Array 1 36012-37756 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNJL010000003.1 Veillonella parvula strain 1001216B_150713_F11 NODE_3_length_247407_cov_69.3852, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 36012 36 100.0 30 .................................... GAGCCGATATCATTCTTTCCAACTACTGTA 36078 36 100.0 30 .................................... TTCAGCCATATCTAATACACTACCTAACGC 36144 36 100.0 30 .................................... ACTACCTCACTATCAGAGTACCCCTTGGCA 36210 36 100.0 30 .................................... TTTATTAATGCTTTCTTTCGCAAGAAAATT 36276 36 100.0 30 .................................... TCATCCATTCACAGTCTCCTTTCTTACTAT 36342 36 100.0 30 .................................... TTGAATGCTTCCAGTTCCTCGGGGCACCAG 36408 36 100.0 30 .................................... GGCAGTACATTTATTGTGTTTGTTGTTTAA 36474 36 100.0 30 .................................... ATAAAGAAAGTTTAGGGCTGAAAGAATTTG 36540 36 100.0 30 .................................... TTTGGAATTAACTATTCTATTCGAGAAGTA 36606 36 100.0 30 .................................... ATGCTCGTAATATTAGGGGTTTATTTAATG 36672 36 100.0 30 .................................... GTAAAAGAAGACATGTACAAACAATCTAAT 36738 36 100.0 30 .................................... ACAAAATCCATTGATCACCGACTTTGCGTT 36804 36 100.0 30 .................................... AGAGCCTATAGTGCGGATTTATTCTTGATG 36870 36 100.0 30 .................................... TCCAATCTCCCGTAAATTTTACATTACTCA 36936 36 100.0 30 .................................... GTATCTGTTGATGTGAATGTAGTCAATGTA 37002 36 100.0 30 .................................... GGTAACATGCTATAGCCGACTTCCTTAGTC 37068 36 100.0 30 .................................... CTATTGCATATACTGTTATTAGTATTTGTA 37134 36 100.0 30 .................................... TATGCCAACGGTTTATTATTTTGATGAATG 37200 36 100.0 30 .................................... TGTCACCCCATTAAGAGATTCAGTGAGTGC 37266 36 100.0 30 .................................... TACCGAATATCGCTTTATCGCCACCTGGTA 37332 36 100.0 30 .................................... ACGGGCCGTGATTTAGTGACGCCTACTGAA 37398 36 100.0 30 .................................... ACCCAATCTCGCCATCCATTGATACTGAAT 37464 36 100.0 30 .................................... AAACAACTCATCAATAGGGCGTTCATGCAA 37530 36 100.0 30 .................................... TATTGACCACTATTAATCCCGCATCACCTA 37596 36 97.2 29 ...................................T TTAGCACAGAGCTAGGTAGGTGGTTTTTT 37661 35 88.9 25 ...........................-A.A..T.. CATTAAGAACGTCCATGTACACAGA 37721 35 77.8 0 .G.........T...G..CG..-...........TT | T [37746] ========== ====== ====== ====== ==================================== ============================== ================== 27 36 98.7 30 GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Left flank : TAGGTTGGGGGTTCGATTCCCTCTAGGCGCACCAGAAGGATAGAGCTGCAGTTTCGCCTTAATACTCGTGAGAATCTATTAAGGTAGGGCCTTATGCCGAAATCAAAGGACACAATTTATTGTGTCCTTTTCCTATTTTAATCATATTAAAACTATCTTTCTATCAAGATAATAGTTGAGTAATTATGGTTATTTAGTAAAAATTAAAACTGATTGATGAATAAAAATTAGAAAAGCTTGACATATAAGTAATGCTGATATATTATGTAATTAGATTTTACCATAGCGAAAGGTTACAGAATCTACTAAAATAAGACTTTATGTCGAAATCACTACTTTTAAGTAGTTATTAACAATAGTATATGTAAATTGAGTTAGTAGTACATATTACTAATGTTTTTTGTGTGAAATTTTGAGCACGGGTCTTATGATCTGTGCTCTTTTTGTTTATTGATTTATTATAGCGAAAGGCTACAAAAGTGCTTAACTTCGTTGTTGAG # Right flank : TTAGAATAATAGAAGAGAATAATTTTCTAATTATTATAATTTTATGTATTAAATAGGATTAATAATTTTTAGGGGAGGGTATATATGGGATATATACTAGGATTAGATATCGGGGTTGCTTCTGTTGGTTATGCAATAATTGATGAAAATTATAATGTCCTAATTAGTGGGGTAAGACTATTTCGTGAGGGTACGGCAGAAGAGAATGTAGCACGCAGAGGGTTCAGAAGTAGTCGTAGAAGTATGAGGCGGAGCCGTCATAGATTGGATCGACTAAAAGAACTCTTGTCGAGTGCATTAGGTGTGAGTGGAGATCAATTTTATACAAATCTCTATGAAATTAGAGTTAGAGGACTTAGTAATAAGCTTTCGCCTGATGAATTGATTGCTGCAATCATTCAATTGGCTAAACATAGAGGTATATTTTATTTAAGTCCAGAGGATCTTGCGACTGAGGACGGAAGTAACCAGAGTTCAGCAGATATTATTCGAACTAATGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 13965-12939 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNJL010000007.1 Veillonella parvula strain 1001216B_150713_F11 NODE_7_length_148936_cov_66.7993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 13964 36 100.0 30 .................................... GACTTTCGGCGTGTACTCGCCTTCGCGTGC 13898 36 100.0 30 .................................... TACTTGGCCATGAAAAACGCTGTGTGTTCC 13832 36 100.0 30 .................................... GCCGTATGCAAGGAAATGGGCATTAAGGTA 13766 36 100.0 30 .................................... GGAAAATATCCAATTCAAGGGGAACACATA 13700 36 100.0 30 .................................... GCCGTATGCAAGGAAATGGGCATTAAGGTA 13634 36 100.0 30 .................................... GCATGGAGCATATTATATCCCATGCAGCTT 13568 36 100.0 30 .................................... GGTTCATATCCTGTAGTTTTTGCCTACGTT 13502 36 100.0 30 .................................... TTTTCTAATGTACACTTGCCGTTATTATTC 13436 36 97.2 30 ..........................T......... AATCAACCGCAATGATGCTGCCTTGGTCTT 13370 36 100.0 30 .................................... AATTTTTTCAATTATTTGTTCTAATTCGTA 13304 36 100.0 30 .................................... GCTGAGGTGTCGTAGCATATGCCGGTTGTA 13238 36 100.0 30 .................................... GATCCAATGCATTAATTACCGCATTCATAT 13172 36 100.0 30 .................................... AAAACTACAGGATATGAACCGAGCTTTCTG 13106 36 100.0 30 .................................... AGGGTTACTAGGTGATTTACCTTGACGTGG 13040 36 97.2 30 ...................................T GCGATTGGGATTATGCAAAACTAGCAGAGG 12974 36 97.2 0 ...............G.................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.5 30 GTTTGAGAGTAGTGTAATTCTGTAAACCTCTAAAAC # Left flank : AACCAAATTACAAAATCAATTATCTAAAGAAGCCTTGTTGATGACAGAAGCGGTGGCAGATATTGTAAATCGTCTTCATGCTTTTTATTATTCTTTAGAATTTGGATATCCTTTATCAATCCAACATAAACTTGAAATTGGTACTGCTGAACTTATTAAGTTAGGTAGCTTTAACTTTGAGTTTAATCGTACAGGGGATATTATGGATTTCATGTCCTACATAGAAGTGGTTGATACATTATTATCTCCCATGGTATATATTATGGTAAATCTAGATTTAGTTTTAAATGATGATGAGATTAATGCATTTTATCACAACATGTTGAGTAGACAATTACGATTAGTTTGTTTAACGACAGGATCTTTTGTTAAAGAAAATCTTGATAAAAGTCTTATTAATGGGTATATTTTAGATAATGATTTTTGTGTTATTTAAGGAGTATACAGAATTACACCTGGTGGTAGCCCGAGTTACTCTTGAGCCTCAAATTTAATTTGGG # Right flank : GAGCAAATTAGATCCTTCTTTAAAGATTTGGTTTGAGAGTAATGTAATTAGAATTTAGTAGATTATAAATTTGTGAAACGACATAAAAAGCCGGGCTACCTTGTTTTAGTAGCTCGGCTTTATTTGTTAATTTATATATTTATATAATATGATGCTTATTGTATCGTATATTAGTTCGCTCTATAATAGATTTAGGATAGTTAGACGAGGTTGGGACTCTCTTCGTTTTTGAAGGGAGGGATAAGTCTATGAGTGATTATGAAGTAATCATGCTCCTGTTACAAGTAATGGCTATTGTTATTGCTTTTGGAGCCTTAATAGCACTTATTTGCCTTACAAGAAGCAAATAGCCCTCCGTTGCCTAGTGTAACTAGATAACTGAAAGGCCATTTCCTAATGTTTTACTGATTTAGAGATGAGCCTGACGGCACTACTCGTCTGACTATCTACCTATATTATAGGGATAAAGATTTATATCGTCAAATTGAGATAAACCTTAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTCTGTAAACCTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //