Array 1 750-1503 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRF01000185.1 Thiocystis violacea strain DSM 208 scaffold0186, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 750 37 100.0 36 ..................................... TTCTCGGCTCGACTCTACGGCAGCCGCTCGCGCAAG 823 37 100.0 36 ..................................... TTCTCGGCTCGACTCTACGGCAGCCGCTCGCGCAAG 896 37 100.0 35 ..................................... CGTGGTAACAGGCTTAGCCATCGTCGCCCACGAAC 968 37 100.0 34 ..................................... CATCAGCAGATCCTGGTCGTCCACCAGCCCCTTG 1039 37 100.0 34 ..................................... GGTATCACAGCCCTCATTGGTCACCGTGATGGGG 1110 37 100.0 34 ..................................... TTGCAACTTCGCGGCGATCGCCTCGCGGATCTTG 1181 37 100.0 34 ..................................... ACTCCTGCCATAGCACCTACTCCTCTTTCGCGGT 1252 37 100.0 35 ..................................... ACCCACGGCGAAAATCCGCCGCTTCCGCGAGCCAT 1324 37 100.0 35 ..................................... TCTCGAACTGGCGCAAGGAGGCTGATGCCGCCTAT 1396 37 100.0 34 ..................................... CCGCCAAGCTCGCGGCCTTGCTCGACAACGTCGG 1467 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 100.0 35 GCATCGCCCGGCTAATCAGCCGGGCGCGGATTGAAAC # Left flank : GAACCAACACCATGCACCAAGGATCACCCAATGCTGATCATCGCCACCTACGATGTCTCCACGGAAACCCCCGAAGGCCGCCGACGTCTGCGCCGCGTCGCCAAGGTCTGCGAGCGCGTCGGCCAGCGGGTACAGAAATCCGTGTTCGAGTGCGAGATCGACCAGATGCAATTCGAGGCGCTGGAGCGCGAACTTCTAGCCGAGATCGACCTGGAGAAAGACAACCTGCGCTTCTACCGCATCACCGAGCCGCGCGGGCTCCGCGTCAAACAGCATGGTGTCTTCCGCTCCATCGATTTCGACGGCCCCCTGCTGGTATGACGCGCGAACTCCGAGTGACGGCGAAATCCCGGGAGGTTCGCGCCGCATCTAAGTCGCTGATTCCTATCGATAGCGATTGGCAACCGCCGCCGATCCCACACCACTCCAGTTGCGTCCGCCGACCGGTTCGCGCAACATCGCCTTGCTACGTCGCTGAATCAAGAGGTTACAGCGGCGGA # Right flank : TGTAGGGGCGCCCGCCGCCGACATAGATGTCCTTGCATCGCCCGGCTATAGCCATTTAATATGGTATCCAGACGCGCTTATTAAGCGGCATATTGGGTTTCCGGAAGGTGAAAAAACGATATTATGCGTTCTGCGCGACCCTTCAAAGACTTTAAAGCGGAATACAGACGACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCGGCTAATCAGCCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.30,-17.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 1 201-523 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRF01000216.1 Thiocystis violacea strain DSM 208 scaffold0218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 201 36 86.5 34 TA....-GT............................ TCATCGATCAGGCTCAGCACCTCGACCACATAGA A,TA [203,212] 274 37 100.0 34 ..................................... GACACGAGAGAGGCGATCAAGACAGTGAGCGGAC 345 37 100.0 34 ..................................... TTCGTAAAGGCCAACGACGATGTCGAAGCCGGAG 416 37 100.0 34 ..................................... ACTGGCGCATTGATCTCAAGAACCCATCTCCGCC 487 37 94.6 0 ......................A..A........... | ========== ====== ====== ====== ===================================== ================================== ================== 5 37 96.2 34 GCATCGCCCGGCTAATCAGCCGGGCGCGGATTGAAAC # Left flank : CTTGATGACGTCTTCTGGACTGTAATGATTTTCTTCAACCGCATGAACGGCAATTTTTCGAATATAACTCATCACCTCGTCAGGGATTAGACGTGCATCGGATAACCAGTTGGGTTTCATGATAGGCCTCATCATTTAACTATCGTATAATGACTTAGACGCCTCATTGTGATTTTTGTTCCAGTAAATGCCTGGATTATT # Right flank : CTGGCACATCAGGCGGCGTTGCGCGTCTTGAGCAGTGACTCCAGCTTGAATTCCGCACCGAGGTGCAGATCCCCCGGGGCGATGCCCGCGACCTCGCACTGTGACAGCAGGGTCGACAGCGCCTCGTAATAGCCCATCAGCCGCCCCTGCTCATACTCCGATCCACCGCTCACGGCTTCGGCAGAGTCCTTCAGGGACTGCGCGACCTCTTCCAGGACGACCAGCGCATCTTGTTGCTTGCTCATCGTTTCCGCTCCGCTAGGATTCTCTCTAGGATTTCAATTTGCTGCGTAAAGTTGGCGATCTCTTTCGGCCAGTACGAGTTGACCAAGCCATTTAGGTGTTGCGGCGTAATTCCTGGCGCGACCCAGTTCGACGGGTTGGTGATCTTGTCGCGGTGCGTCTCGACCTGGCTTCGCAGCGAACGAATCGAGCGCGCCAGCTCCCCGTCAGACTTGGCGGCCTGGTCTTTCAGGAACCCGGCATGCCGGCCGCCAGAT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCGGCTAATCAGCCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.30,-17.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 32329-29799 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRF01000044.1 Thiocystis violacea strain DSM 208 scaffold0044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32328 29 100.0 32 ............................. CACCACCAGGCGCCCGACAGGGGCGATGCTCC 32267 29 100.0 32 ............................. CAGCCAAGCCTACGCAAATAATGCCATTACTG 32206 29 100.0 32 ............................. CATGATCCAAGGCATCCAAGCCAACATCTCAG 32145 29 100.0 32 ............................. GCAGACGGCGCATGGAGGCAGAAGCGCGGCGC 32084 29 100.0 32 ............................. CGGCCATTTCGCAGCGCTCCTTCACGCCGCGC 32023 29 100.0 32 ............................. GCCATCAGCACACCAGCGACCCATTCATTGAG 31962 29 100.0 32 ............................. CTGTAAGCGTTTTTGCGGTAATTGTCCTGGAT 31901 29 100.0 32 ............................. GATCAAATCCAGGCGCTTGGACTCGGCGGTTT 31840 29 100.0 32 ............................. TGACGAGAGAAGCCTGAATTTGGGTCGTAGAA 31779 29 100.0 32 ............................. TGTCAAGGATTTAGGTTGTCGGCCGTGTTCGC 31718 29 100.0 32 ............................. CACGGATTGTCCGAGTAATTGATCTCGCACAG 31657 29 100.0 32 ............................. GCCGAAATTTACCGGAGATGGCACGCCGACCC 31596 29 100.0 32 ............................. ACAGCCCGAACGTCGTCGCTGGAATGCCGAAC 31535 29 100.0 32 ............................. TCATTCCCGATGACCATGGCGGTCAAGCGAAT 31474 29 100.0 32 ............................. CCATCGGATGACTTTTGCGCCTCCAGCTTGCG 31413 29 100.0 32 ............................. GATCGCCTCGGATGCTGCGCTCCAGGGCGAGA 31352 29 100.0 32 ............................. AGGCCAGGTTGGTGAACGACATCGGGCACGCC 31291 29 100.0 32 ............................. AATCCTTAGTATCCATAAACCCACCATGCATT 31230 29 100.0 32 ............................. TCTACGGGGCCAAGGTATGAACGCGCCACTGG 31169 29 100.0 32 ............................. CCATGGACAAGCTGGGGCGGGTCTCTGATCAG 31108 29 100.0 32 ............................. AAATCGGCGTGTCGGACGACCGCGCGAGTCAT 31047 29 100.0 32 ............................. CACGGCGCCACGGTGCGCGCCATCGCGGTCGA 30986 29 100.0 32 ............................. TGGTCGAGGTCATGGATCGCCCGTCGATCACC 30925 29 100.0 32 ............................. ATTGACTACCTCCACGGCCCCGTCACGTCGAC 30864 29 100.0 32 ............................. CGCTGGGGCCTGACCTGCTGCAGCCCCGAGTG 30803 29 100.0 32 ............................. CACCGCGCCCACTGCCGATGCCGTCGTCCCAC 30742 29 100.0 32 ............................. GCCCAATTCGTCGCGATCGTCGACCATCACCT 30681 29 100.0 32 ............................. GCTAGCAATCGCGGATGGCAAGCAGGCGGGGC 30620 29 100.0 32 ............................. AAAGTCGCAAGCCGCTCCGCCTCTGCTCTCGC 30559 29 100.0 32 ............................. CTGATACCAGAGGTGGTACCGCTTGAGGTTCA 30498 29 100.0 32 ............................. GTCCCGGCCGTCAGATTCTCGGATGCGATGAT 30437 29 100.0 32 ............................. AAAGGCGGCGCTCCGCATGACCTTGAAGTCGT 30376 29 100.0 32 ............................. GCCACGTCCTCGAGTGCATCCAGGGTGAGCTT 30315 29 100.0 32 ............................. CCGTGCGACTGCACCAACTCATTGGCCGCCGT 30254 29 100.0 32 ............................. GATATCGAGGTATGCCCACCGCTTCCTCCAGC 30193 29 100.0 32 ............................. GTGACCAACCTGATCTAAGCGAGACGAGCGCC 30132 29 100.0 32 ............................. TGCTCGCACACATGCTCGGAGTGTTTGATGGA 30071 29 100.0 32 ............................. TTACGCACGACCACGACGCCCATCTGATCGAG 30010 29 100.0 32 ............................. TGCAGGACCAGGCTCGGGCGCAGACCTCGGCG 29949 29 100.0 32 ............................. GCCGGAGCATCGCCCACCCCCGCCTGCCCAGC 29888 29 100.0 32 ............................. CGTTCACGCTAGCGACGCTAGACGGTTTTAGC 29827 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 100.0 32 GGTTCCCCCGCGCTCGCGGGGATAGGCCC # Left flank : CGCGAAGAAGGCCGAGACGGACAGCAAGACGGTCGATCGCTTGGTCAGGCGCGAAGCGGCGACCGTGTTTCGCAAGCAGGATGTAATCCCCTCGATGATCGATCGCATCAAGCAAGTCATCCGCATGGAGGAGACCGATGCCTCTGGTCATGATCGTAACGCGTGATGTCGCCGACCGATACCGTGGATATCTCGGTTCGCTCATGCTGGAGGTTGCTCCAACGGTCTACATCTCACCGCGCATGAATCCGGGTGTGCGCTCTCGCACCTGGGGGGTCTTGACGGCTTGGCACACAGCGGAGCCGACAGGAAGCATCGTGATGGTGTGGCGGGATGTGAATGCAACAGGGGGTATTGGTATCGCGACGCTGGGGACGCCGCCGAGAGAACTGGTCGATATCGACGGACTGTGGCTGGTGCGAAAGTCTTTGTAAAAGCGCTCTTTGAAAACTAATGTATCTCCCGTTTTTCTCTTGTAGGGTATGCGCTTAACTGCAAGA # Right flank : ACGCTCAAGGCTGACAGCGGCGAGCCACCGACCGCTGCCGATCCGCCATTCCACTGCGGAGCGATGCTTGCAGCAGCGGCCCCGTGCCGAGGTTGATCATGATGGTGGTCTGACGCGGGGTAACAGGCTCGCACTAGAGCGCATCCGCCCGCGCGCGCTGCTACCCAACCTCGCAGCCACGCTGACGCCGCGCGCGCGGGCGGTCGAGACCCCGCCGTCAGGCGGGGGCGAGTCGCGCGCGTGGAAGCTGGGTGCCACTGCGCTTGAGTCGGGCGGCGAGGGTCGATTCAGGCGCGGTGCTCGCTCTTCATCGAGCGCGCAAGCAATGCCAGCGCTTGCCGGCGTCCGCTTGAACGCAGTTAAGCGGCGCCTGTCACTGGTCTGTCAGCCGGAGGGCGGTGGGCGGGCATATGAATCGGTCGTGACCGGCGCCCGCCTTGCCAGCGCCTGCCGGGGCCGCTACCCCAGAATCGAGGACAAGGCGCCGGTGGGTGCTGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGCTCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 42110-43620 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRF01000044.1 Thiocystis violacea strain DSM 208 scaffold0044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 42110 37 100.0 33 ..................................... TGAGCTGATGCCTCACAGTCAAACACCTTGCAT 42180 37 100.0 34 ..................................... ACGATAGCTTAGACTTACTTGACTCTCTCTCTCA 42251 37 100.0 35 ..................................... ATCTAAGTCAGAAGCGTATGCGCAGTTAAGTGGAT 42323 37 100.0 33 ..................................... TTCCGCCTGTGTCTGTGGTTGCTCCCGCATCCA 42393 37 100.0 32 ..................................... TTGTTCTGTTGCGCTGAGACTGGTCTATCGAT 42462 37 100.0 34 ..................................... CTGCGTAGAACATTGGTTTCTCCTGTTGGCTGGT 42533 37 100.0 33 ..................................... CCTGTTGTGATGTACCCCGTGAAGGCGTCTACC 42603 37 100.0 32 ..................................... TTCCAACGCCGGGATTTCCGTGAATGACAGTA 42672 37 100.0 33 ..................................... GAGATGTTGCGAGATATCATGCCGATCATGTAA 42742 37 100.0 34 ..................................... TACCCGCGATCTTCGGAGTCGTAATGCTCAATAT 42813 37 100.0 32 ..................................... CGCATTTCGCGAAGCTCCGATGCGATGCGGGA 42882 37 100.0 34 ..................................... ACATGGTTCCGGTGTCATTCCGTATCGATTATTA 42953 37 100.0 33 ..................................... ATTCGTGCCTCCGCGGTTTTGTCGCTTGCGGAA 43023 37 100.0 33 ..................................... CGTCGGCATAGCGGGCTTCGTCGATGGATGCGT 43093 37 100.0 33 ..................................... CACCACTCGTGTTGCAACGGTCTCTGGCCCCAT 43163 37 100.0 32 ..................................... ATGTTACGCGGCGAGCTTCATGGTCTCGGGGG 43232 37 100.0 32 ..................................... CCATGTGGCGCTCTTCGTTGGCGATCAGCTTG 43301 37 100.0 33 ..................................... CACCACTCGTGTTGCAACGGTCTCTGGCCCCAT 43371 37 100.0 35 ..................................... TCTGTTAGGGAATTGAGTATACGTATTTATACCGC 43443 37 100.0 34 ..................................... GGCTAGGCGAGTAGGGCAGCGTAGAGGTAGCGGC 43514 37 100.0 33 ..................................... CATGATGTCTCTCCGATACGGAATGAATTGAAT 43584 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 22 37 100.0 33 GTTCGAATCAGAGACCCGTTCTAAAGGGGATTGAGAC # Left flank : CCGCCGAGCTGACCAAGCGGATCGGGGAGCGCCTCCGCGAGACGCGGAAGCTTCTAGGTTGGTCTCTCAGCGATCTGTCCGCCCGCACCGGCGGGGTATTGAAGAAGTCTCGACTGAGCAACTACGAGCAGGGCTTGCGCCGGCCGGGTATCGAGGAGGTATTCCTGCTGGCCAAGGTCTTCGGCATGGTTTCGCCGACCTGGGTGCTCTGCCTGGATGAGTCGACTGGTCCTCTAAACGCGCCCGAGATCGACCTTCTGGCCCGGTATCGCGCCGCCGATGCCCGGGGCCGGGATCTGATCCAGAGTGCTGCGGAGATTGCGACCGATGTGCAGCTCGACACTAGCCGAAGGGTCGTTCCCTAGAGACGCACCGGCCTGCTATAGTTGAGGAGGATTCGACGCTCGCACGGCACGCTGCACATGAACTTTTCGGCTCCGCGAAATCCTGGGAACCCACCTCGCAAGTCGTTGATTAAAAAGCTTCTCCGGCAACGAGCA # Right flank : CATTCAGGGCAGCTAGTGGTCTAGAGTGAAAGTCCTAATACTGTTTCTGGGCGATCGATGGCATCCTACTCATCTGTCTTGAGTTTCGCCGATGAGTTGATGACACGATGCCACGCTGCACCCCGATTCCCGTTTCCCTCACCGACAAAGAACGTACCCAGTTGGAGGCGTTGGTGCGTCAGCACACCACGGCGCAGCAACTGGCGATCCGAGCCCGAATCATTCTCGCCGCCGACGCCGGCAAGGGGATGCACGAAACGGCCGCCACGTTGCAGGTCAGTCGCTCGTTGGTCCAACGCTGGCGCCGACGCTGGCGCGAGCGCGCGGATCAACCCGTGCTCGAGCGTCTGAGCGATGAGCCGCGTTCGGGGACGCCGCCGACCTTCACCCCCGAGCAGATCTGCGCCATCATTGCCCTGGCGTGCGAGCCTGCGGTCCGCGAGGGAGTGACGCTGGCGCGCTGGACCCATGCGGACTTGGCTGAAGAGGCCAAGGCGCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAATCAGAGACCCGTTCTAAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //