Array 1 437517-435462 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYES01000001.1 Moraxella catarrhalis strain 5P54B2 m5P54B2.contig.0_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 437516 28 100.0 32 ............................ GTGCAGCTTGGGGCAGTGAATCAGCAGAGGCA 437456 28 100.0 32 ............................ AAAGCCATCTTGACCAATCACTGCGTACGCCC 437396 28 100.0 33 ............................ ATGTAAAACCCAAAAACATAAACTCATTTCTAA 437335 28 100.0 32 ............................ TGTGGGCGATTATTAGCAAAAATTGGAAACTT 437275 28 100.0 32 ............................ AAAGCCTATAAGCCCAACGCCACCGTCATTTA 437215 28 100.0 32 ............................ TTTTGCCTGATGCGTGTTTTTTGCAATAAGCC 437155 28 100.0 33 ............................ GCGGTCGTGAAGGCCTGGACAGACTGGGTATCT 437094 28 96.4 32 ...............A............ TGCCACTGTGTACACAGCGTGGCAAGGGTATC 437034 28 100.0 32 ............................ ACCCCAAAATACATCTACACCGATGATAACAA 436974 28 100.0 32 ............................ ACGCTGTAAAGCGTTTAATGTTTTGAGCGTCA 436914 28 100.0 32 ............................ TAACAAATCATCAAGACCACCACCGTCTCCGC 436854 28 100.0 32 ............................ AAGAACTAAACGCCCAAGCATTTGACGAAAAA 436794 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATACCCTT 436734 28 100.0 33 ............................ TTATCACAATGCGTCAAACACAAGAAGCATTTC 436673 28 100.0 33 ............................ AACATTCCATTCAAATTCAGCAGTGTAGACATT 436612 28 100.0 32 ............................ ACAGGCACTATGGGATTGACATTTGGTTTATT 436552 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 436492 28 100.0 32 ............................ TAAGAAAAAGCCCCTGTGTCAAACAGGGGTTT 436432 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 436372 28 100.0 32 ............................ TACAAAATGACAGCTATCCCATCCGCTCATAC 436312 28 100.0 32 ............................ GCCGTGCCCCCATTGATGCCTTTTTTGTCTGT 436252 28 100.0 32 ............................ ATCTTTGTTTTTTGTGATGTTGCAAATCTCTG 436192 28 100.0 32 ............................ AAACGGTGGGGTCTCATACTTCATCAATCCGT 436132 28 100.0 32 ............................ GCACTTTCAATGCTTGGTATCTTGCTGTTAAC 436072 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 436012 28 100.0 32 ............................ CAAGTGAGTTTGATAGAAGCTTTAAATCTTCT 435952 28 96.4 32 ..........A................. TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 435892 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTGTCCAGGC 435832 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 435772 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [435730] 435729 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 435669 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 435609 28 100.0 32 ............................ ATTACAAGGTTTTAAATAATCATTTAACGCTG 435549 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 435489 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.6 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //