Array 1 16840-17456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPP010000010.1 Listeria innocua strain FSL L7-1665 NODE_10_length_18072_cov_59.428008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================== ================== 16840 23 73.9 43 G....C.....GC....T..A.. CGGCTTAATAAAGTTGGAGTTTATAAGTTTTTACCATAGCCAA 16906 23 100.0 43 ....................... TGGATTAATCAATTTAACTTCTCTGACTATAAATGACAACAAG 16972 23 100.0 43 ....................... TAATTTGTCAAACTTAAACAAGCTGGATATTAGCAGAAACCAA 17038 23 100.0 43 ....................... TGGATTAATCAACTTAACTTCTCTGGCTATAACTGGCAACAAG 17104 23 100.0 43 ....................... TAATTTGTCAAACTTAAACAAGCTGGATATTAGAGTAAACCAA 17170 23 100.0 43 ....................... CGGTCTAATTAGTTTAGTGGATTTGCATTTGTCTGTAAACCAG 17236 23 78.3 43 ....C....A.T...G.G..... TGATTTAACTAATCTACGAAGTTTGGATATGGACCACAATCAA 17302 23 78.3 43 ....T...C.....CT.T..... CAATTTAACCAATTTAAAAAGGTTATCTCTGGTCAATAATCAA 17368 23 82.6 43 ......AG.A...C......... TGGATTAATCAATTTAACAGACCTAGAAATAAGGATAAATCAG 17434 23 73.9 0 G...AG...G.......A..A.. | ========== ====== ====== ====== ======================= =========================================== ================== 10 23 88.7 43 ATAAGTGATTTAAGTCCCTTGTC # Left flank : CATAAAAATGATGAATGGGCCTTTTAAGTACTATTATTATACTTACAGAGATTATATACTTTATATGAGAGTATTTTCTTTTGGAAGCTTAGAATGGATATCTCTCAGATAGATGATACATTTTTTAGTTACTAACTATGAGAGAAAGAGGTAGATTACTAATGAAAGAAAAGAAATATCTCCAGCGACTATTCGTAGCATTAACCATCATCATAGGTATCAACGTATGGATAGGAACCAGTGGAGAAACAGAGGTAAAGGCAGCAAATATTACACAACCAACCCCCATTAATCAAGTGTTTCCAGACGCTAATCTAGCGGAATATATACAGAGGGTATTACAAAAACCCAATGTGTCTGCGCCTGTTACACAAGACGAATTGAATTCAGTGGAGAATATAAGTGCTGATTCTGGGCTATATGACAATATAGCTTCTATAGAAGGCGTTCAATATTTAAATAATTTAACAGAATTGCGATTAGAGAATGTGGATAATAGT # Right flank : CCAGTTTAGCCAATTTAGAAATGTTGTATGTTAATTCGAATCAGATAAGTGATATTAGTTCGTTAAAAAATTTGAAAAATTTGGTGCTGTTTTCGGCACAAAGTCAAACAATAGTGAATAAACCAGTGAGCTATCAAAAGAATCTGGTTCTCTTGAATAATATCACAGATAGAACGGGGACGTTGGTATCTCCTTTTGGTATCAGTGATAATGGGGGCTATACTCCCCCCCATATTATATGGGATTTATCAGACTATAAGAAACAAGTGAGTTATACGTTTGACAACAGCGACATGGACTTTCCATTTTCTGGGACCGTCATTCAATCACTTATCGAAGTACCTGTGAGTTATAAGGTGGTATACGATGTGGAGGGGACGGAAACAAGTGAAACTGTTGCAAAGGATACCTTATTAACATCTCCAGCAAATCCAGTCAAAGAAGGGTATACCTTCACAGGTTGGTATGATGAGAAAACGGGCGGAATCGCATGGGATTTT # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.44, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGTGATTTAAGTCCCTTGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 501615-502507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPP010000002.1 Listeria innocua strain FSL L7-1665 NODE_2_length_507757_cov_67.104148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 501615 36 100.0 30 .................................... GACACAAAACCCGTTTGCATTAGGTCTTTG 501681 36 100.0 30 .................................... AGCTTTAACAAGTTTCTGTTTTATAAACCC 501747 36 100.0 30 .................................... GTATTAGTCAGTCAAATAGTCAAAGGGCAA 501813 36 100.0 30 .................................... ACTACCCATCACGATATTGACCGAGCTACG 501879 36 100.0 30 .................................... AATACCTTATATTGAGAAAACGAATTATGT 501945 36 100.0 30 .................................... AATATTTCATTCATCACTTGAGGTGCAGTC 502011 36 100.0 30 .................................... AATCATCTTATCCGTTGTAACTAGTGGTAT 502077 36 100.0 30 .................................... TCGAGGACGTAACGAGTTATCACAATAAAG 502143 36 100.0 30 .................................... TAGTCCAATGCTGTTTTCTGCTGTGTATTT 502209 36 100.0 30 .................................... TGCAAAGGGTGGACAATCTAATCACAATTA 502275 36 100.0 30 .................................... TAGATGCCGATTTTGCAGCTCCAGGGCTCT 502341 36 100.0 30 .................................... TATAAACCGTGTAACCGTTATGCTGTCCTG 502407 36 100.0 30 .................................... AGAAATGATTTTAGGGAATGATATTGCGAT 502473 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACTGCAACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAACGTATGTGCCTATTTAACAGAAGATGAGTTACAAGAGTTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAAATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAAGAGAATAAAAAATTCTACGAG # Right flank : CACTATATTCGAAAATAAGATAAATTTTATATATCAAAACGACTTAGATTTCCTGAGTTTAAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTACCTACTCCAAACATTTTAACCCAACTTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATACCTTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTACCTTTGAGGAATAAAACAGAATTAGCCATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGACTTTTACATATATCACTTAAAATAAAAAGGAGCCTCCATTCATGAAAAAAACCTCAATCATTTTTATTTTATGTATAACTGTACTACTGACAGCATGCTCCACCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //