Array 1 1821-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMEZ010000021.1 Vibrio cholerae strain Vc306 NODE_21_length_19159_cov_126.246829, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1820 28 100.0 32 ............................ TTCTGGCGTTACCGTTTCCACACCCAAGCTAG 1760 28 100.0 32 ............................ ATCAAAAAGGCTCTTTGTCGAGTCTTTCATAT 1700 28 100.0 32 ............................ GCCTTTACTACCTGACCAGGTGTTGAACTCAA 1640 28 100.0 32 ............................ TTTTTACGACATTGTGCAGGTGTGTCGAGTTC 1580 28 100.0 32 ............................ TCATAGGAGCGTTTAAAATGAACTTGCTAACT 1520 28 100.0 33 ............................ ATGAAATATATTCCTTATTGCTTTAACGGATTT 1459 28 100.0 32 ............................ GTGCAGGAATTATAGGTATGAGCTATGGCGTA 1399 28 100.0 33 ............................ CGCAAAATGCAGCAATACCTTGCTCGTGGTTCT 1338 28 100.0 33 ............................ CTTTGGCGGCAGGTCCATTTGCTGCCCCGTTCT 1277 28 100.0 32 ............................ TCGTCCATGCCGTCGTCAATGTCGGCCTGTAT 1217 28 100.0 32 ............................ ACTTAATGCGCATTAGGGCCATTATGTTACGG 1157 28 100.0 32 ............................ TGTAAAGGACGAGGCCAACCACGCAAGCAGCA 1097 28 100.0 32 ............................ ACAGACGGCCGGAACGGAAACATCCCCTGTGA 1037 28 100.0 32 ............................ CGACAAGGCAACTTACAGTTCACAGAGAGGAC 977 28 100.0 32 ............................ TTTCTTTTTGAGAGCAAAGCCACACTTTAAGT 917 28 100.0 32 ............................ CGCCCCAGAAAATCATCTGGCAGGGAGAAAGC 857 28 100.0 32 ............................ TTTTGAAATCAGAGCAGAATTATAAAGGTTAG 797 28 100.0 32 ............................ TTTCGCCGTAAGTGGCTGAACTATAGAGGGTT 737 28 100.0 32 ............................ TTAAGCACGCTTCTATTTCAGAATTGCAACGT 677 28 100.0 32 ............................ TGAATAGGGGCGAATTGTTAACGCACGAGCTA 617 28 100.0 32 ............................ ATTCGGGAACGTGTCAATCAAAGCAGTCAACC 557 28 100.0 32 ............................ ATCAGATGCTTCAATCAAGTTGTGTAGTTTGG 497 28 100.0 32 ............................ GCGTTGGCTTTACTTAGAGCTTCTTGCTGCTT 437 28 100.0 32 ............................ AATGCTGGGAAGTATGACCGATCCCACAAAGT 377 28 100.0 32 ............................ AACAAAGGGTGCCCATTTACCTATGCCTTCAT 317 28 100.0 32 ............................ TATTCAGTTTTGCAAGGTACTGATTTATCCAA 257 28 100.0 32 ............................ TTACTGAACCAGACTGGCGATTTTGGCCAGAG 197 28 100.0 32 ............................ ATCAGTATGGCGCGTTAACCGATTTCTATGAT 137 28 100.0 32 ............................ TGAATTTGAAAAGGCAATCCGTGATTACGTCA 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACCAAGCAAGCCGACAGCATTGTGCGCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCGCAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGTAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGTTTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AATACGCCCGTCGCGTTACCTTTTGACACTCCTGTTCACTGCCGCACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 439-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMEZ010000063.1 Vibrio cholerae strain Vc306 NODE_63_length_487_cov_116.078049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 438 28 100.0 32 ............................ ATACGCCCGTCGCGTTACCTTTTGACACTCCT 378 28 100.0 32 ............................ TCAATTCTCTATGTGTGCATTATGCGTGCATT 318 28 100.0 33 ............................ ATCGAAGAGCTTACTCAGCAAGGCAGCTATATT 257 28 100.0 32 ............................ TTTTGCAACCGCTCTAGATCACCAATTGAACT 197 28 100.0 32 ............................ GCACAAATAAAAGGCAATACCTCATATTCGGC 137 28 100.0 32 ............................ TTGACGAATTCTGCGTCCGTTTTAAAGTTTAT 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CACAGGCAGCTTAGAAAATACGCCCGTCGCGTTACCTTTTGACACTCC # Right flank : AGTCAATGTGGTGTGGCGTTAGCGGAAGTTATCGTTCACTGCCGCACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 40970-38902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMEZ010000016.1 Vibrio cholerae strain Vc306 NODE_16_length_41015_cov_119.285407, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40969 28 100.0 32 ............................ GTCAATGTGGTGTGGCGTTAGCGGAAGTTATC 40909 28 100.0 32 ............................ GTCCCCACCAGTAGATAAAGCAGGAGCATTTT 40849 28 100.0 32 ............................ TATCTCACCCGTTATAAGATTAATAGCCAAAC 40789 28 100.0 32 ............................ TGTCGATTTACATGAGTGCGTACTTTGGTTAC 40729 28 100.0 32 ............................ GTCGTACACCATTTCGGCACACATCAGCTCTT 40669 28 100.0 32 ............................ ACTAAGAGCATGTGGTTTACACAACCCACCGA 40609 28 100.0 32 ............................ CGATTGTTTATAACTCGCCGATCTTCGGCTTG 40549 28 100.0 32 ............................ TACAACCGTATTGAAAGCGGAATGGCTACGCT 40489 28 100.0 32 ............................ CGATTGTTTATAACTCGCCGATCTTCGGCTTG 40429 28 100.0 32 ............................ TACAACCGTATTGAAAGCGGAATGGCTACGCT 40369 28 100.0 32 ............................ ATCACCCTGCGCACCGAGCTGAAAAACAGCTT 40309 28 100.0 32 ............................ AACAGGTGACAGGGTAGCACCACAGCAGTTAT 40249 28 100.0 32 ............................ GAGCAGCAAGTAAAAGCTTTGCGAATCGTAGA 40189 28 100.0 32 ............................ TTGCTTAAAGCGTTGAGGAAGTCTCAACCGTT 40129 28 100.0 32 ............................ CGTTCTGGCGGCCTGAACGCGCCAACGCGCCA 40069 28 100.0 32 ............................ TAATTTATCAGCCTCATAAAACTCACCAATTC 40009 28 100.0 32 ............................ AGTTTGAAACCACTGATCCCGTTGAAGGTGGC 39949 28 100.0 32 ............................ ATCTGCAGATTGGGCTCAGGCTGGTCCTCTTG 39889 28 100.0 32 ............................ GCCAGTGAAACTTAATGCCACGCCGAGAAACC 39829 28 100.0 32 ............................ TGTAGTATCGGTAATTGCCCATGCCTGATTCC 39769 28 100.0 32 ............................ GTTAAAAGAAGTGTACCTTTTAAAAGGTACTA 39709 28 100.0 32 ............................ CAAAGCAATTAACGATCTTAAAGGCACAGAAC 39649 28 100.0 32 ............................ TTAGCAAGCGTCATGCCTCCAGCCATTGATAT 39589 28 100.0 32 ............................ GCTACGGCGTTACGTATCGTATCTAAGGAATT 39529 28 100.0 32 ............................ ACTGGGGTGAGGCGGCTAATCAGGCGTTAGAT 39469 28 100.0 32 ............................ ACATAAAGCCCGATGTGTGAAAGTGGCGGCTT 39409 28 100.0 32 ............................ TTTCAAGCGGTTGCTGAATTGTGGATGGACAC 39349 28 100.0 32 ............................ ACCAGTTCTGGCCATGTAGAGGTGAGTGAAGT 39289 28 100.0 32 ............................ TTTTCTGAAATCACTTATTCTTTGCTGTGGAA 39229 28 100.0 32 ............................ ATGGGTGGAGGCGAAGCCGCCACAAAATACAC 39169 28 96.4 32 ...........T................ TTTTAAGCACCACTGGCAATAAGCCGTCATTT 39109 28 96.4 32 ...........T................ TGATGAATGGCCCGATTGCCGATATCGAGTGC 39049 28 96.4 32 ...........T................ ACAAGAGCAGAGAGTGAAAACTAATCTAGGTT 38989 28 100.0 32 ............................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 38929 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 35 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCAGCTTAGAAAGTCAATGTGGTGTGGCGTTAGCGGAAGTTAT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //