Array 1 810-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDMP01000082.1 Pseudomonas aeruginosa strain Pae_CF67.05g CF67.05g_contig_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 809 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 749 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 689 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 629 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 569 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 509 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 449 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 389 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 328 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 268 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 208 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 148 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 88 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : | # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-328 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDMP01000075.1 Pseudomonas aeruginosa strain Pae_CF67.05g CF67.05g_contig_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 61 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 121 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 181 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 241 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 301 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : | # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10552-9203 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDMP01000075.1 Pseudomonas aeruginosa strain Pae_CF67.05g CF67.05g_contig_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10551 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 10491 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 10431 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 10371 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 10311 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 10251 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 10191 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 10131 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 10071 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 10011 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 9951 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 9891 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 9831 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 9771 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 9711 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 9651 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 9591 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 9531 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 9471 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 9411 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 9351 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 9291 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 9230 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //