Array 1 447898-448475 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNJ01000002.1 Escherichia coli strain BX2S10 NODE_2_length_565526_cov_113.49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 447898 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 447959 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 448020 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 448081 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 448142 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 448203 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 448264 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 448325 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 448386 29 96.6 32 ............................A CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 448447 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 463977-465409 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNJ01000002.1 Escherichia coli strain BX2S10 NODE_2_length_565526_cov_113.49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 463977 29 100.0 32 ............................. GCGCGCGACTACTGCCCGACCCGCCGACAACA 464038 29 96.6 32 ............................C GACTTTGCCCGGATAAGCAATGGCGATACGTC 464099 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 464160 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 464221 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 464283 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 464344 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 464405 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 464466 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 464527 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 464588 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 464649 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 464710 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 464771 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 464832 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 464893 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 464954 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 465015 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 465076 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 465137 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 465198 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 465259 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 465320 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 465381 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //