Array 1 18004-17709 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIE01000002.1 Thermocrinis sp. GBS K217DRAFT_scaffold00001.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 18003 29 100.0 38 ............................. TGTTTTAATGATTTGTTTGAAGTTTTTGAAAACAACAT 17936 29 100.0 39 ............................. CTTCCAACCACATAATTATAGCCCCTCTTGTAATTACAG 17868 29 100.0 36 ............................. ATGTTTATTCCCATCCTCAGAATCTCCGTGTAAAGA 17803 29 100.0 37 ............................. AAATATTCCAAGGAATAACGGGGATATGCCAAAACTA 17737 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 100.0 38 GTTCCTAATCTACCGTGTGGAGTTGAAAG # Left flank : TAGAGGGATACTCTAAGGAAGAGCTTAAGGAATACCTTACGGAGTGCCTGAGTAACTCCTTAGGGGAAAGGGAACTTCTTTCTTTGGATATTTTCAAAAGATTTTTGGAAATAAAGGCGCTTTTGGTATAATTTTTAATAGGTCTGTGGGTCCAAAAGGGGACCCATGTTAAATTGGCAACTGAATATGGTGTGGTTTCCTTAAGGGGGTATTTCTCTAATTCTTTTAGTGATGGACTTCGGAGGGCAATAAAATTGTGGCTTTTACCACTTTCTTCTTTTTGCGTTTCATAGCTTTAAAATTGATGCCTTTATGCAAAAACATAAAGTCATAATTATGCACGATTGCTTAAAGCATTGGGAGACAAGGACTTAAATTTGACAATAACACACTCAACTTTGCACGACCTCGGATTTTCGGAAAATAACCTTCATTTGCGAGGGGTACCCCCTTGACAAAATTATTGATTTGTCTTATTTTGATTAAAGTGGTCAGTTGGG # Right flank : TCGGATATACTTGAAAAATCTATTGGTTGGTTTATACTTCTTAATTAATGGCTATCAAGTTATTGATAATAACATCACTTCTTTTCATACTATCGTGTGCAGGAAGGATAGAAGTAAATACCAAACCCCAAACCTATAGGCCACCTGGTCTGATAATAGCTTCAGAAAAAGCGGTAGAAAATGGAAAGAAACACCTCAGAAAGGGTAATTGTGGAAAAGCTATTCAAGAGTTTAACAAAGCCCTTGCTAAAAATCCTAACAACTTTGAAGCCCTATATTGGCTAGGCGTAGCAGAAGGTATGTGTGGTTATTACTCTGACGCATATAACAGACTTACTATTGCGTTAAGATACGCTCCAGACGGAACTTGGGAAGCTAGAGTAAATGCAAGCATAGGCCTTATTTTGATATTTATGGAAAAAGATGAAGAAGCAAAAATTTATTTTGATAGAGCCAAACGTATAGATCCAAGAAATGAGTTGGTAATAAAATACTCTGAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTAATCTACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 357534-357234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIE01000002.1 Thermocrinis sp. GBS K217DRAFT_scaffold00001.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 357533 30 100.0 38 .............................. GAATGGCTTTTTACTATGGAGCAGGCGTCTCGGGTGAT 357465 30 100.0 36 .............................. ACATTGTCTATCTCATCTAAAGTCGTTTTTATACCT 357399 30 100.0 38 .............................. CTCTAAATCCATCGGAATTCCATTGCTTATGCAATATC 357331 30 96.7 38 .............................A AGCTCTGTAAGTCTTGTCGTTATCGGTATTTCACCTAA 357263 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 98.7 38 GTTCTAAGCCCACTGTGTGGGATGGAGACT # Left flank : TTACTTTGCTGTTTTGTTGCTACTAAGAGAGAGATTACTAATTTTAGCTTTGGCTTATAGCAACCGCCTGACAAAAAGACTTTTGAACCCTTGAAAATATCTCCAACCTTTTTCTTGCTTGCCACACCAAAAGCACAAATGTGTGTTATAATTGGTAAAAGTTTCTGAGGGCTTTTGAATAGCCCTTGTCAAATTGGCAACTGAATAGGGATAGTTTTTCCTTTTGTTTTGTCTCAATTTAAGATAAGCTAATACTCCGTTTCTCAAGCTTCTGATAGATACCAGTCATCACAAAAACATAAAGTCATAATTATGTAATTGCACAAAGTCATAATTATGCACGATTGTTTAAAGCATTGGGAGACAAGGACTTAAATTTGACAATAACACACTCAACTTTGCACAACCTCGGATTTTCGGAAAATAACCTTCATTTGCGAGGGGGACCCCCTTGACAAAATTATTGATTTACCTTATTTTGATTAAGGTGGTTAGTTGGG # Right flank : TGCTTGTTCCCTCTGAAAAAACCGCCCTCCCTGATGCAGGTGGAATGGAAAGCTTTTTTAAGTTTTATCTCTTTTTCAAAACTTTTTGCTTGGCTCAGTATAGTTGAAACTTCTCAGCTCAAACTCAAAAAACCACGTTAGCGAACTCTTGGAAAACTTGCTTGGTATTGCTACTGAGAAAGAATCTATTTATTTTGGCTTTGGGCTTTGGCAAGGGCTTGATTAAAAAGCTTTTGGATCCTTGAACATCTCCTACTTGCCTCGTTTTTGTGGATTACACCCTTAGAAGCTGTGTGTTGAATTATGGATATGACCTTTGGCAAATACTCCTTAGCTTCCTCTATTTTACCTTCGGCTATCAGTTTCTTAAAGTTCCTTATATAGGTCTTCATACGGGAAAGGTGGTATCTGTTTCTTATTCTCCTCTTTGCGTCCCTTCTCATACGCTTTTCAGCTTGCTTAGTGTTTGGCATGCGCAACCTCCTAAAATAATATTATAA # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAAGCCCACTGTGTGGGATGGAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 66-1087 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIE01000003.1 Thermocrinis sp. GBS K217DRAFT_scaffold00002.2_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 66 29 100.0 38 ............................. TCGTGTTAAAACCGCGGAAAAAAGAAGCCATAAGAGAC 133 29 100.0 39 ............................. TAGTTAATTTTGCTGTTAAATACATTCCAAAACCGATTA 201 29 100.0 38 ............................. GTGGGATTGGACATCTGACGGGTCAAGGTCTATGAACT 268 29 100.0 38 ............................. CCAATATTGAGGCGTTCTCTATGTCTCTATAGCACACC 335 29 100.0 37 ............................. AATGCTAATTATAGTGAAATGCTTGTATGCTTGTGTT 401 29 96.6 37 ...................A......... ATCACTTGTGAGAGATCATAGATAAGACAACACAGCC 467 29 100.0 39 ............................. AACGAAGTTGAAAAAAGAATAAAAAAACTTGTTAAAAAG 535 29 100.0 36 ............................. GAAAAAGTTTCTTTAGTTCCATGGCTCCTACCTCCT 600 29 100.0 87 ............................. AATTCATAATTNNNNNNNNNNCCTAATCTACCGTGTGGAGTTGAAAGTGCTGTATATACGTCTCAAGCATAGAAATTTCTTTAGCTA 716 29 100.0 39 ............................. CAAAACTTGAATATGGATTTAGCATTTTTAGAACTTCAT 784 29 100.0 38 ............................. ACATGAGATTTCTCCGCTTTTAATTTCAACTTTCTCTT 851 29 100.0 43 ............................. AATTCATAATTACCCGGATCTACAACTTTCAATTCGTTTTCAA 923 29 100.0 40 ............................. CTATCTTCTCACCTTTGTAGTAAGAATATTCGTTCTTGAG 992 29 100.0 38 ............................. AGCTTGAAAGCATGTTAAGACAGTTAAATCGGTTAAAT 1059 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================================================= ================== 15 29 99.8 42 GTTCCTAATCTACCGTGTGGAGTTGAAAG # Left flank : TGCGAGGGGTACCCCCTTGACAAAATTATTGATTTGTCTTATTTTGATTAAAGTGGTCAGTTGGGG # Right flank : GTCGCTATGTATATATTCAGTCAAAAATCAAAAAAGCAAGTGTCAGATTTTGTAAAAAGAGGGGGTTTATATAAGTATGAAGGAGGTATTAAAGGATGTTAGAGTTTATCTCTGGAATCGCTGTGATGATTGCGATCTCTAAAGGTGAATTTTGGATTGGAGCTGTTACGGGATTTGTGGGAACAGCAATACTCTATAAAATTGCAGATAAGGTAATTACAAGGGGGCGTTAAAAATGTTGGAATTCGTCGGAGGGATGGTTGCAACTGCTTTAGTTACTAGGAGTGTATTTTATCTGGGGGTCGCTGTAGGAGTTTCCGCATTTGTGGTATTCTCTAAAGGGAAAACAGTCTATAAACTCATATCTAAATCTAAAAGCAAAAACAAAAACAAAAGGGAGAGTTAAAAATGGCTTATGTTTTTGTCTATGGGACCCTTCGCAATGGTGAGGTAAGACACGGGGTTTTACAAAACTGCGAATTTGTGGGACTGGCTTATGC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTAATCTACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 8921-9298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIE01000003.1 Thermocrinis sp. GBS K217DRAFT_scaffold00002.2_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 8921 29 96.6 41 .............C............... TTAACCTTAATAGGCTCCTTGCTTGTATCTTCATACCAACT 8991 29 100.0 40 ............................. GTAAAGCTATCATACAAACCAAACGCCACACCAACCATAA 9060 29 100.0 46 ............................. TTTAAATTATGTTCTTTAGCAATTCTCTCCAATTCTTCATATTTAA 9135 29 93.1 36 .G...........C............... ACCTCGGCCTTAATCTTCTCGGGAGCGCGAACTTGT T [9140] 9201 29 96.6 40 ...............C............. AGGGTTTTGGAAAGGATAAAGCGAGTTGCCTCATCCTCGT 9270 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ============================================== ================== 6 29 97.2 41 GTTTCAAGCCCACTGTGTGGGATGGAGAC # Left flank : TAGTCCCTTTGGGGAAGCTTGAGGGTCCTTTTGAGACCCTTGCCAAATTGACAACTGAATAGGCTTTGGGATCTCCTAAGGGAGGTGCTCCTCTGCCTTTACAACTCCACCATATTTTTCTCTGTATTCTTCCAACTCCTTTAGCTTTTGAACTATTAGCTCTCCCATAGATACTTTCTTTTTTATGGCTTCTATGCGTAAAGCTTGATGAACTTCGGGTGGTAATAAAATTGTTGTTCTTACCGCTTTCTTCCTCTTGCGTCTCATAGCTTTTAAATTTATGCTTTTATGCAAAAACATAAAGTCATAATTATGTAATTGCACAAAGTCATAATTATGCACGATTGCTTAAAGCGTTGGGAGACAAGGACTTAAATTTGACAATAACACACTCAACTTTGCACGACCTCGGATTTTCGGAAAATAACCTTCATTTGCGAGGGGGACCCCCTTGACAAAATTATTGATTTACCTTATTTTGATTAAGGTGGTAAGTTGGG # Right flank : AAAGCTTTTAAGAGAAAGCCTTTAGGTTAATGAGCAAAAAAATACTGAATTAGAATATTATCTGTATGCCTGTTTTGGTTGAACTTAGCTTTAGGTTAAAGAAAACCCCAGAGGTCTTATATCCTACGGATGTTCATGGACTGTTTTTTAGCCTTTTTGAGGAAAGCATAGCACAAAGACTGCACAAAGAAGCCAAAAAGCCCTTCAGCATAAAAGGTTTTTCCGTGAAAGATTCCACTCTTAGGCTTGAGCTTGCCCTTTTGGAGGACGGTCTTTATCCTGCTCTCATTCACAGCTACTACTTTCCCAAAGAGGGCTTACACATAAGGGGTATTCCCCTTAGTCCCACAAAGGATAAAGGCTTAAAAGAAAAGAAAGCTCTTAGCTATCAGGAGCTTTTGGAAACATTGCCCCACAAAAGGCTCCAAATGGAATTTGTTAGTCCCACTGCCTTTAACAGGTTTAAGTTTGACTATCCATTCCCCGAGCCTCACCTTATT # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAGCCCACTGTGTGGGATGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 143623-143913 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIE01000005.1 Thermocrinis sp. GBS K217DRAFT_scaffold00004.4_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 143623 24 100.0 42 ........................ TTTTGAGCATATACCAGATGCTTCATAAGCTAACAACCTTTC 143689 24 100.0 44 ........................ CGACAAGCAATCTGCTTATGCTATTTGCTCTGTTTCAACCTTTC 143757 24 100.0 42 ........................ AATAGGTAAGTATAAGCTAATATGCCCACAATACGTACTTTC 143823 24 100.0 43 ........................ CAGCTCTTTTAGTCAGACTAACACAGAAGGATTTAAGCCTTTC 143890 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 5 24 100.0 43 AACTCCACACGGTAGATTAGGAAC # Left flank : TTTTACCACCTTTACTGCATTGGCTGATGTAACGCACACATCAGAAACCGCCTTGACCTCTGCGGTAGTATTTACATAAGCGACCACTTCTGCATCCGGGTGTTCCTCTTTTAACTTCAGCACCTGCTTTGCGGTTATCATATCCGCCATAGGACAGCCAGACTCGGGATTGGGATGTAGCACTTTTTTGGTAGGGTTTAGGATTTTGGCAGTTTCGCACATAAACCTAACACCGCAAAAGAGAATAATATCTGCATCTGTCTGGCTTGCCTTCCTTGAAAGCTCCAAAGAGTCTCCCACAAAGTCCGCTATGTCTTGCACCTCAGGCCTTTGGTAGTAGTGGGAGAGTATCACTGCATTTTTCTGCTTTGCCAAAGCTCTGATTTCCTCTTGAAGCTCCTTTATCTGCTTATTGTTTAAGCTCTCTTCCTTTGCAAGTTCAAAGGTAATCATAAAGATAAAGTTAAACTTTCATACGTATTTTGTCAGATTTAACTTTA # Right flank : CCCAACTGACCACCTTAATTAAAATAAGACAAATCAATAATTTTGTCAAGGGGGTACCCCTCGCAAATGAAGGTTATTTTCCGAAAATGCCAGGTTGTGCAAAGTTGAGTGTGTTATTGTCAAATTTAAGTCCTTGTCTCCCAATGCTTTAAGCAATCGTGCATAATTATGACTTTGTGCAATTACATAAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTCCACACGGTAGATTAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 4273-4778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIE01000004.1 Thermocrinis sp. GBS K217DRAFT_scaffold00003.3_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 4273 29 100.0 37 ............................. AACTCACGCTCTATTCTTGTTATCGTCGTTTCCGAGA 4339 29 100.0 39 ............................. GCTTCTCTACCGACAATATCCTCAAACCTAAAAGACTGT 4407 29 96.6 39 ..............A.............. TGGCACTACCTCCTTTTATTGGATTTTTTGTTTCTTTGT 4475 29 96.6 36 .............C............... ACTTGCTTTGCTGGGATTTTGCCCAGCGGAGAATGA 4540 29 100.0 40 ............................. ATCATGCACCCACACTTCTTCAAATGGGGTTTCAATCACT 4609 29 96.6 38 .............C............... ATATCTGGTCTTAGTTTATGGATTACGTAATCGTTATA 4676 29 100.0 43 ............................. TTCCAGCCAGTTTCCTTCAAAGACTATTGTCTTTACCTCTGTA 4748 29 89.7 0 ...............C...........CT | AA [4771] ========== ====== ====== ====== ============================= =========================================== ================== 8 29 97.4 39 GTTCTAAGCCCACTGTGTGGGATGGAGAC # Left flank : GTTGAGAGGGGACGATATACCAGCAAGCAAAGTAAAAGGCAGAAGAAAAACCTTTGTAGTTTTTCAGCCATAAAAGTTCTTCGCATTTTGCCCTGCGTTGTGTTATAATTTCTAATAAGTCTGTGGGTCCAAAAGGGGACCCATGTCAAATTGGCAACTGAATATGGTGTGGTTTCCTTAAAGGGTATTCCTCTAATTCTTTTAGTGATGGGCTTCGGAGGGCAATAAAATTGTGGTTTTTACTACTTTCTTCTTCTTGCGTCTCATAACTTTTAAATTTATGCCTTTATGCAAAAACATAAAGTCATAATTATGTAATTGCACAAAGTCATAATTATGCACGATTGTTTAAAGCATTGGGAGACAAGGACTTAAATTTGACAATAACACACTCAACTTTGCACAACCTCGGATTTTCGGAAAATAACCTTCATTTGCGAGGGGTACCCCCTTGATAAAATTATTGATTTGTCTTATTTTGATTAAGGTGGTAAGTTGGG # Right flank : TTACCTTTGTTTGGCAATTTGACAGCAACGTGAATTTGAAAGATGGAAAACGGATTCATAGCTTACCTTCTGATAGTGATTGCTCTCTTTTTGTTTTTTGGCTTAGCACTTTTGGTTTTAGCATACTTTCTAAATCTCATCTCTGAAGCCTTTCTTCTCGTCGCCTCTTTTATAAAGCTCGCAAAGCTTTTTAGACCAAAAAAATTTCTGAATTCCCAATGAACTGTGTGGAGTTGAAATAAAGACTGTGATAAGCTTGTTTGCCTGTGGAGTTGAAAATGAAAAAACTCCTTTCCTTTGCACTCTTTGACTCCGGAGAGACTATTCTTGGAGCGCTAATTTTTTCCACCTTTTATCCCCTTTACATAACTCAGCACATAGACCCCAAGCTTTACTCTTTCTTATACGGCCTTGCTTTCTTTTTTTCCTTTTTTATAGCCTTGCCTTTGGCAAAGGTGGCAGACAGCAAAGCCTTCAGAAAGCAATTTTTCACACTCTTT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAAGCCCACTGTGTGGGATGGAGAC # Alternate repeat : GTTCTAAGCCCACCGTGTGGGATGGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 50072-50499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIE01000004.1 Thermocrinis sp. GBS K217DRAFT_scaffold00003.3_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 50072 29 100.0 37 ............................. CGCCCCATTAGAGTTGAATATAATGCACGCTTTTCCA 50138 29 100.0 35 ............................. TTTCTTTACATTACCTTCTCTTCTGCTCACTAAAG 50202 29 100.0 37 ............................. TGTTTTGACGAATTGGGAGTTTTTGAAAACATACCGT 50268 29 100.0 40 ............................. TACAAAGCCGAAGCCACCTTTAGTCTTGTAGTCTTACCTG 50337 29 100.0 39 ............................. GCCTTTAGAACTTTTTTTACAACTCATTAAGTTTTATTA 50405 29 96.6 37 ............................T AGCGAACTGAGGAGTTCAAGCAAGTTGAAGTTGTTAA 50471 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 7 29 99.5 38 GTTCCTAATCTACCGTGTGGAGTTGAAAG # Left flank : ATACGCTGGGTGAGAAATTAAGAAAAAGGCAAGTTTTCTTGTCAGAAAGCCCTTTGGAGGGCAGGGATTTTTAATATCCCTAAACCCCACCAAAGAAGGTTTTCAATTACATCAGCAGGTGGTTGCTTAAAAACTTGGGAGTATGTTATAATCCTCTATGAATTCTGAGGGCTTTTGAATAGCCCTTGTCAAATTGGCAAGTGAATAGGGATAGTCTTTCCTTTTGTTTTGTCTCAATTTGAGATAAGCTAAGACTTTGTTTCTCAGGCTTCTGAGAGACATCAGTCATCACAAAAACATAAAGTCATAATTATGTAATTGCACAAAGTCATAATTATGCACGATTGCTTAAAGCATTGGGAGACAAAGACTTAAATTTGACAATAACACACTCAACTTTGCACGACCTCGGATTTTCGGAAAATAACCTTCATTTGCGAGGGGTACCCCCTTGACAAAATTATTGATTTGTCTTATTTTAATTAAGGTGGTAAGTTGGG # Right flank : GGCTCTCATGTTTTTCAGCTTGTCAGTTGAGTATATGAATGGTTTGGTTTTTATGTGCTTATAGAGAATTGATGAGGATTTTAGATGAACCTGCCTTTTTCACCAAATCTGACACTTACGGATTTTGTGAAACATAAACCTATGTGCTTAGGTAATTTCTCATTTACCGCTTGGATGACTATAATACTAATGTAGTGTTTTCAAACAAGCATCAGATTAGCCTAAAGCTTCCAAAGGAGTATTGGAACTCGGCGTTGGACCTTCTTTTGTCCAAGGGTTTTTACAAAAGAGATGTAGCTAATGCTTTTTTATCACTCACCGATGGAAACAACTTCATAAACTTTTACTCTTCTGGTGTTCTTCTTATCCAAGGTAAAGATGCGCAGATTTTAAAAGAAGAGATTTTGAAGTTGGTAAAGCTGGAGCGTGTGGTTGTTGGATGTGATGAGGCAGGAAAAGGAGATGTTTTTGGTCCATTGGTGCTGTGCTGTTGCATCTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTAATCTACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //