Array 1 1060744-1062236 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040458.1 Salmonella enterica subsp. enterica serovar Typhimurium strain TJWQ005 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1060744 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1060805 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1060866 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1060927 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1060988 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1061049 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1061110 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1061171 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1061232 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1061293 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1061354 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1061415 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1061476 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1061537 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1061598 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1061659 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1061721 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1061782 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1061843 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1061904 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1061965 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1062026 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1062087 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1062148 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1062209 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1078368-1080271 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040458.1 Salmonella enterica subsp. enterica serovar Typhimurium strain TJWQ005 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1078368 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1078429 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1078490 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1078551 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1078612 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1078673 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1078734 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1078796 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1078857 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1078918 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1078979 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1079040 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1079101 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1079162 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1079223 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1079284 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1079345 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1079406 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1079467 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1079528 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1079590 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1079693 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1079754 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1079815 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1079876 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1079937 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1079998 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1080059 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1080120 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1080181 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1080242 29 96.6 0 A............................ | A [1080268] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //