Array 1 1160340-1159033 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065322.1 Akkermansia muciniphila strain YL44 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1160339 33 100.0 34 ................................. TTAATTTGCTGAGCACGACGGAGGTGACTTCTTA 1160272 33 100.0 34 ................................. ACTTCCTGGGACAGGCAGATCACGGGGATGCTCG 1160205 33 100.0 35 ................................. GATTTTTTGTGTAACAATGTAATTGTGGTCATCAT 1160137 33 100.0 34 ................................. ATCACCACACCAACTTTCTATGCCGGATTAACTC 1160070 33 100.0 34 ................................. GTTGTTGCGGTCGGCCACATCATCCCCGGCATCC 1160003 33 100.0 35 ................................. AGGGGACGGAGCGTTGTTCCACGGAGTTTCCCCTT 1159935 33 100.0 34 ................................. TTGGACAGGCTCATGTCAATAGTCCTCCATGTTG 1159868 33 100.0 34 ................................. TTGAGGGTTTGAATGTTGATTTTGGCGGGGATCC 1159801 33 100.0 34 ................................. TTCTCGGATATATCGTCTTTGATACCCGCACACA 1159734 33 100.0 34 ................................. CACGGCATTTGCCGCATAATGTAATCTTTGCACA 1159667 33 100.0 34 ................................. GGCTTGGAGCCTCCGCTTCCCATTATCGCCGATG 1159600 33 100.0 34 ................................. CCTCTCTTTTTAGGCGGAAAGGCCACGAACAGCG 1159533 33 100.0 34 ................................. TCCTACCGTATGGAGACAGTGGAATCGGAATCCG 1159466 33 100.0 34 ................................. CGTGTCCTGGTAGGTCACCGGAAGCGTGTCAAAA 1159399 33 100.0 34 ................................. CGAGTATGCCTCCACCAGCGCCCGCGAAAAGATG 1159332 33 100.0 34 ................................. TCGAATGTCCGGGACACAGCCCGCAACGGATATG 1159265 33 100.0 33 ................................. TCTTTGTTGAGCGGGTACCATGAGCCTGTGCTG 1159199 33 100.0 34 ................................. CTCGAACGTGCATCCGTAATTGGCAAGGCACCAG 1159132 33 100.0 34 ................................. CAGGTGCGGGTGCAGAAAGATACGGAGGGCGCCG 1159065 33 97.0 0 ..........................C...... | ========== ====== ====== ====== ================================= =================================== ================== 20 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAATAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTTCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : ATGACGAGTGCAAGCTTCGAGAAGATGCCTCCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTTCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCCTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGTTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATATGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1169296-1168811 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065322.1 Akkermansia muciniphila strain YL44 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 1169295 31 100.0 34 ............................... TTACAAAACTGTTTTATGGATACAAAAATATATA 1169230 31 100.0 34 ............................... CTTTACAACCCTTATAGGTTATTATTTCCCTATG 1169165 31 100.0 33 ............................... GGCATTCAGGCAGTCGGACGGTTCAACTCCGGA 1169101 31 100.0 34 ............................... GGCTAAGTGTTGAGGGTTCCCGTCAACCAGCCGG 1169036 31 100.0 34 ............................... TGGAGGGAGTGAGTATGAAAGGGAAGGATTTGAG 1168971 31 100.0 34 ............................... GACCAACAACGTACCCGGCACGTGGTGCATCGGC 1168906 31 100.0 34 ............................... CTTTTTCCGGCTCCTTTCCGCAATGCGCATCAGG 1168841 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== ================================== ================== 8 31 98.8 34 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : CGCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTTTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCTCCTCTTCTTTTGTGGAAAAGAGAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTTCCGCATCGTGCACAGGCCTTGGTTGCCGGAGATGCAGGCTTTTTAACGCATGAAAAGCTTCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTAAGGCCTGGAGTCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGCCGCCCCGG # Right flank : GTCGTAGATTGAACGGCCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //