Array 1 714829-714390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000001.1 Paenibacillus polymyxa strain NRRL B-30509 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 714828 32 100.0 38 ................................ AGCTAAATAACCTTTTGGTTCTTTGAAATGCGCAAGCA 714758 32 100.0 38 ................................ AGTTAGGAGGGAAGTAACATGAGTAAATTGACGCCAAA 714688 32 100.0 34 ................................ CGTTACAAAATCCTCGGTCCTGCTGAACGTGTGG 714622 32 100.0 35 ................................ TTTCGGCAGCGGTAAAGCTCCGATAATTGTTTTGC 714555 32 100.0 35 ................................ GCAAGAGGAGCTCGACCAGGTAATCGCGGATCGTA 714488 32 100.0 34 ................................ TACATCCCCAGCGGCCTGAGCGTCCTTGAGCAGC 714422 32 81.2 0 ..........A.A........AC....A...T | C [714397] ========== ====== ====== ====== ================================ ====================================== ================== 7 32 97.3 36 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAG # Left flank : TTGACTACAACGGTACGT # Right flank : CGCGAGCAATTGCAGATTTTATGACTACTTTACGTAGTTACTCTTTTTAAGGGAGTATGACGTATTCTCGCAAAGTATCGATACAAATCTTATTTAACCTGGCTCCCTTTTAAATCAGGAGAGCCTTTTTTGTCGTGATTTTTATAGTCAGAAAAACGAGTTTGATATGGCGACAGGTGATATTAATTCCAATCCAATAGATGTTTCCAACTACGGGATTTATGTTAACAATTATGAGCAAGGAACTACTTCTCTTCCAGAAAACATAGGAGCTCGCAACTCGACCAGAGCTGAAAAGGCATAGGCGCTTGTAGTTCATGCCAAGAAGGGGCCTGATATCAAGTTAAAGTACCGGCCAGACGTAATAAAGATACATTAAATATGAAGCTAGGAAAGCACAAGTTAGTATTCAGCCGTGTTTATTCACCAAGGATAAGAAAATGGTCTTATTTTCACAGATTACAAATAGAAAATCTTTTGCATAATATATTCCAATAGAA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 459781-460681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000002.1 Paenibacillus polymyxa strain NRRL B-30509 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 459781 32 100.0 37 ................................ ATCAAAAAACTTTTGAGCATAACGGAACGTCTTACAC 459850 32 100.0 34 ................................ ACCTGCATTCGTGTAGGTGCGTATAAGGTATTCA 459916 32 100.0 34 ................................ GACTGCTTCGGCCGGTGTTTCCTCTGCGGCTTTC 459982 32 100.0 36 ................................ CTTCAGATCAGCTTCGTAAATGGTCACCATAACCGT 460050 32 100.0 35 ................................ TTGTTCATGTATCAGCCTCTCCCCCACTGTTTCGC 460117 32 100.0 37 ................................ TGCTGTACTTGTAGCAACTTGAGATTGTCTAATAATC 460186 32 100.0 34 ................................ CCGAAACAAAGGAAAAATACTCAAAATTCATTGA 460252 32 100.0 34 ................................ TTCCTGGATGTGAATGTACATTTGATGCGTCCAA 460318 32 100.0 36 ................................ TCTCTTGTTGTTTGGTTTATTGCCAGGTGTACCAGG 460386 32 96.9 34 ....................A........... AACTAAATAAACAACAAAGGACTCCATACTGGTT 460452 32 100.0 34 ................................ TAAAATTTTTGGAAAAGGGTAGGGGGCTCAAATT 460518 32 100.0 35 ................................ GAAGAAGCTAAAGCGAAATACAATCCGGAATAAGA 460585 32 96.9 33 .............C.................. CCCTAGTTCCACCTGAAGAGCTAGAATTTTTTC 460650 32 93.8 0 .......................A...A.... | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 99.1 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CCAAGTTCCGTATTCGTGTCAATGTCATTTATCCAGGGGCCATTTCGACGAATATTGATGAAACCACGGAGAAATCGGAAGGGTTGAAGCAGATTACCATCCCTGTGCAATTTCCCGAGGGAGATCAGCCGTTGGCAGATGGACCGGGACAGCCCGAACAGGTTGCTGATTTGGTAACATTCTTGGCCTCTGATCATTCGCGTCACATCACTGGCGCACAAATTGTGATTGATGGGGCAGAGTCGTTATTGTTTTAGAAAATGGAGTATTCTCTGGGACAGAGAAATGTTTTGTGGTATCTTAAGTGTATTCTTACTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCAGATCCTTCGCACCTCGAAATTTGTCGAGATGGATTTATATTCATTTTATCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTAAGCATCGTTATTTTCGAAATTATAAGGAATTAATACCGTTAGAGTATTAATTCCTGCATTTTCGCT # Right flank : TTATCTATAGTACCTAACTTGCATAAGAACTCCCAGCAGATTCTTCATGATTGTAGCCAAGACATAATTGATATTAAACTTTAGGAATATCGGTTTAGTTATCTTAAAAATATTATTTCCACATGACTATAAAAATATTTGTTTACATAACGAGAATAAATCTAATATGATTAAGAAGTCGTTGAGAATCTAGTGTTTTTAGGCGAAATACAAACCTCTTCACATTAAACAACCATAAGTTCGTAAAATGAAACCTGAGATAGGATACGGAAACCAAAGGCTTTAAATTAAGTAGATAAAAGAGGAGTATGTAGCATATAACGCTACGACAATATATAAAGAATTGTCGATGAATTCACTTAACAACGCAAGTGTTTAAGTGGTTATTCTGGGCTTTGTCGATATTATCTTATGCATGGTCACACATTTAAATATTTGTTCAATGGAGGTAAATAGATGAATTTATTAGCTATTCCTGGTCTGTATTTTTATATCTATCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 469792-470028 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000002.1 Paenibacillus polymyxa strain NRRL B-30509 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 469792 33 100.0 35 ................................. TTGGTGCTTAAGGGTAGACAACAGGGCTTTACGTC 469860 33 100.0 37 ................................. ACCAGCTGCAGCCGGAGCTACAAACTGGTTAAGGTAA 469930 33 100.0 34 ................................. CGCTAGATGGTAAGAAAACTGCTTATGAATTTAC 469997 32 87.9 0 ..........A...-.........A...A.... | ========== ====== ====== ====== ================================= ===================================== ================== 4 33 97.0 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATTACGTATGATGTAAGCACGGTAGATAGAGAAGGCAGAAAAAGACTGACAAAAGTTGCGAAAAAGTGTGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATCTTAGACTCGACCCAGTTCCGCCGCTTAAAATATGAACTTGAAGAATTGATAGACAAAACGGAAGACAGCTTGCGCTTCTACAATTTAGGAGATAACTATAAAAAGAAAGTAGAGCATATAGGGGCTACGGAAGCTTACGATATGGAAAGTCCTTTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCAATTGAATCAGTTACCATCAGTAAAAGTCAATGGTTGATACAAGCCTTTTTGGCATCAGTTTTTGCGACAATGTGTGAAATTGATATCATTAGAGTATCAATTACTGCATTTTTGCT # Right flank : TATCTTTCATTGTGCCTCCTATCGGATAAGCTGGTTACGCTCCATGTGAGTGCATGGATGATATGAAAAAGAAGTCTCGTTTCGTGCCCCGCCTAGCAGTAAATAGTGCAAATTTCTTTTTAACGGATTCCTTTTTCGACAAATTCCCCCTTACTTTTATGCAATAATTAACTAACATTACTATGTTGAAGCATAAAATTAACTGGGGAGTTGCTTATGAGAATTTCCATGAGTAAGTTTCTAAAACGCTATGTAACGATTTTATTGAGCTACGCAATAGGTATAGGGTTATTTTACGCTTTAGGATATAAGATGAGCGCTATGGGCATCTATGCAATTTTGACAGGAATTGTGACTGGAGAAATAATCAGCTTCGCATTATTAAAGCGCGAGAAATGAACTTATGTATCCCTTGATTGTATCAATATCAGGGGATTTTTCATGTAATTAAAAGGTCCCGTGAGTTTCCGCATGGGACCTCTATACCATTTGTTGGTGAG # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 14247-14548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000016.1 Paenibacillus polymyxa strain NRRL B-30509 contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 14247 32 100.0 34 ................................ AATGTTAAGCGTGATCCAGTCTTTAGACTGCACA 14313 32 100.0 35 ................................ TGTTCAAAATCGCTGCACGCAGCAATCTAAACAGC 14380 32 100.0 39 ................................ TTAGCCAACTTATATCGAGCATTGAGCCAGTGGAATAAA 14451 32 100.0 34 ................................ ATCCTTACCGTTAGCAAATGCTAAGTTCTTTTGA 14517 32 93.8 0 .........................G....C. | ========== ====== ====== ====== ================================ ======================================= ================== 5 32 98.8 36 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : ATATGATTACACCAAGATACTATAGGATTTGTTTTGTGGAAATACATTCTATAGGGTATATTTATCTTTTAGATCTCGATGTTGACTCATAGCATCCTGGGGACTCGATATGATGAAAGAGTTAAGAAGAATATATGCCGGCAGTTTTGTCCTATTTTTTAATAACATTGAAGTAATTGGATAAATGGTTTACAAAAAAGAAAGCGGACTGTCATGATGAACGATGATCCAAGGGAAATCGGGATGAAGGCGTAGCGTAAAAGAAGAAGAGCAATAGGGGGGAAGAAGATTCCGATATGGAAAGCTCACTGAATTTATAGGGTGCGAATGTGAAGCTCACATGAAAATCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAACAATTGAATCGGTTACCTTCAATAAAAGTAATGGTTAATCCAACCCCTTTTGGCATCGTTTTTTGTGATTATGTATGGAAATGATATCACTAGGGTATGAATTACTGCATTTTCGCT # Right flank : TACGCAGTCTCTTCATAGCTACCAAAACATCCTCTATGTCGCATTAGCCCCCTGAGAATCTCTTTTTTTGAGATCTACAGGGGGCTGTTTTTATAACAGGACTTATGAAAAATATCGTTATAGCTTGGTATTTAGTTACGATTATAAATATAATTTTTTACTTAATTGGGATATAAAAATTAATTAAAGTTTATAAAACATTATTAAGAAAATTTATCCTTGTAAAATACATACAATCATAATTATAATTAACATGATCCTTAATGCCTATGTTAATCAGGTTCTTTTTTCCTATTCCATAACATGAGTTAGATTATTTTAGGGGTAATTAAGAAGAAATAGTACAGATATAAGATTGATAGAAAGGGCCTGAGAACATGGGAGAAATTAAAGCCAGCAAAGATAATAAGGTTGAGAATGTATTTGAACGTATTCATCAGAATTACCGTTACCTGAATCAAATGATGGTAGAAGAGATCGATATTGCTTCTGAGCATGGA # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 22645-22878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000016.1 Paenibacillus polymyxa strain NRRL B-30509 contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 22645 32 100.0 33 ................................ TTCACAGCGTTGAAAGCCGTTGACGTGCTTGTC 22710 32 100.0 37 ................................ ATTTAAATATCCTCCTTGTACGATATCGTGATACTGA 22779 32 100.0 36 ................................ CAGTGGAATACTTGCTTCTGGAGCTGTCATAATAAT 22847 32 81.2 0 ......C.............A..A.....CGC | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 95.3 36 GTCGCATTCCATGTGAGTGCGTGGATTGAAAT # Left flank : ACAGTTTACAAAGCGCTGAAACAGGATGTGCTTACAGCGCATCATCAGGATTATAACGGCATTATTGTAGAGCCATATCGTAATGATATTGAGTACAAGGCTCCACGTGATGATGATTCTCCCGTCCCTATTCCATTTCTTTCAGCGTCGGCTCACTTTGAAATTACATTAACATGTGAGGGAGAGCCTGAATCGGCTATGAAGTGGCTAAGTTTGGCAAAAACAGTCCTGCTCGGAGCGTTAAGAGATGAAGGCATTGGCGCGAAGACCAACGCAGGGTATGGAAGGCTTTTAGAGATTGAATGATAGAATCGTGAAGGTGCGAATGTGAAGCTCACATAAAACCCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTAATTAAATCAATTACCTTCATTAAGAGTCAATGTTTGATTAAAGCTTTTTTGGCATCGTTTTTTTGCGCTAATGAATGGAATTGATATAATTAGGATATGAATTACTGCATTTTCGCT # Right flank : CGACAGCTCACAGAAGGAAACACAGGAATTTCATCCAATGAGGATGAAATTCCTGGAGACGATAATGTAAAACTTCCCAATAATAAAAATAATTACATTATTACGAATTTAAGCAAAAGACTGTCAACTACCCTAAATTGGTTAGGGATGGTATAGGAATGTCGACAGGACTGGTACACTTTGGACAGCGAGATTATGCCACGATAGCAGGACGCTGGAAATGGATTCGATTTAATTTGAGGATGGATATGGATAAGATAAGTATTTTAATAGCCTCGGACTAAATTGAATACCCATCGGCGGAAAAGTTAGTAACATATAATTAGGTAATTTCGGAAATGCTTAGAAGGTTTAAATCTAGATGATATTACTTAGTATTTCTTCTAAATTGTCCTTGAAGAATAAACTAAGCAGCCAAGTTTATTTAGAGAAGAAGCTGATTACCTGGAAATTCGAAGTTAGTTAAATACAGATTGATTTTTTCGATTTCATATCTAACA # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 108143-108374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000016.1 Paenibacillus polymyxa strain NRRL B-30509 contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 108143 32 100.0 36 ................................ ACCCTAAAGGCTTTGCGCGCTATCAGGCATAATATC 108211 32 100.0 34 ................................ TGACCAAGCTGTTTAGCCAGCCAATCATATCGAA 108277 32 100.0 35 ................................ TTCCTGCAAATCGTCTTAGCCGGGTGCATCAATTT 108344 31 75.0 0 .........T..A....-...ACT..C..C.. | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 93.8 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TTGCTGCTTCAGGAACCGGTTCTCCGCCTTTACTTTTTCAAGCTCTGAGGAGTGTTCCGGACCTTTTCCGTAGCTGTATTGTTTACCCACAGGCTGCTCCAGACGATGCACTTCGCCTTTTCGATACCACCTCATCCATGTTTTTAGCTGTGTCTTATTCCGTATTCCCAGTTGCTCCATAACCTCTTTTACCGGAACTCTTGCCAATCTCATTTCAATAGCTTTCATCTTTATTTCTAGGGGGTAACTCACTCTCGTTGCCAACGTAAAAACACCTCCAAGGTTATCTCCATATCTTACGACATGGCTTGATTCTCTTGAAGGTGTTTTGATTTGTCTCACGTTATGGGGTCAGTCCCGCACCTCGAAATTTGTCAAAAGTCATTCGAATCAGTTACCTTCAGTAAAAGTCAAGGTTTTATCCAAGCCTCTTTGGCATTAGTTTTTGCGACAATATGAGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCT # Right flank : TGACAGTCCGCAGAAAGGAACATGGAAATCCCTTACCCAATGAGGGTGAAATTCCTGAAAACGATACTGAAAAGCATCACAAAATTTTAAGAAGCCTTACTCGTGACTTATGAAGTTAAGGCCTAGTAAAAAAAAGACCTACTAAATTTTAGCAGGCCTTAAAATATATTAAAGTCATCACTTTTTGTTGCTACCTATTTGGTCAAAAAGTCTTAAAATATTGCCAATGCTATTCCCCTTGCGCCCTACCAATAGCCAGAAATCCATCGATGCTTATTTGAAATTGTTAGTTAGCAATTGGTAGACCTCATCTATAATTTTAACAAGTTCTATAATGCAAAATATGATTGCATTAATGCCTATCAAAACCAATAATAACATTTAGTTACTAAGAATCGAGCATGGTAAAGAGGTGTCAATGATCTGAATTTTCGTATGAGAGAGCTTTAAAAATACAATACTTTATCCCTTCATATAACTAAATCACATTAGTTTAATCC # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13122-13763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000024.1 Paenibacillus polymyxa strain NRRL B-30509 contig00024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 13122 32 96.9 36 ...........C.................... GGCGGTTCATGGCCGTTTACTTCATCCAAAAGCTTC 13190 32 96.9 36 ...........C.................... AACACGTCCACCCAGCAAGTAGCCGGCAGCTACCAG 13258 32 93.8 37 ..........T....G................ ATATACGAAGAGGCATTCTTTAGCCCCAGCGAATCTG 13327 32 96.9 33 .........................G...... AGTAAGAGTAAATGAAACGGCGTAACCGTCTGC 13392 32 100.0 35 ................................ ATGAAAGTGTCTAGTAAAAGGATACTAATGAGCGT 13459 32 100.0 35 ................................ GGAAGCTTTGCGCTCCAAATATAATTTCTTGCAGC TGATTC [13472] 13532 32 93.8 34 .............C.G................ ACCAAAGAGGTATTGTAGAAACGCCCCATCCGTG 13598 32 93.8 35 .........T..A................... AACCATCTATAGTCGCAAGCGACTTTGTGGTAGAG 13665 32 100.0 33 ................................ TTTATAGGCATAAAGAAATCATTCGAGTAAACC 13730 32 84.4 0 ...T.....................A...TGG | CC [13755] ========== ====== ====== ====== ================================ ===================================== ================== 10 32 95.6 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : AATAATTCATAACATACTGTTGTGCGCTACAATGTAGATTAGAAGACCTTTGGATACGTTGTTTTTTCTGTCGCACTCTATGTAAGTACGTGGATTAAAATATTTGCTGTCATCAGGCTGTCGCCCTTTTTTTGTTTTGTCGCAGTATGAGCACATGGATTGACGCACAGCTCACTGAGAGGAACACGGGAAATTCTTGAAGACGGAACTGTATCCGTCCTGGTTTTATTGTCCCATTCCATTTTTAGATTCGGCATCTGTACGTGTAGAAGCTAATATCACACTGTTTTAGGATCTTGTAAAATTAATAGATATTTCTGGTGCGAATGTGAAGCTCACACAAAAACCCCGGGTCCTTCGCACCTCGAAATGTGTCGAAAAGCAACTGAATCAGTTACCTTCAGTAAAAATCAAGGATTGATCCAGGCCTTTTTGGCATCCGTTTTTACGATAATGTGAGGAATTGATATCATTAGGGTATGAATTACTGTTTTTTCGCT # Right flank : GAGCAGCCGTCACCTAGTCGTACGATTGGAGAGCGCTTCTTTATCCGAATAAAAGATCCAATAAGTGGAGGAACGGATATTTTATGCGATTTGGAGGGTGGGCGACGATTTAGTACACTTCCCTGTGGGATTAGTTGATCTTGTAGCAAAAAGATGATTTTTACTTCCATGGATGCCCTAAACATCCGCCGTTAGATAATGTGAATGTTCTATTATGGTGCGAATGTGAGGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATGTGTCGAAAAGCAACTGAATCAGTTACCTTCAGTAAAAATCAAGCGTTGACCCAGGCCTTTTTGGCATCAGTTTTTACAATAATGTGTGAAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCTGTCGCACTCCATGTGGGTGCGTGGATTGAAATCTTCATCACCGAAGTCCATCGAACGCTGCTGCTGAGTCGCACTCCATGTGGGTGCGTGGATTGAAATAATC # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCCACGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 14160-14728 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000024.1 Paenibacillus polymyxa strain NRRL B-30509 contig00024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 14160 32 96.9 35 ...............G................ CTTCATCACCGAAGTCCATCGAACGCTGCTGCTGA 14227 32 96.9 36 ...............G................ AATCTATTAAAAGAAAATATTTTAGACTCAATGGCA 14295 32 100.0 33 ................................ TTTTGCTTGTCTAAGTTGATCTTCTTCATACAA 14360 32 100.0 35 ................................ TTCAAAAATGGTCATTTTGACTTCGGAATCATCGC 14427 32 93.8 36 ...........C...G................ CCTGCTGGATGCAGCCTGGTGTTATTGCCCAGGCTC 14495 32 96.9 36 ...............G................ CCCAAGCTTAGATAGTCGGTCAAGTTCGCCATTACA 14563 32 100.0 34 ................................ GTTATGATTACAAAAACATCAAGTACAACACCTT 14629 31 87.5 37 .........T..A.-..A.............. ATACTGTTCGCGAATCGTGGAGTATAGTTTGTCCGCT 14697 32 93.8 0 ...................A..A......... | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 96.2 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TAGAGGTCGCACTCCATGTGAGTGCGTGGATTGAAATTTTATAGGCATAAAGAAATCATTCGAGTAAACCGTCTCACTCCATGTGAGTGCGTGGACCATGATGGAGCAGCCGTCACCTAGTCGTACGATTGGAGAGCGCTTCTTTATCCGAATAAAAGATCCAATAAGTGGAGGAACGGATATTTTATGCGATTTGGAGGGTGGGCGACGATTTAGTACACTTCCCTGTGGGATTAGTTGATCTTGTAGCAAAAAGATGATTTTTACTTCCATGGATGCCCTAAACATCCGCCGTTAGATAATGTGAATGTTCTATTATGGTGCGAATGTGAGGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATGTGTCGAAAAGCAACTGAATCAGTTACCTTCAGTAAAAATCAAGCGTTGACCCAGGCCTTTTTGGCATCAGTTTTTACAATAATGTGTGAAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCT # Right flank : TATTCCAAGCGTTCATTGTATGGTCAGAGCCAACGATGTCGCACTCCATCTGTCTAACTATGCTACCGGTTAGCTTAATGACTCATTATTAGTCTAATACTTTATTTTCTTTTAACAGCAACAACATCAAGTGCCAATAGCAGCTCCTTCCGGGCAAACAGAAGGGTTATATATACCATAAGGAACACACATTCTTTCAAACGAACGGAGAATAACCTTACCGATGCACAGAAAAGCTCAAAGGACCACCAGAAGCGACTTCTAGTGGTCCTTTGAGCTTTTGTTCTTATACTAACTCATTTTCGCTAAGGACTCATAGCCAAAATAATATATCAGAGGAGGAAGCTTTATCATTAAATATAGTCTTTCTTATTTACGGATTATTACCAGCACTAACCACGACTGAGAAAATTCCCTCTTCGTCGTGATTCAAGATGACGATAAAGGCCCCAGACTTAGATTTAGGATTGTTAGCTGCATCCAGATCGTACCAACCCCTC # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCCATGTGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8258-8422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000043.1 Paenibacillus polymyxa strain NRRL B-30509 contig00043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 8258 32 100.0 32 ................................ TGAAAAAGTGGCCGCTAAGTGAAACATTTTTG 8322 32 100.0 37 ................................ TGGACCTTTTCTTTTTCCTTTTTTCCCTTGCCCTTAA 8391 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 3 32 100.0 35 GTCGCACTCTATATGAGTGTGTGGATTGAAAT # Left flank : ATAAGGCATTCTTGATAACCTCCTGAGTTAAGAAAATCATTCGATGTAGCTTTACACCAGCATACTACAACATATTGAAACTAACTCGCCCATTGGCGTACGAAAGCCGACAAATGGCCAAATGTTATCGGGTATCCACCGGCATGATCTATTCAAAATTCTCACCATTAAACATCACTACCTTCGCTTGCTTCACTTAGGATAACCTATAATAGGATACCAACTTATTACTGGATTTTATAAACTTATACTTATCATGCATTAAAACTTATCGCCCCTTTGCATCCACTCGGTAAGCGTAGATTAGCAGCTATACCTGGTGCGAATGCCAAGCTCACATGATTTTCCCGAGTTATTCGCACCTCAGATTTTGTCGAAAACGCGTTGAATGTGAACAACACCAGAACTTTAATCAGTGATTTTAGTATAATCTAGTTACCATATATACTGTTGTACGCTACAATAGAGATAAAGGCTCTTGGTTACCGTAGTTTTTTGCT # Right flank : ACGGCTGCCGAAGCAGCAACCGTACCTAAAGAACTCA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 555-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000025.1 Paenibacillus polymyxa strain NRRL B-30509 contig00025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 554 32 100.0 37 ................................ CGCGTCTGCGCTCCCATACGTCTGATACCAGGATGTC 485 32 100.0 38 ................................ CAGCCCTCAAAATCCATGCCGCGAATTGAAACGATACC 415 32 100.0 35 ................................ TATACGGCTATGTTTAACATTGGGGTCTACAGCCA 348 32 100.0 33 ................................ CACCAAAAACGCGTTATCTTCTTGTTGGCTTTA 283 32 100.0 38 ................................ TCCACGCTGAGGATAACGCCTTCTTGTTCGGGGATGGC 213 32 100.0 35 ................................ GCTTAAGTCTCCGCCGTAATCGTCGAAAAATTCGT 146 32 100.0 35 ................................ ATAGAGTCGATGACGTTGGCAGCCTAAAGGACATT 79 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 8 32 100.0 36 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAG # Left flank : CGCTGAAAACAAACAGAGATAAAACATATCTACGCATGAAAAGAGAAGTTATGTCGCTGAACGAACTGGAACATGCGTACATAGCCAACAAACAAGACTATCAAGCCCGCAAAGCGTTTTTCAAGAAAAACAATCTATTTCCCTTTTCTGTGCATGTTTATGGGTAATTCGAGGTGCTTTATAGTCAAAAAAGAACAATATATAAATCTATTATATCGTATAAATAAGAGAGTTGTAGTTTTTTTGTGGTAAAATAGTATCTAAATTAAGTTGATTGACCTGCTCTTCAAAAATGGAGTGACCATAGGAAAGATGATTCGGTGCGAACCCCAAGCGCACATAAAAATCCCGGGTCCTTCGCACCTCGAAAATTGTCGGAAAGTATCGAATCGGCTATCTATCCGCAAAAGTCAATAGTTGATTCAAGCTTATTGGGCATCATTTTTTGCGACAATGCGTGGAAATGATATCCTATGGATATGAATTACTGCATTTTCGCT # Right flank : GAAGGAGACGTTTGGTGTCAAAGCTCTGAATACAGGGTCGCACTCTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3185-2887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000025.1 Paenibacillus polymyxa strain NRRL B-30509 contig00025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3184 32 100.0 34 ................................ AGGTCCATCGACTGGTTCCTCTTTGATTTCCTCA 3118 32 100.0 35 ................................ TATGAGTTAGGGGAGGCCATCGTCCCGGACGCAGA 3051 32 100.0 34 ................................ AGTCACAATGATACAACCAGCAGTAACATTCATC 2985 32 96.9 36 ...................T............ TTTTGTCATGGGTTGATCATCCTCACTAATAATATT 2917 31 87.5 0 .......T-..............A.......G | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 96.9 35 GTCGCTCCCTATGTAGGAGCGTGGATTGAAAC # Left flank : GGATAAGGCTTTGTAACGCGTGCTGTCGCTCCTTATGTAGGAGCGTGGATTGAAAGGTATATAGGGGTATAGGGTAAGAGGCTGTAGCTCCCTTTATGGGAGCGTGGATTGAAACGGCTTGAGCTTCCACGCCTTCATTTCCTCTTTCTGGGTCGCTCCCTATATGAGAGTGTGGATTGAAACAGACGCATGGTGTAATAACCCCAAGTAGGCTGAAGAAGTCGCTCCCAGTATTGAAGTGTGAAATTTAAACTCAGCTCGCTATACTCACATCCGTAAGTTCGTTGCTTCTCACAGGGTGATGTACAATAAACAATTTAACCTTTAATTTGGTGCGAACCCTAAGCGCACATGAAATCCCCAGAACATTCGCACCTCGCGCCAGACAAGGAATTCAATGATTTTGGGGTAAGATTTTTAACATTTATTGATGAGTTGAAAAGAGATTCGTGAAAAAGCGTTTACAAATCCTTGCTGGATAAGGCTTTGTAACGTGTGCT # Right flank : TATGTATTTCTCATACCGCACATATAGCACAGCTATGACGTTCCTCATTTTTCATTGAAATACACAAAAAGGTTTGCCCTAGTACTAGGCAAGCCTTCTTGTGTGCTGGTTGTAATATGGAAATAGGTTCAAAATGAACTAACATTTTTATAGACGTGGAACTGTTCGGAACACCACTCTAAAAAGTGAAACATAAAAAAGAAGCCCGTTTTGAAAACAGACTCCTTAATGTACTCCCACGTTAATATGCACAAACCACACTATTCTGTTTCTTCAAACTGCATTAACACGGAAATGTCTTTGATCTCCAGAGCATGAGCGATCTTTTCAAGCATAAGCAAGTTTACTTCTTGTCTCCCATTTTTACAAAGCTGTGAGATTCTTGCTTGATTAACACCTGATTTTTCCGAAAGTTGCATTTGCGTCATATTGCGCTCTTTTAACACTTCTTTAAGCCTTATATTTAATTTTAGCAAGAAAAAGAAACCTCCTAAAAACTC # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGTAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 3 12218-11984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000025.1 Paenibacillus polymyxa strain NRRL B-30509 contig00025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 12217 32 96.9 36 .......T........................ AGAAGCCAATAACCATTGGGCGCTTGGAATTTTGTA 12149 32 100.0 36 ................................ GGGCCTCTGTCTGGCTCAGTGGTGACTGATATTATC 12081 32 96.9 34 .............................G.. ATCCTATCTTCTTCCCTTCTTATTGGAGTCTATG 12015 32 81.2 0 ........C...A.G.....A.AC........ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 93.8 36 GTCGCTCCTTATGTAGGAGCGTGGATTGAAAC # Left flank : TGAGTATATTGAGAATTATAATGACTTAAAAAAGAGCCTAACGGAGAAATACGGCAAGCCTAGCAGTGATGATACCCTTTGGAAGGGAGATTTATACAAAGGCACGCCAAGCCAATGGGGAATGGCTGTAGCGACAGGCGAATTGCATTATCAGACAACTTGGGAGACAGAAGATACAGAAATTTTGCTTGATTTACAAGGTGATAATTTCGAGCCCCGCCTGAGTCTAGTGTATGGTAGCAAGGAACTACAGCATTTGAGTGAGCAGCAAAAGGATCAGGAATTGAAAAAGAATTTATAACAGTATAAGGCATGGATTTCATAGGCTTTAAGTGCGAACCCCAAGTGCACATGAAATCCCCGGAACATTCGCACCCCGCGCCAGACAAGGGATTCAGCGATTTTGGGTTGTGTCTTTTTACATTTATTGGTGAGTTGAAAGGACATTCGCGAAAAAGCGTTTACAAAGCCTTGCTAGATAAGGTTTTGTAACGCGTGTT # Right flank : CAGCCAGAACTGGCGACTCGTCACTCTCTGGACGTGAGAGGTACAACAACCAATAATTGTCCTTTGATCTTGTGAAAAAATAAAATAACCCAAAAGCACCGAAGGTTCTCCTGAAACGGGAACTTGGGTGCTTTTTGGCTTTTTGTATTTTAGGTTAGCGAAATTCTCCAAGTGATAGAGAACGTATGCGAGAATAATGTAGAATCATGGAAAATAATCCTGTAAAATTTTCCATCATAGAGTATAATGTTCTATAAAAGAGATACTTTAGCCTATTTACAGTTGTTTTTTCTCGGGAAATAGTTCATTAAAACTATATAATTAGTCATGATGAGAGGTGAGTTTATGAACTACAAAAATCGCATTTTACCGCCTGAACTGAAGGATGTAAAAGAAAATTTAATAAGTGGCAGAAAGCAATCAAAAGAAAAGAAGCCCTACGAGATCAAGATTGTCACCCCCATGTTCGGAGGCGGCAACGAACCGGGGGAATTGGATGA # Questionable array : NO Score: 6.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATGTAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38-598 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000052.1 Paenibacillus polymyxa strain NRRL B-30509 contig00052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 38 32 100.0 36 ................................ ACACTTTGAGGACATGACAGATGAGATACTGCACCA 106 32 100.0 33 ................................ CATAATCCTCCTTAAATTCGCTTACATAAATAA 171 32 96.9 34 ...............G................ GATATCGGACACGTATAATCCGTATCTTTAAACC 237 32 90.6 34 .........T..A..........C........ CTTGTCAAAATTCGGATCGTCAACGTTCCGCTTC 303 32 100.0 36 ................................ CCCTATAGATTGCAATCTTTTTAACCCACTCACCTA 371 32 100.0 34 ................................ TAATCTGAACAGATCATGGCCATCCAGGTATTTG 437 32 96.9 34 ...........C.................... ACTTTTCTCGTCCTCACTATATGAAGCCTCTACG 503 32 93.8 33 ...........C.............C...... TTTGGCTTGTGCTGGTTGCTGGGCGATAGACTG 568 31 90.6 0 ...............G..T.-........... | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 96.5 34 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TGTACAAGCTACATCGAAGTAGCGCGTCAGAACGGTAG # Right flank : GCCCGGTCCAGTGCTGGTATCTATACTTCTTCGTTTCTCCAGTGTCAGGATCAATTGCGGGGTCTCCTTCTAAGCCAAGAACATCCTCTTCCTTTTGACCGAATTCTACGTAGTCCGTTATGTCTGCAAAAAGCAATTTTCATGTACTCT # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 516-151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000045.1 Paenibacillus polymyxa strain NRRL B-30509 contig00045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 515 32 100.0 35 ................................ TCATAATACTCGTCTAACAAATCAACGGGTATCAT 448 32 100.0 35 ................................ CTTTCGCTCGTCCAAGTAAACCCTTGTTTCTTCAA 381 32 100.0 37 ................................ TGAACTGCCACAATTACCTTTTGCGCATCCCTTTGCG 312 32 100.0 34 ................................ ACTTTTCTCGTCCTCACTATATGAAGCCTCTACG 246 32 93.8 33 ...........C.............C...... TTTGGCTTGTGCTGGTTGCTGGGCGATAGACTG 181 31 93.8 0 ...............G....-........... | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 97.9 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : CGGGGTCGCACTCTATGTGAGCGCGTGGATTGAAATTATGATTGTGTCATATACAAATAGAAAGAAGCTGAGTCGCACTCTATGTGATGCGTGGACCATGATGGTGTAGCCGTCACCTGGTCGTACGATTGGAGAGCGCCTCTTTATCCGAAATAAAAAGGTCCGATAATTGGGGGAACGGATATTTTATGCGATTTGGAGGGTGGCCGACGTTTTAGCACACTTCCGTGGGGGTGAGCTGATCTTGTAGCAAAAAGATGAGTTTTACTTCCATGGTGCCATAAAAACCTGCCGTTAGATAATGTGAATGTTTTATTATGGTGCGAATATGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATGTGTCGAAAAGCAACTGAATCAGTTACCCTCAGTAAAAATCAAGGGTTGATCCAGGCCTTTTGGCATTAGTTTTTTGCGACAATGTAAGAAATTGATATGATTAGGGTATGAATTACTACATTTTCGCT # Right flank : TGCCCGGTCCAGTGCTGGTATCTATACTTCTTCGTTTCTCCAGTGTCAGGATCAATTGCGGGGTCTCCTTCTAAGCCAAGAACATCCTCTTCCTTTTGACCGAATTCTACGTAGTCCGTTATGTCTGCAAAAAGCAATTTTCATGTACTCC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1277-912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000045.1 Paenibacillus polymyxa strain NRRL B-30509 contig00045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1276 31 100.0 34 ............................... AAAGGTCGCTGCTTTGTCTGATGGAGTTTTTAAG 1211 31 100.0 36 ............................... TGATCAAGTGCTGGTATATATCCAGCCAATGCCTCG 1144 31 100.0 35 ............................... AATTTTATCTTGTGAACTTTTTGGAAGTAATCCTG 1078 31 96.8 37 ...........A................... AGGTCTTTGCTCGCTTGAACTATGTCCTGAATCGGGG 1010 31 90.3 36 ........T.....A.C.............. TATGATTGTGTCATATACAAATAGAAAGAAGCTGAG 943 30 74.2 0 ........T.....AT-.......C...TGG | AC [915] ========== ====== ====== ====== =============================== ===================================== ================== 6 31 93.6 36 TCGCACTCCATGTGGGTGCGTGGATTGAAAT # Left flank : GGGAGTGCGTGGATTGAAATCACCACTTTACACCCAACCCTTTGTTACCAAGCACGTCGCACTCCATGGGAGTGCGTAGATTGAAGTAATAAGCTCGTTCCTCTTTTGAAGCTTCCATTCCTGATCGTACGATTTGGAGAGCGCCGCCTTATCCGAAATAAAAAGGTCCGGTAAGTGGAGGAATGGATATTTTATGCGATTTGAATGGTGGGCGTCGGTTTAGTACACTTCCGTGTGGGATGAGCTGATCTTGTAGCAAAAAGATGATTTTTACTTCCATGGATGCCATAAACACCCGCCGTTATATAATGTGAATTATAGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAATTTGTCGAAAAATAACTGAATCAGTTACCTTCAGTAAAAATCAAGCGTTGATCCAGGCCTTTTTGGCATCAGTTTTTACAATAATGTGTGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCTG # Right flank : TGTAGCCGTCACCTGGTCGTACGATTGGAGAGCGCCTCTTTATCCGAAATAAAAAGGTCCGATAATTGGGGGAACGGATATTTTATGCGATTTGGAGGGTGGCCGACGTTTTAGCACACTTCCGTGGGGGTGAGCTGATCTTGTAGCAAAAAGATGAGTTTTACTTCCATGGTGCCATAAAAACCTGCCGTTAGATAATGTGAATGTTTTATTATGGTGCGAATATGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATGTGTCGAAAAGCAACTGAATCAGTTACCCTCAGTAAAAATCAAGGGTTGATCCAGGCCTTTTGGCATTAGTTTTTTGCGACAATGTAAGAAATTGATATGATTAGGGTATGAATTACTACATTTTCGCTGTCGCACTCCATGTGAGTGCGTGGATTGAAATTCATAATACTCGTCTAACAAATCAACGGGTATCATGTCGCACTCCATGTGAGTGCGTGGATTGAAATCTTTC # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2171-1690 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000045.1 Paenibacillus polymyxa strain NRRL B-30509 contig00045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================================================================== ================== 2170 31 90.3 36 ..T.........T.G................ ACCTGGCCCTTGTCCAGATCGTGAATGAGGGTAACG 2103 31 93.5 37 ............T.G................ TTTTGAAAAATCTATCGTATATCACTAAAGCGACGAG 2035 31 100.0 35 ............................... CTTAGAAAAGCTTTAAAGCCAGTTTCACGGCAATG 1969 30 90.3 85 ............T...A......-....... TGGAGGCTGTAACCTACAAACTCCTGTCCAACGATATGAAATCAGCACTGGAAGAACTTCGAGAACCACCTACAAGATCACCACG 1854 31 83.9 36 .T..C.......T.GT............... TGCCTCACATTTTTGCGAATATTGACTTAATACAGG 1787 31 100.0 36 ............................... CACCACTTTACACCCAACCCTTTGTTACCAAGCACG 1720 31 93.5 0 .....................A.......G. | ========== ====== ====== ====== =============================== ===================================================================================== ================== 7 31 93.1 44 TCGCACTCCATGGGAGTGCGTGGATTGAAAT # Left flank : AGTGCGTGGTTAGAAATTAGATGCTGTAACCTACAAACCCCTGTCCAACGATATGGAATCAGCACTGGAAGAACTTCGAGGAGTATATGTCGACCATTTTGTCCTTACATTGATTAATAAAAAATTGATTCATAGTAAAGGATTTTACACAAAAAAAAATGAGGCTGTCATGAACTACATTAATGTATTTCGGATTTGACCCCATTTCGAAGTTCGAAGTATGAACTCGGAGAGTTGATACCAAAAAGAAGACAGCTTGAAGTAGAGCATATAGGGGCTAAAGAAACTTATGACTTGGAAAGCGCACTCGATTTGTAAGGTGCGAATGTGAAGCTCACATAAAAACCTCGGGTCCTTCGCACCTCGAAATTTGTCAAAAAGCAACTGGATCAGTTACTTTCAGTAAAAGTCAATGGTTGACCCAAGCCTTTTTGGCATCAGTTTTTGCAATAATGTGAGGAATTGATATCATTAGTGTATGAATTACTGCATTTTCACTG # Right flank : AATAAGCTCGTTCCTCTTTTGAAGCTTCCATTCCTGATCGTACGATTTGGAGAGCGCCGCCTTATCCGAAATAAAAAGGTCCGGTAAGTGGAGGAATGGATATTTTATGCGATTTGAATGGTGGGCGTCGGTTTAGTACACTTCCGTGTGGGATGAGCTGATCTTGTAGCAAAAAGATGATTTTTACTTCCATGGATGCCATAAACACCCGCCGTTATATAATGTGAATTATAGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAATTTGTCGAAAAATAACTGAATCAGTTACCTTCAGTAAAAATCAAGCGTTGATCCAGGCCTTTTTGGCATCAGTTTTTACAATAATGTGTGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCTGTCGCACTCCATGTGGGTGCGTGGATTGAAATAAAGGTCGCTGCTTTGTCTGATGGAGTTTTTAAGTCGCACTCCATGTGGGTGCGTG # Questionable array : NO Score: 7.73 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:-0.73, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCATGGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 4096-2654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000045.1 Paenibacillus polymyxa strain NRRL B-30509 contig00045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 4095 32 100.0 36 ................................ TTGCAATATAATTTCCAAGGAGGAATAATCTGTGAA 4027 32 100.0 34 ................................ AGATGGTAGTGCCGAAAAGTTTATAAAGCTTGCT 3961 32 100.0 36 ................................ AGTAACACTATCCTTGGTAATACCCAAAAACTCAGC 3893 32 100.0 34 ................................ ATAGTCGTTGGCACGTCAAATAAAAAAGCAACCA 3827 32 100.0 38 ................................ ATAAATGAACGATACATTTGTATATCTGCCATATTAAA 3757 32 100.0 37 ................................ TTGCCCCATCGCCGGAACAATTTTGTCACGCATGGTA 3688 32 100.0 34 ................................ ATTTTCCCAATACGCACGGAAAGCAGCTACAGCC 3622 32 100.0 35 ................................ AACCATCATGTCCGCATCCTCCGGCAACTCCTCGG 3555 32 100.0 35 ................................ AAACCAAACTTTGAAGTATTCCGGATCTTTATAAA 3488 32 100.0 35 ................................ ACATCAGAAACCAGCTTGTCCAACATAGGAACCAC 3421 32 100.0 34 ................................ CTTTTCGAAGATTTACGCGAAGGAAAATGACGTC 3355 32 100.0 34 ................................ ACTTCAATGGTCGTTTTATCCAAGCTGTAGGGGC 3289 32 100.0 37 ................................ TACAGTCGTTTTCCCCATCCGGGTATCCTCCTTTTAA 3220 32 100.0 36 ................................ CTCGTCTGCTCTAGATTTACGAAGATAATTAATAAT 3152 32 100.0 37 ................................ TATGAGTATTAATAAGCCCCTTTACATCATTTACAAC 3083 32 96.9 36 ......T......................... TTCATTGTTTCGTCGTACAAATCTTGCTCATCTATG 3015 32 100.0 34 ................................ GATATCGGACACGTATAATCCGTATCTTTAAACC 2949 32 90.6 34 .........T..A..........C........ CTTGTCAAAATTCAGATCGTCAACGTTCCGCTTC 2883 32 100.0 33 ................................ ACCCCTTGATGTTCTTTATACTGTGTTTGGATA 2818 32 96.9 36 ......................A......... TGATTGTGATTGTCCGAAAACATCTACCTATAATGT 2750 32 100.0 33 ................................ AGCCATACATCGTTTACATACGCAATTACTGTC 2685 32 90.6 0 ............T...........T.A..... | ========== ====== ====== ====== ================================ ====================================== ================== 22 32 98.9 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : GTCGCACTCTATATGAGTGTGTGGATTGAAATACTTCTCCTCGTTTTTTGATATTAAAATTGGTATCAAAGTCGCACTCTGTATGAATGCGTGGACCATGATGGAGTAGCCGTCACCTGGTCGTACGATTGGAGAGCGCCGTTTTATCCGAAATAAAAGATCCGATAAGTGGAAGAACGGATATTTTATGCGATTTGGAGGGTGGCTTACGGTTTAGTACACTTCCGTGTGGGATGAGCTGATCTTGTAGCAAAAAGATGATTTTTACTTCCATGGATGCCATAAAACCTGCAGTTAGATAATATGAATGTTTTATTATGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGAAACTGAATCAGTTACCTTCAGTAAAAATCAAGCGTTGATCCAGGCCTTTTTGGCATCAGTTTTTGCGACAATGTGAGAAATTGATATCATTAGGGTATGAATTACTACATTTTCGCT # Right flank : TAGATGCTGTAACCTACAAACCCCTGTCCAACGATATGGAATCAGCACTGGAAGAACTTCGAGGAGTATATGTCGACCATTTTGTCCTTACATTGATTAATAAAAAATTGATTCATAGTAAAGGATTTTACACAAAAAAAAATGAGGCTGTCATGAACTACATTAATGTATTTCGGATTTGACCCCATTTCGAAGTTCGAAGTATGAACTCGGAGAGTTGATACCAAAAAGAAGACAGCTTGAAGTAGAGCATATAGGGGCTAAAGAAACTTATGACTTGGAAAGCGCACTCGATTTGTAAGGTGCGAATGTGAAGCTCACATAAAAACCTCGGGTCCTTCGCACCTCGAAATTTGTCAAAAAGCAACTGGATCAGTTACTTTCAGTAAAAGTCAATGGTTGACCCAAGCCTTTTTGGCATCAGTTTTTGCAATAATGTGAGGAATTGATATCATTAGTGTATGAATTACTGCATTTTCACTGTCTCACTCCATGTGGGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 5068-4492 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000045.1 Paenibacillus polymyxa strain NRRL B-30509 contig00045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 5067 32 100.0 36 ................................ CAGTACAACGCCGCCACCTTTGTGATCTATTATCGC 4999 32 100.0 34 ................................ GAAGTTCAAAGGGCTAAGAGGCATCCAGCCTATG 4933 32 100.0 37 ................................ CAGATATTAGACGTACAGCCCAAGAGCATCCTTATAT 4864 32 100.0 37 ................................ CATAACGCACCTCCTATCGTATAGCCTCGTGAATTAC 4795 32 96.9 36 ......................A......... TGATTGTGATTGTCCGAAAACATCTACCTATAATGT 4727 32 100.0 35 ................................ TACGATCAGCGCCCAGCGATGCGCTAATTCGTGCT 4660 32 90.6 33 .........T..A......T............ AGCTTCTGTATTACTCACCCAAAGAGCAGATAA 4595 32 90.6 38 .........T..A......T............ ACTTCTCCTCGTTTTTTGATATTAAAATTGGTATCAAA 4525 32 75.0 0 .........TG.A...A........C...TGG | AC [4495] ========== ====== ====== ====== ================================ ====================================== ================== 9 32 94.8 36 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : GCGTGGATTGAAATATAAACGCCATTACGGGAACTTGCCAAAATTCGAGGGTCGCACTCCATGGGAGTGCGTAGATTGAAGTAATAAGCTCGTCCCTCTTTTGAAGCTTCCATTCCTGATCTTACGATTTGTAAAGCGTTGCTTTATCCGAAATAAAGAGGTCCGATAAGTGGAGGAACGGATATTTTATGCGATTTGGAGGGTGGGCGACGGTTTAGTACACTTTCGTGTGGGATGAGCTGATCTTGTAGCAAAAAGATGAGTTTTACTTCCATGGATGCCATAAAAACCTGCCGTTAGATAATGAATGTTTTATTATGGTGCGAATGTGAAGCTCACATAAAAACCCTGGGTCTTTCGCACCTCGAAATTTGTCGAAAAGCAACTAAATTAGTTACCCTCAGTTAAAGTCAATGGTTGATCCAAGCCTTTGTGGCATCAGTTTCCGCGCTAATGTAAGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCACT # Right flank : AGTAGCCGTCACCTGGTCGTACGATTGGAGAGCGCCGTTTTATCCGAAATAAAAGATCCGATAAGTGGAAGAACGGATATTTTATGCGATTTGGAGGGTGGCTTACGGTTTAGTACACTTCCGTGTGGGATGAGCTGATCTTGTAGCAAAAAGATGATTTTTACTTCCATGGATGCCATAAAACCTGCAGTTAGATAATATGAATGTTTTATTATGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGAAACTGAATCAGTTACCTTCAGTAAAAATCAAGCGTTGATCCAGGCCTTTTTGGCATCAGTTTTTGCGACAATGTGAGAAATTGATATCATTAGGGTATGAATTACTACATTTTCGCTGTCGCACTCCATGTGAGTGCGTGGATTGAAATTTGCAATATAATTTCCAAGGAGGAATAATCTGTGAAGTCGCACTCCATGTGAGTGCGTGGATTGAAATAGAT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 5990-5486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHO01000045.1 Paenibacillus polymyxa strain NRRL B-30509 contig00045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 5989 32 100.0 34 ................................ TGGACGTTGCGTCCTGGCTTTCTAGCCCGCCAAA 5923 32 100.0 35 ................................ TAGTGTGGTTTTAGGTACTGTATTGGATTCTTTAT 5856 32 100.0 38 ................................ AGACACTCGGAATAATTCCTCGGTCTTCACAGGTCCAA 5786 32 100.0 35 ................................ CTCTGTTGTAACCTGTATACCCGAAGCGTGTGGTT 5719 32 100.0 34 ................................ TTATATACACTCTCAATGTATGGCAAATTGATTA 5653 32 100.0 37 ................................ AATAAAGTATTCTGAAGTTGCTGCTGTCTGCTGTGTC 5584 31 93.8 36 .............A-................. ATAAACGCCATTACGGGAACTTGCCAAAATTCGAGG 5517 32 90.6 0 .............G........A.......G. | ========== ====== ====== ====== ================================ ====================================== ================== 8 32 98.0 36 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TCTCGGAACAGTAGCTGAGGGAGATAAGAATAGAG # Right flank : AATAAGCTCGTCCCTCTTTTGAAGCTTCCATTCCTGATCTTACGATTTGTAAAGCGTTGCTTTATCCGAAATAAAGAGGTCCGATAAGTGGAGGAACGGATATTTTATGCGATTTGGAGGGTGGGCGACGGTTTAGTACACTTTCGTGTGGGATGAGCTGATCTTGTAGCAAAAAGATGAGTTTTACTTCCATGGATGCCATAAAAACCTGCCGTTAGATAATGAATGTTTTATTATGGTGCGAATGTGAAGCTCACATAAAAACCCTGGGTCTTTCGCACCTCGAAATTTGTCGAAAAGCAACTAAATTAGTTACCCTCAGTTAAAGTCAATGGTTGATCCAAGCCTTTGTGGCATCAGTTTCCGCGCTAATGTAAGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCACTGTCGCACTCCATGTGAGTGCGTGGATTGAAATCAGTACAACGCCGCCACCTTTGTGATCTATTATCGCGTCGCACTCCATGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //