCACATGGCCGCGAGCCT 43287 29 100.0 32 ............................. TGGTCAACCAGCTCAGGTCGTTTGACCATGCC 43348 29 100.0 33 ............................. CTGAACGAAGGGCGGCTGCCGAAACTGTCCACC 43410 29 100.0 32 ............................. GCCTACCTGCTCGACATGCAGAGCGCCCGGGA 43471 29 100.0 32 ............................. TCCAGGCCAAGGCCGCCCGCCAGGGATATGCG 43532 29 100.0 32 ............................. CCGCCACGCTGTGCATGCTGGAACGCCTGCAG 43593 29 96.6 32 ............................A AGAGAATTGCTGGCGTCGAGCGACAGGTCAAG 43654 29 100.0 32 ............................. CTCACGGCGAGCTCTTCCGCGGCGTTCACCCA 43715 29 100.0 32 ............................. GCAAGGTGGTGAGCATCACCATCACGGACCCC 43776 29 100.0 32 ............................. GCGCTGAATTCGACGCTGGGCAAGATGGCCGC 43837 29 100.0 32 ............................. GAGTTCGGCGACGAGTTCGACCGCTCCGTACA 43898 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.8 32 GTGTTCCCCGCGGGAGCGGGGATGAACCG # Left flank : CCGAGACCGTCGCCGCCAACAAGGGCATCGGCAACGTGATGATGATCGCAAGCGGCAACTTCGACGTGCCGCTGGTGTTCGCCGGCCTGTTCATCCTGGCGGTGCTGGGCGTCGCGCTGTATGCGGTCTCGGCCCTGATCGAAGTCAGGCTGACAGGGTGGGCGCAGCGCAAGAACGACATGGCCATGGCGTGATGCGGCCGGAGATTAGACGTCTCATGAGCACCACGGCTGGAGTTGGGCGTCATCAACCGCCGGTTGCATGATCGAGGAAAAAGCCGCCTTGAGTTAAGGATGTGAGCGGGCTGTGCTTGCGGATGGAGCCTGGGTTCTCATTCCATATGGGACGTCCAGAGCTCGCATTTGTTGCGGCTGGGAGCTGATTGGCTATGATGGCTTGGGGACGATTTTTTTATTTTTCAGCTGGGTCTGGTTCTTTAAAAAATTGGTGGATTTAAAGAGGCCGATTTTCTCTTTTTAAAACAAATGCTTATGTTTGGT # Right flank : GGTCGGCTAGATGGGAAGCGTGGTGTAATCAAACACGCAACTGAGCGGCTTCGCGACACCAGAAGTGCCGCCAGCATCTGCGAGCCAAACGAAGTGAGCGGCGTAACTGCCGAGCCGGCCTCCGTCTTGTCGGGAACTACAATATAAGTGCCCTCGCAATGAATCCTGGAGGACGACCATGCGACCATCCGAAATTCTTGCATTGAAACGAAGCGCGGTACGCGAAGCGGCAGCTCGTTTCAAGACAGCGAATCCACGTGTCTTTGGTTCGGTTCTACACGGTACCGATCAGGACGGTAGCGATCTTGACATCTTGGTCGATGCTCTGCCCGGCGCTACATTGTTCGACCTCGGCGGCCTCCAGGACGAATTGGAAACGCTGCTTGGGGTGCATGTCGACTTGCTTACCCCGGGCGATTTGCCCATGAAATTTCGGGCCAAGGTTCTTGCGGAAGCCCAACCCGTATGAATCGCCTTCCTGACTATCTCGATCACATGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGGGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45561-47605 **** Predicted by CRISPRDetect 2.4 *** >NZ_NINX01000052.1 Pigmentiphaga sp. NML030171 NML03-0171_S19_L001_001_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45561 29 100.0 32 ............................. TGTCCCGTGAGCACATCGGCGTTCTGGGCATC 45622 29 100.0 32 ............................. CTGCGCCTCTACGGCTGGGGCGGCGGGGCGGT 45683 29 100.0 32 ............................. CGTGGGAATTATTGCTGCAACAGGTCTCGTTC 45744 29 100.0 32 ............................. ATCCCTGGCACAAAGCCCGCTCATAACCTCAC 45805 29 100.0 32 ............................. GCCGACTACAACGGCGACGGCGTGGCCGAATA 45866 29 100.0 32 ............................. TCGCCATCCCCGATGATATCGTTGCGCCGCCC 45927 29 100.0 32 ............................. CCCCCTGCGGCAACAGGGGGCGGGATACAACG 45988 29 100.0 32 ............................. CCAAACTCGACGGACTATGAGGAAATCATGGC 46049 29 100.0 32 ............................. CCGGACCAGTACGACACCGCCATGCGCCAAGC 46110 29 100.0 32 ............................. GTCTTTTCCGCAAATTCGACGTGCGCCGCGTC 46171 29 100.0 32 ............................. CGCTTCTGTTCAGATGTCGGGGCGCGACCTTT 46232 29 100.0 32 ............................. TCGGACAGCCATCGCTCGCAGATGGAAATGCC 46293 29 100.0 32 ............................. GGCGGCGAGGACGATCTTTTGATCGATCCGAG 46354 29 100.0 32 ............................. CTCCTCGAACGCTGCCCAGGGTTCATCCGGGA 46415 29 100.0 32 ............................. CGCCCCCTACCAAAATCAGACCTAGTACGATG 46476 29 100.0 32 ............................. CCCCACGGCAACGGGAGCCATGGCCGGGGCGT 46537 29 100.0 32 ............................. TCCGCCTGCCCATCGAGTTCGTGAACCTGGCC 46598 29 100.0 32 ............................. CGACCCGCTGTACCCTCGCCACGTTCCTGGCC 46659 29 100.0 32 ............................. CACGCCGGCGCTTCCCTGCCATGAGATTCAAC 46720 29 96.6 32 ............................T AGCGCCGCGGCCGCGCTTGGACCCCACAAGGA 46781 29 100.0 32 ............................. GCACCCTGCATGTCGCGGAACAACTCGATCAG 46842 29 100.0 32 ............................. CTACACCACGGCCGGCAGCGAAGGTTCCTACG 46903 29 100.0 32 ............................. CTGGCGCAGCAGGAGACCGAGAATGTCATCGA 46964 29 100.0 32 ............................. CCGCACCACCAAGCGGCGCTGTTCCGTCGCTT 47025 29 100.0 32 ............................. GTGGGATTCAGCGACAAACTCGTCACCCTGGC 47086 29 100.0 33 ............................. GAAAACAAGAATTACTCCACGTTCGCCCTTGCG 47148 29 100.0 32 ............................. TACAGGGGGATGTCGATGGTCATGGCTGCTCT 47209 29 100.0 32 ............................. TCGAACTGGGCCTCCGGGTCGCGTTGCAGCAC 47270 29 100.0 32 ............................. CTGCTGATGCGGGCGAGGACGGGCGCGGGATC 47331 29 100.0 32 ............................. TTCATCGGTCACAAAGAAGATGAACTCGAGCA 47392 29 100.0 32 ............................. CGGATGGTTATCGAACGAATCACATTGCACCT 47453 29 100.0 32 ............................. ACCATGGCGGGTTGACATGCGCCGCATTCGCA 47514 29 100.0 33 ............................. CATTGCGGATGCCGGTTGGTGCCGCAGGCGCCC 47576 29 93.1 0 .....................C......A | G [47593] ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.7 32 CTGTTCCCCGCGTGAGCGGGGATGAACCG # Left flank : CTTGGACGGATCATTCCCCTGATCGACGATGTGTTGGCCGCTGGTGGTATCCAGCCGCCCGAGGCCCCTCCTGAATCCGTACCTCCAGCCATTCCGAATCCAGAAAGCGACGGCGACGTCGGGCATCGAGTCGCTGATGAGCTTTCTCGTGGTTGTCACCGAGAACGTCCCGCCAAGATTGCGGGGGAGATTGGCCATCTGGTTGCTCGAGGTCCGAGCCGGTGCCTATACCGGTGATGTATCGCGCCGTACACGGGAAATGATCTGGCAGCAGCTCGATTCAGGGTATGAAGACGGCAACATCGTGATGGCTTGGGCCAGCAACAGCGAATCTGGCTATGACTTCCAGACGCTTGGGGCGAATCGCCGGGAACCGGACGACTACGATGGGTTGAGGCTGGTTGCGTTTCTTCTGCCAGAGGGGTCAACTCTTTAACAGAAAAGTTGGTGGGTTTTTGGCATCCGATTTTTCCCTTTGAAAACAATCGGTTATGTTTGGA # Right flank : ATTCGAGATCAGCCGTCGAATGGGTTCGTTCGAATGCTCCCGCTCAGGCTGGGCATGAGTCCATGCCTCCTCACTGCCTGGCTACTCCACCAGCTTCGTCGGCAACAGCACCTCGAACGTGATCCCTTCCTCCGATTTGCCCGCCGTACCGCGCTGCGAGCTGAAGTAGAGCCGGGTGCCGTCGGGCGAAACGGCGGGGCCGGTGATCTCGCTGTCGTCGTGGCCGACCAGCCGCATCACGGCCTGCGACGTGCCGTCGTCGCGCAGCACGCCGATCTCCAGGTTGCCCGCGTCCTCGGCCACCAGCATTTCGCCGAAGGAGGTGATGGTGATGTTGTCCGGTTCGTCGATGCTGTGGGTGTCGGCCGGGCCCAGTTTGCCGTCGAAGATGACTTCGAGGGTGCGGTGGGCGGTGTCGTAGGCCCAGATGCGGCTGTTGCGGGACGTGACGAAGAATACGATGCCGTTGAAGAACCAGATGCCTTCGGCCTTCTGGAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGTGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //